TCONS_00003669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003669
Unique NameTCONS_00003669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003669 ID=TCONS_00003669|Name=TCONS_00003669|organism=Clytia hemisphaerica|type=transcript|length=707bp
ATACAAGCAGAGAATAGGGTGGCAGATAATGCAAAAACATTgtgtttcaa
tgaatatcaGACCACAAAACCCAACAACTACAACTACCACTCAAGGAGAA
GTCATCATCAGCTCCAAAGGGATGAAGAGAGGGGATGATGAATTTTGGCA
TGTGGGTCCACATAGGGGGGTATCACATACAAGCAGAGAATAGGGTGGCA
GATAATGCAAAAACATTgtgtttcaatgaatatcaAACCACAAAACCCAA
CAACTACAACTACCACTCAAGGAGAAGTCATCATATCAGCTCCAAAGGGA
TGAAGAGAGGGGATGATGAATTTTGGCATGTGGGTCCACTGAGGGGGTTA
TCACATACAAGCAGAGAATAGGGTGGCAGATAATGCAAAAAGTATGTTAT
TCTTTCCTAATTTTCAAATGACTGATGAAAAAGCTTGTTTTTAATGAATC
TAAATTTATTATCTTAAAGTAAGTTTTGACATGTTCCTTCCCTGTTTTTG
ACTTTGAAAccaaaatgcaaatacatataTGGCTATATTGAGTAAACAAT
CACAATTacaatatatataatttttttctcaatagcACGTGCATTTCCAC
ATTCCATAGAGTTTTCGCATAGCGATATTAAcagcgtcgttatgacgttt
tattaaggttcatgtcacacttattccttaattactcatgatgtaattac
ttaaatt
Run BLAST on NCBI

transcript from alignment at sc0000030:696665..697834-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003669 ID=TCONS_00003669|Name=TCONS_00003669|organism=Clytia hemisphaerica|type=transcript|length=1170bp|location=Sequence derived from alignment at sc0000030:696665..697834- (Clytia hemisphaerica)
ATACAAGCAGAGAATAGGGTGGCAGATAATGCAAAAAGTATGTTATTATT
TCGTAATTTTCAAATGACTGATGAAAAAGCTTGTTTTTAATGAATCTAAA
TTTATTATCTTAAAGTAAGTTTTGACATGTTCCTTCCCTGTTTTTGACTT
TGAAACCAAAATGCAAATACATATATGGCTATATTGAATAAACAATCACA
ATTACAATATACCGGGTGCACCAAAAAAAAGTATCATCAGCTCCAAAGTT
TTTGTTCAATATAACATTTTTTATGTATGAAAAAGTATTTGTTTAAATTT
ACAGCATTGTGTTTCAATGAATATCAGACCACAAAACCCAACAACTACAA
CTACCACTCAAGGAGAAGTCATCATCAGCTCCAAAGGGATGAAGAGAGGG
GATGATGAATTTTGGCATGTGGGTCCACATAGGGGGGTATCACATACAAG
CAGAGAATAGGGTGGCAGATAATGCAAAAAGTATGTTATTCTTTCCTAAT
TTTCAAATGACTGATGAAAAAGCTTGTTTTTAATGAATCTAAATTTATTA
TCTTAAAGTAAGTTTTGACATGTTCCTTCCCTGTTTTTGACTTTGAAACC
AAAATGCAAATACATATATGGCTATATTGAATAAACAATCACAATTACAA
TATATATAATTTGTTTAAATTTACAGCATTGTGTTTCAATGAATATCAAA
CCACAAAACCCAACAACTACAACTACCACTCAAGGAGAAGTCATCATATC
AGCTCCAAAGGGATGAAGAGAGGGGATGATGAATTTTGGCATGTGGGTCC
ACTGAGGGGGTTATCACATACAAGCAGAGAATAGGGTGGCAGATAATGCA
AAAAGTATGTTATTCTTTCCTAATTTTCAAATGACTGATGAAAAAGCTTG
TTTTTAATGAATCTAAATTTATTATCTTAAAGTAAGTTTTGACATGTTCC
TTCCCTGTTTTTGACTTTGAAACCAAAATGCAAATACATATATGGCTATA
TTGAGTAAACAATCACAATTACAATATATATAATTTTTTTCTCAATAGCA
CGTGCATTTCCACATTCCATAGAGTTTTCGCATAGCGATATTAACAGCGT
CGTTATGACGTTTTATTAAGGTTCATGTCACACTTATTCCTTAATTACTC
ATGATGTAATTACTTAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002031XLOC_002031Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003669-exon-sc0000030-1575043694:697798..697834TCONS_00003669-exon-sc0000030-1575043694:697798..697834Clytia hemisphaericaexon
TCONS_00003669-exon-sc0000030-1575043694:697355..697530TCONS_00003669-exon-sc0000030-1575043694:697355..697530Clytia hemisphaericaexon
TCONS_00003669-exon-sc0000030-1575043694:696665..697158TCONS_00003669-exon-sc0000030-1575043694:696665..697158Clytia hemisphaericaexon
TCONS_00003669-exon-sc0000030-1510915933:697798..697834TCONS_00003669-exon-sc0000030-1510915933:697798..697834Clytia hemisphaericaexon
TCONS_00003669-exon-sc0000030-1510915933:697355..697530TCONS_00003669-exon-sc0000030-1510915933:697355..697530Clytia hemisphaericaexon
TCONS_00003669-exon-sc0000030-1510915933:696665..697158TCONS_00003669-exon-sc0000030-1510915933:696665..697158Clytia hemisphaericaexon
TCONS_00003669-exon-sc0000030-1491911889:697798..697834TCONS_00003669-exon-sc0000030-1491911889:697798..697834Clytia hemisphaericaexon
TCONS_00003669-exon-sc0000030-1491911889:697355..697530TCONS_00003669-exon-sc0000030-1491911889:697355..697530Clytia hemisphaericaexon
TCONS_00003669-exon-sc0000030-1491911889:696665..697158TCONS_00003669-exon-sc0000030-1491911889:696665..697158Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:696665..697834 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.285482	0.278961	0.224434	0.158402	0.158231	0.151834	0.167707	0.31321	0	0	0.787609	0.103273	0.184122	0.402478	0.394067	0.296956	0.417418	0.134128	0	0.142522	0.258333	0.352525	0.326732	0.122624	0	0.111097	0.439737	0.417007	0.977252	0.353879
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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