TCONS_00003838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003838
Unique NameTCONS_00003838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003838 ID=TCONS_00003838|Name=TCONS_00003838|organism=Clytia hemisphaerica|type=transcript|length=600bp
CACCATATTAATAAATATAACTGATGAAACGATCAACGAGATCAGGAGAC
TTCCAACCAATGATACGTTGATACGTCTCGACGTCATTAAGGCGTGATAT
CGTAACGGTTTTGAGATTTTCAAATATCGATCCAACGCGATAAGAATGAT
CAGAAAATTCGATACCCAATTATTAACAATGTCTGTATACCGAATAGACA
ATGGTTTCTCATCTGGTGTGAATCCAATATAAACAATAGCTTTGAAAGGC
ATTATGACAAAACATGTGAAAGCATCCCATAAATTCAAAGCCACCAATAG
TCTGTCAGGGTTTGAGATTTGGCGCCCTTTATTCTTCTTCACCAAACAAT
AGAGAGCTAAGGTATTCACCAGTAATCCGATTATTGAAAGCGGGATTCGG
ATTATACCGTGGTGGTAATATTCCATTATTAATCAACCACTTCAGCAACT
TACGCTAGATGACTGTGCTGTATTGGATGATAAGTGCAAAGGTACTTTCT
ATGATATCAAACAAATATTCAtaatctttgattttctttctttccaaGAG
GCGTTTTTATTTCCAATGGAGTTGTGCGGGTGTGATCTGTCCTTGGTCGG
Run BLAST on NCBI

protein sequence of TCONS_00003838-protein

>TCONS_00003838-protein ID=TCONS_00003838-protein|Name=TCONS_00003838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MEYYHHGIIRIPLSIIGLLVNTLALYCLVKKNKGRQISNPDRLLVALNLW
DAFTCFVIMPFKAIVYIGFTPDEKPLSIRYTDIVNNWVSNFLIILIALDR
YLKISKPLRYHALMTSRRINVSLVGSLLISLIVSSVIFINMV
Run BLAST on NCBI

transcript from alignment at sc0000031:294400..294999

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003838 ID=TCONS_00003838|Name=TCONS_00003838|organism=Clytia hemisphaerica|type=transcript|length=600bp|location=Sequence derived from alignment at sc0000031:294400..294999 (Clytia hemisphaerica)
CCGACCAAGGACAGATCACACCCGCACAACTCCATTGGAAATAAAAACGC
CTCttggaaagaaagaaaatcaaagattaTGAATATTTGTTTGATATCAT
AGAAAGTACCTTTGCACTTATCATCCAATACAGCACAGTCATCTAGCGTA
AGTTGCTGAAGTGGTTGATTAATAATGGAATATTACCACCACGGTATAAT
CCGAATCCCGCTTTCAATAATCGGATTACTGGTGAATACCTTAGCTCTCT
ATTGTTTGGTGAAGAAGAATAAAGGGCGCCAAATCTCAAACCCTGACAGA
CTATTGGTGGCTTTGAATTTATGGGATGCTTTCACATGTTTTGTCATAAT
GCCTTTCAAAGCTATTGTTTATATTGGATTCACACCAGATGAGAAACCAT
TGTCTATTCGGTATACAGACATTGTTAATAATTGGGTATCGAATTTTCTG
ATCATTCTTATCGCGTTGGATCGATATTTGAAAATCTCAAAACCGTTACG
ATATCACGCCTTAATGACGTCGAGACGTATCAACGTATCATTGGTTGGAA
GTCTCCTGATCTCGTTGATCGTTTCATCAGTTATATTTATTAATATGGTG

Coding sequence (CDS) from alignment at sc0000031:294400..294999

>TCONS_00003838 ID=TCONS_00003838|Name=TCONS_00003838|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at sc0000031:294400..294999 (Clytia hemisphaerica)
ATGGAATATTACCACCACGGTATAATCCGAATCCCGCTTTCAATAATCGG
ATTACTGGTGAATACCTTAGCTCTCTATTGTTTGGTGAAGAAGAATAAAG
GGCGCCAAATCTCAAACCCTGACAGACTATTGGTGGCTTTGAATTTATGG
GATGCTTTCACATGTTTTGTCATAATGCCTTTCAAAGCTATTGTTTATAT
TGGATTCACACCAGATGAGAAACCATTGTCTATTCGGTATACAGACATTG
TTAATAATTGGGTATCGAATTTTCTGATCATTCTTATCGCGTTGGATCGA
TATTTGAAAATCTCAAAACCGTTACGATATCACGCCTTAATGACGTCGAG
ACGTATCAACGTATCATTGGTTGGAAGTCTCCTGATCTCGTTGATCGTTT
CATCAGTTATATTTATTAATATGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002147XLOC_002147Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003838-exon-sc0000031-1491911889:294400..294999TCONS_00003838-exon-sc0000031-1491911889:294400..294999Clytia hemisphaericaexon
TCONS_00003838-exon-sc0000031-1510915933:294400..294999TCONS_00003838-exon-sc0000031-1510915933:294400..294999Clytia hemisphaericaexon
TCONS_00003838-exon-sc0000031-1575043694:294400..294999TCONS_00003838-exon-sc0000031-1575043694:294400..294999Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003838-proteinTCONS_00003838-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:294400..294999 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.816623	0.530891	0.719151	0.201022	0.9789	0.870232	13.882	15.0712	10.3223	8.14504	3.12554	4.53222	0.120691	0.0626695	0.103046	0.27646	0	0.0698158	0.0964543	0.100932	0	0	0.728252	0.283752	0.0974191	0	0	0	0.302129	0.307822
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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