TCONS_00003814 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003814
Unique Name	TCONS_00003814
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2850

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000031:654256..659117-
coding sequence from alignment at sc0000031:654256..659117-

transcript sequence

>TCONS_00003814 ID=TCONS_00003814|Name=TCONS_00003814|organism=Clytia hemisphaerica|type=transcript|length=2850bp
TTTAGATAAAGTAAAACATTTATTGAATGTATCTCCAAACTACACAAAga
aataacattgaaaaatgttaagaattccAAATGAGGAGAAAGCCCCAAAT
ATTCAAATCACCCCAAGTGAAAGCATTCCAATTTCACCACAAACCAACGA
GGAGAAGGTTGTTTATTTAGTACGACAGACAGGAATTGAAAAAGAGATTG
CTCGTGAATTCCTTGAATCTAATGGATGGAATCTACAAGAAGcaCTAATT
GGTTATAAACAACTTGTTCAACATGAAAAACAAGCTGAGGAGGAGAAACA
CGATCAAACCAAACTCTCCACATATGATTTTGATAAACGGAAAGTCAGCC
GTGGTTTTTCTCTTTCCAACTTCAAAATCATTCAAGATGAAAGAGAAAAG
CAAAAAACTCTGGTTTGTCAAGAAAGTACAACCCAAGATTCTTTCAAAGT
TCTTGGCCCTTCATCAAGAGAATCGTTTGTTTTGCCAGACATATCAATGC
TGGACAAGGATGTGGCTTATATCATCAAAACAGAACTCATTAGTAAAAGT
GCTCTCCATAAGCTTACCAATGTGGgaCGTTTAAATTGGTGGACTGAAAT
GGGTACATGTCGCAAATTATTTCCACTCTTGACAGTAGGAGATGGGAATT
GTTTATTGCATGCAGCTTCACTTGGAATGTGGGGCTTCCACGACCGGATG
TTGATCCTGCGTAAAGCACTTTATCAAATGTTTCTAAATCCAATTGCAAT
TAAAGCATTGAAAAGACGTTGGAAGTATAACATGTGGGTTGATAATATGA
AGTGCGGTGGTTTGACTTTTACTCGCCAAGAATGGGACACAGAGTGGAAC
ACAGTTGTCGGGCTAACCAGCAATGTCTCACACAAGCTAGAATCAGACTC
TTCACAGAACTGCAAAAGAATAACCCGACAAATTTCATTATCAAGCTCTA
ATTCCGAACTAGAAGAAGGAGAGAGCTTAGATAGTCTTGAACCAATTCAT
GTGTACGCACTTTCAAATTTATTGTGTCGACCCATTATTGTTCTGTCAGA
AGATATGTTAAAGGATGCAGAGGGTCGTCCTATCGCCCCAATCCCTTTTG
GTGGGATATATTTACCGTTAGAGCAAGATGTCAGTAAATGTTATAAATAT
CCTCTCATTTTGGCTTTCGAGTCATCACATTTTTCAGCTTTGGTACCTGC
TGATGGTGACAATTTACATAATGGCGAGAAGTTGTCATCAAGTGTGCCAT
TACAAAACAAAGATCTTGCATTTTTGGATCTCAAATTTGCAATGGATCCT
GGATCAACTTGGGATATGGTTCAGGATGATAGTGTAAAGGAGGAACGTAT
GGAATTAACATTACaagagaaaattattttattgcGGAAATATATGGATG
TTGTTAAAGTCCCATCCAAAAAGGCAAAGCCAGCACCTCCACCAGTTAAT
GATTTAAGGGTTGGTTCTGTTATTGATCATGTACATAATGTCTTAGTTGG
GCGACCAGAAAATTTACAACCACCAGCCCCTGAACCAGATATAATGCTTG
TTTGCGCTAAAATTAGCATGAAGAATCGTCCAAAACATTACAAGGAAATG
ATTCAAAACTTTATTGACACCAAAATGGTTGAAGCTAAAGAATTACGAGA
TTTACAAAATCGATGTCCAAATTGTGGTGCTGAAGGTTTCCCACATTTGA
AAGGTTATTGTGAGTGGTGTTTTGAGCGCGCCAAGATGGTTGGAGGGAAA
tcaccaagtccaaaacagaAATCGCCCATCAGTACGCTTGTGAGGAGAAC
AAACAAATTGCTGATAGGGGAACCTGACAATaacaaaaatcagaaacaaa
ATTTATTGTGTTCTCCACCCTCACCAAGAACTTCCTCTAAGACGTTACCA
ATGCCtgctaaaaagaaagaaaacaacaGCATACCATCAACACAAAATGT
GACCCAAGATGAACCTTTGCCCATGAAATCACGATCAGCTGATAATATTC
ACTATCCGCCATCAATGCGAGGTCAGCAAACAAGAGAACAGATTATTAGC
CAAGAAGAAGCTGGTTTTTATCGCAGTCAATCACTTTCAAACAGGCCTGA
AGTTGCCCCTTTGAACCCTTCACTATCTCGACCACAAACTTCAGAGCCCT
CATCTCGACCCCAAATATCAAGGCCGTTATCTGATCCGCAAAATACCAAT
GAATCACAACCATCAAGACCTCAGACGTCACCAAATACTTCATCATCAAC
TTCACCAGGAGAATTTGTTCCTGGTAAACCATGCAAAGTGTCTGGCTGTA
ATTTTTATGGCAGTAATCAAACTTTAGGGTTTTGTTCTGGCTGTTACAGA
CAATATAatcattgaaattgaaatattaaTGGCTTGTGTACATTTAGTAA
GGTAGAATTTAtttgtagttttttttttaccatagaaagtatttttagtA
AAGTGTCTAGTAGAAAATGTAtttaaagattcttttttttcGTATAAATT
TGTTATtagaaattaatattttttatttggtggtagtataaaaatgattt
ttaagattttgacacAGATAATTATCTACTAAGTATCTTCAAAAgtaaaa
caagttttttttttgtcaaataagtgtataaaatttctatttaatgattt
ttttttaactcaagttttttggttgtttttgttattgttgtatTTGTAAT
TATTTCTTATTGATATTCTTGTAGTAAAAACTTATTTAAATAcaatcaat
ttctgaaaaaatctaatGACAAAGTTGCTCCTCGACTcttgtcaaaatta
tttttcattttttattgtatCCAGGATGGATGGTCTAGCTAAAAAGTGAA

Run BLAST on NCBI

protein sequence of TCONS_00003814-protein

>TCONS_00003814-protein ID=TCONS_00003814-protein|Name=TCONS_00003814-protein|organism=Clytia hemisphaerica|type=polypeptide|length=766bp
MLRIPNEEKAPNIQITPSESIPISPQTNEEKVVYLVRQTGIEKEIAREFL
ESNGWNLQEALIGYKQLVQHEKQAEEEKHDQTKLSTYDFDKRKVSRGFSL
SNFKIIQDEREKQKTLVCQESTTQDSFKVLGPSSRESFVLPDISMLDKDV
AYIIKTELISKSALHKLTNVGRLNWWTEMGTCRKLFPLLTVGDGNCLLHA
ASLGMWGFHDRMLILRKALYQMFLNPIAIKALKRRWKYNMWVDNMKCGGL
TFTRQEWDTEWNTVVGLTSNVSHKLESDSSQNCKRITRQISLSSSNSELE
EGESLDSLEPIHVYALSNLLCRPIIVLSEDMLKDAEGRPIAPIPFGGIYL
PLEQDVSKCYKYPLILAFESSHFSALVPADGDNLHNGEKLSSSVPLQNKD
LAFLDLKFAMDPGSTWDMVQDDSVKEERMELTLQEKIILLRKYMDVVKVP
SKKAKPAPPPVNDLRVGSVIDHVHNVLVGRPENLQPPAPEPDIMLVCAKI
SMKNRPKHYKEMIQNFIDTKMVEAKELRDLQNRCPNCGAEGFPHLKGYCE
WCFERAKMVGGKSPSPKQKSPISTLVRRTNKLLIGEPDNNKNQKQNLLCS
PPSPRTSSKTLPMPAKKKENNSIPSTQNVTQDEPLPMKSRSADNIHYPPS
MRGQQTREQIISQEEAGFYRSQSLSNRPEVAPLNPSLSRPQTSEPSSRPQ
ISRPLSDPQNTNESQPSRPQTSPNTSSSTSPGEFVPGKPCKVSGCNFYGS
NQTLGFCSGCYRQYNH

Run BLAST on NCBI

transcript from alignment at sc0000031:654256..659117-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003814 ID=TCONS_00003814|Name=TCONS_00003814|organism=Clytia hemisphaerica|type=transcript|length=4862bp|location=Sequence derived from alignment at sc0000031:654256..659117- (Clytia hemisphaerica)
TTTAGATAAAGTAAAACATTTATTGAATGTATCTCCAAACTACACAAAGA
AATAACATTGAAAAATGTTAAGAATTCCAAATGAGGAGAAAGCCCCAAAT
ATTCAAATCACCCCAAGTGAAAGCATTCCAATTTCACCACAAACCAACGA
GGAGAAGGTTGTTTATTTAGTACGACAGACAGGAATTGAAAAAGAGATTG
CTCGTGAATTCCTTGAATCTAATGGATGGAATCTACAAGAAGGTTTGTTA
TATAGGTTTTTTAACTTTTTTTGTACATAATCTTTAAAAGTAAAAGTAGT
AACCTGTTATAATTGTTCTAGTAATTCTAATAATTCCGTACAACCAGGTC
AGGGAGCAGAAGCAGGGAGACTTCAGCCTCCCCACTTTTGAGAAAATGAG
ATTTTTTTCTCAAATTCCCAGCAAATTTATCTCATTTTGAGCCTTCAGCC
TCCCCACTTTTATGGTTGTTCTGCCAGGGCTGCAACTTGGTGAAGTTCAT
GTTATATCATTATCATGTTTGGGTTTTGGAAAGTTTGTACTTTGTATAGA
ATACATCTTCATCTTCACTCAACAAGAGTTGAAATAATTATGTCATTTTT
TTCCAGCACTAATTGGTTATAAACAATAATTATGTCATTTTTTTCCAGCA
CTAATTGGTTATAAACAATAATTATGTCATTTTTTTCCAGCACTAATTGG
TTATATAAACAATAATTGTGTCATTTTTTTCCAGCACTAATTGGTTATAA
ACAATAATTATGTCATTTTTTTCCAGCACTAATTGGTTATATAAACAATA
ATTATGTCATTTTTTTCCAGCACTAATTGGTTATATAAACAATAATTATG
TCATTTTTTTCCAGCACTAATTGGTTATATAAACAATAATTATGTCATTT
TTTTCCAGCACTAATTGGTTATAAACAATAATTATGTCATTTTTTTCCAG
CACTAATTGGTTATATAAACAATAATTATGTCATTTTTTTCCAGCACTAA
TTGGTTATATAAACAATAATTATGTCATTTTTTTCCAGCACTAATTGGTT
ATATAAACAATAATTATGTCATTTTTTTCCAGCACTAATTGGTTATATAA
ACAATAATTATGTCATTTTTTTCCAGCACTAATTGGTTATATAAACAATA
ATTATGTCATTTTTTTCCAGCACTAATTGGTTATAAACAATAATTATGTC
ATTTTTTTCCAGCACTAATTGGTTATAAACAACTTGTTCAACATGAAAAA
CAAGCTGAGGAGGAGAAACACGATCAAACCAAACTCTCCACATATGATTT
TGATAAACGGAAAGTCAGCCGTGGTTTTTCTCTTTCCAACTTCAAAATCA
TTCAAGATGAAAGAGAAAAGCAAAAAACTCTGGTTTGTCAAGAAAGTACA
ACCCAAGATTCTTTCAAAGTTCTTGGCCCTTCATCAAGAGAATCGTTTGT
TTTGCCAGACATATCAATGCTGGACAAGGATGTGGCTTATATCATCAAAA
CAGAACTCATTAGTAAAAGTGCTCTCCATAAGCTTACCAATGTGGGTAAG
TAAGAAATTTGAGTTTTTTTTACCATGTCTAGAGATTTTTTAAATTACAT
AGGCATATCTCAGAAATTCCCTGATTTTCTTGCCCAAAGATACATAAATA
GCATTTTAACCCTCATAACATCGTTGTCAAAGCAGAAGGACCAATCTCAA
GATGAGTCTCTTGGCATATTGAGAATCTTTCTATAAGATAAACCTTTGAT
AATGAAATTGGCCCTCTAATCTTACCAAGGAGAGATTCATCCAAAGGTTT
ATTCTCACCTTCCTAAGATACTAATTTTGAGGTTTGCCCTTTTGCCTTTT
GCCATACGACGATATGCAGAATAATGATGTTGTTAGGGTTTATAGAGCCA
GAGATTTAATATTCTAGTCAAAATGCCTTTTTCAAATTTTAGGACGTTTA
AATTGGTGGACTGAAATGGGTACATGTCGCAAATTATTTCCACTCTTGAC
AGTAGGAGATGGGAATTGTTTATTGCATGCAGCTTCACTTGGAATGTGGG
GCTTCCACGACCGGATGTTGATCCTGCGTAAAGCACTTTATCAAATGTTT
CTAAATCCAATTGCAATTAAAGCATTGAAAAGACGTTGGAAGTATAACAT
GTGGGTTGATAATATGAAGTGCGGTAGGTGAAGGGGGTATTCAAAATATG
TCTACTCAATCAAATAGCTTCCTACTCTTTTCCACACTTCTACATTGCTT
TTAGACAATAGAATACAACATAATAAAAAGCTTTATTCCCTCCAATTGTG
CAAATATTATTCAATCTATTTGAAGCCTCTGAATCACAGCTGTCCAATCT
TGCAGATCACCAAAATTCGAGAGGTATTAGATTAGTAAACCCACTATTAC
AGACTGCTACAGATTCCCAATAAAACATATAATAAAACTTGAGTGAACCT
GCATATTAATTCCGAGGTCCTTCAAACCATAGAAATAATTTGCGCTTTTT
AAACTGATCCCTACACCATCTTGAATCATGTCATAATACATATATTTTGA
AACAGTGTAGTGTCATTATTAGATCAACTGACAAAATATTCATGATATGC
ACCTCAATGCAAATGAATTCAAAATATCATGTAGCTATTCTGTTTTCTTG
CACCTAATATATCACTTGCAACCAATCAGAATCATCTGTCTTTAAAAAGT
GACACAGTTTCAGAAGCCAGGGGTGCATGTCCTGAATGTGGGCTTAAATA
TACAAGAGTCATATAAAATTGTACTAATGTGTTATTTTTCAATACTTTTT
CTTTTGTTTAACCAACAGGTGGTTTGACTTTTACTCGCCAAGAATGGGAC
ACAGAGTGGAACACAGTTGTCGGGCTAACCAGCAATGTCTCACACAAGCT
AGAATCAGACTCTTCACAGAACTGCAAAAGAATAACCCGACAAATTTCAT
TATCAAGCTCTAATTCCGAACTAGAAGAAGGAGAGAGCTTAGATAGTCTT
GAACCAATTCATGTGTACGCACTTTCAAATTTATTGTGTCGACCCATTAT
TGTTCTGTCAGAAGATATGTTAAAGGATGCAGAGGGTCGTCCTATCGCCC
CAATCCCTTTTGGTGGGATATATTTACCGTTAGAGCAAGATGTCAGTAAA
TGTTATAAATATCCTCTCATTTTGGCTTTCGAGTCATCACATTTTTCAGC
TTTGGTACCTGCTGATGGTGACAATTTACATAATGGCGAGAAGTTGTCAT
CAAGTGTGCCATTACAAAACAAAGATCTTGCATTTTTGGATCTCAAATTT
GCAATGGATCCTGGATCAACTTGGGATATGGTTCAGGATGATAGTGTAAA
GGAGGAACGTATGGAATTAACATTACAAGAGAAAATTATTTTATTGCGGA
AATATATGGATGTTGTTAAAGTCCCATCCAAAAAGGCAAAGCCAGCACCT
CCACCAGTTAATGATTTAAGGGTTGGTTCTGTTATTGATCATGTACATAA
TGTCTTAGTTGGGCGACCAGAAAATTTACAACCACCAGCCCCTGAACCAG
ATATAATGCTTGTTTGCGCTAAAATTAGCATGAAGAATCGTCCAAAACAT
TACAAGGAAATGATTCAAAACTTTATTGACACCAAAATGGTTGAAGCTAA
AGAATTACGAGATTTACAAAATCGATGTCCAAATTGTGGTGCTGAAGGTT
TCCCACATTTGAAAGGTTATTGTGAGTGGTGTTTTGAGCGCGCCAAGATG
GTTGGAGGGAAATCACCAAGTCCAAAACAGAAATCGCCCATCAGTACGCT
TGTGAGGAGAACAAACAAATTGCTGATAGGGGAACCTGACAATAACAAAA
ATCAGAAACAAAATTTATTGTGTTCTCCACCCTCACCAAGAACTTCCTCT
AAGACGTTACCAATGCCTGCTAAAAAGAAAGAAAACAACAGCATACCATC
AACACAAAATGTGACCCAAGATGAACCTTTGCCCATGAAATCACGATCAG
CTGATAATATTCACTATCCGCCATCAATGCGAGGTCAGCAAACAAGAGAA
CAGATTATTAGCCAAGAAGAAGCTGGTTTTTATCGCAGTCAATCACTTTC
AAACAGGCCTGAAGTTGCCCCTTTGAACCCTTCACTATCTCGACCACAAA
CTTCAGAGCCCTCATCTCGACCCCAAATATCAAGGCCGTTATCTGATCCG
CAAAATACCAATGAATCACAACCATCAAGACCTCAGACGTCACCAAATAC
TTCATCATCAACTTCACCAGGAGAATTTGTTCCTGGTAAACCATGCAAAG
TGTCTGGCTGTAATTTTTATGGCAGTAATCAAACTTTAGGGTTTTGTTCT
GGCTGTTACAGACAATATAATCATTGAAATTGAAATATTAATGGCTTGTG
TACATTTAGTAAGGTAGAATTTATTTGTAGTTTTTTTTTTACCATAGAAA
GTATTTTTAGTAAAGTGTCTAGTAGAAAATGTATTTAAAGATTCTTTTTT
TTCGTATAAATTTGTTATTAGAAATTAATATTTTTTATTTGGTGGTAGTA
TAAAAATGATTTTTAAGATTTTGACACAGATAATTATCTACTAAGTATCT
TCAAAAGTAAAACAAGTTTTTTTTTTGTCAAATAAGTGTATAAAATTTCT
ATTTAATGATTTTTTTTTAACTCAAGTTTTTTGGTTGTTTTTGTTATTGT
TGTATTTGTAATTATTTCTTATTGATATTCTTGTAGTAAAAACTTATTTA
AATACAATCAATTTCTGAAAAAATCTAATGACAAAGTTGCTCCTCGACTC
TTGTCAAAATTATTTTTCATTTTTTATTGTATCCAGGATGGATGGTCTAG
CTAAAAAGTGAA

Coding sequence (CDS) from alignment at sc0000031:654256..659117-

>TCONS_00003814 ID=TCONS_00003814|Name=TCONS_00003814|organism=Clytia hemisphaerica|type=CDS|length=9204bp|location=Sequence derived from alignment at sc0000031:654256..659117- (Clytia hemisphaerica)
GTGGTTTGACTTTTACTCGCCAAGAATGGGACACAGAGTGGAACACAGTT
GTCGGGCTAACCAGCAATGTCTCACACAAGCTAGAATCAGACTCTTCACA
GAACTGCAAAAGAATAACCCGACAAATTTCATTATCAAGCTCTAATTCCG
AACTAGAAGAAGGAGAGAGCTTAGATAGTCTTGAACCAATTCATGTGTAC
GCACTTTCAAATTTATTGTGTCGACCCATTATTGTTCTGTCAGAAGATAT
GTTAAAGGATGCAGAGGGTCGTCCTATCGCCCCAATCCCTTTTGGTGGGA
TATATTTACCGTTAGAGCAAGATGTCAGTAAATGTTATAAATATCCTCTC
ATTTTGGCTTTCGAGTCATCACATTTTTCAGCTTTGGTACCTGCTGATGG
TGACAATTTACATAATGGCGAGAAGTTGTCATCAAGTGTGCCATTACAAA
ACAAAGATCTTGCATTTTTGGATCTCAAATTTGCAATGGATCCTGGATCA
ACTTGGGATATGGTTCAGGATGATAGTGTAAAGGAGGAACGTATGGAATT
AACATTACAAGAGAAAATTATTTTATTGCGGAAATATATGGATGTTGTTA
AAGTCCCATCCAAAAAGGCAAAGCCAGCACCTCCACCAGTTAATGATTTA
AGGGTTGGTTCTGTTATTGATCATGTACATAATGTCTTAGTTGGGCGACC
AGAAAATTTACAACCACCAGCCCCTGAACCAGATATAATGCTTGTTTGCG
CTAAAATTAGCATGAAGAATCGTCCAAAACATTACAAGGAAATGATTCAA
AACTTTATTGACACCAAAATGGTTGAAGCTAAAGAATTACGAGATTTACA
AAATCGATGTCCAAATTGTGGTGCTGAAGGTTTCCCACATTTGAAAGGTT
ATTGTGAGTGGTGTTTTGAGCGCGCCAAGATGGTTGGAGGGAAATCACCA
AGTCCAAAACAGAAATCGCCCATCAGTACGCTTGTGAGGAGAACAAACAA
ATTGCTGATAGGGGAACCTGACAATAACAAAAATCAGAAACAAAATTTAT
TGTGTTCTCCACCCTCACCAAGAACTTCCTCTAAGACGTTACCAATGCCT
GCTAAAAAGAAAGAAAACAACAGCATACCATCAACACAAAATGTGACCCA
AGATGAACCTTTGCCCATGAAATCACGATCAGCTGATAATATTCACTATC
CGCCATCAATGCGAGGTCAGCAAACAAGAGAACAGATTATTAGCCAAGAA
GAAGCTGGTTTTTATCGCAGTCAATCACTTTCAAACAGGCCTGAAGTTGC
CCCTTTGAACCCTTCACTATCTCGACCACAAACTTCAGAGCCCTCATCTC
GACCCCAAATATCAAGGCCGTTATCTGATCCGCAAAATACCAATGAATCA
CAACCATCAAGACCTCAGACGTCACCAAATACTTCATCATCAACTTCACC
AGGAGAATTTGTTCCTGGTAAACCATGCAAAGTGTCTGGCTGTAATTTTT
ATGGCAGTAATCAAACTTTAGGGTTTTGTTCTGGCTGTTACAGACAATAT
AATCATTGAGACGTTTAAATTGGTGGACTGAAATGGGTACATGTCGCAAA
TTATTTCCACTCTTGACAGTAGGAGATGGGAATTGTTTATTGCATGCAGC
TTCACTTGGAATGTGGGGCTTCCACGACCGGATGTTGATCCTGCGTAAAG
CACTTTATCAAATGTTTCTAAATCCAATTGCAATTAAAGCATTGAAAAGA
CGTTGGAAGTATAACATGTGGGTTGATAATATGAAGTGCGCACTAATTGG
TTATAAACAACTTGTTCAACATGAAAAACAAGCTGAGGAGGAGAAACACG
ATCAAACCAAACTCTCCACATATGATTTTGATAAACGGAAAGTCAGCCGT
GGTTTTTCTCTTTCCAACTTCAAAATCATTCAAGATGAAAGAGAAAAGCA
AAAAACTCTGGTTTGTCAAGAAAGTACAACCCAAGATTCTTTCAAAGTTC
TTGGCCCTTCATCAAGAGAATCGTTTGTTTTGCCAGACATATCAATGCTG
GACAAGGATGTGGCTTATATCATCAAAACAGAACTCATTAGTAAAAGTGC
TCTCCATAAGCTTACCAATGTGGATGTTAAGAATTCCAAATGAGGAGAAA
GCCCCAAATATTCAAATCACCCCAAGTGAAAGCATTCCAATTTCACCACA
AACCAACGAGGAGAAGGTTGTTTATTTAGTACGACAGACAGGAATTGAAA
AAGAGATTGCTCGTGAATTCCTTGAATCTAATGGATGGAATCTACAAGAA
GGTGGTTTGACTTTTACTCGCCAAGAATGGGACACAGAGTGGAACACAGT
TGTCGGGCTAACCAGCAATGTCTCACACAAGCTAGAATCAGACTCTTCAC
AGAACTGCAAAAGAATAACCCGACAAATTTCATTATCAAGCTCTAATTCC
GAACTAGAAGAAGGAGAGAGCTTAGATAGTCTTGAACCAATTCATGTGTA
CGCACTTTCAAATTTATTGTGTCGACCCATTATTGTTCTGTCAGAAGATA
TGTTAAAGGATGCAGAGGGTCGTCCTATCGCCCCAATCCCTTTTGGTGGG
ATATATTTACCGTTAGAGCAAGATGTCAGTAAATGTTATAAATATCCTCT
CATTTTGGCTTTCGAGTCATCACATTTTTCAGCTTTGGTACCTGCTGATG
GTGACAATTTACATAATGGCGAGAAGTTGTCATCAAGTGTGCCATTACAA
AACAAAGATCTTGCATTTTTGGATCTCAAATTTGCAATGGATCCTGGATC
AACTTGGGATATGGTTCAGGATGATAGTGTAAAGGAGGAACGTATGGAAT
TAACATTACAAGAGAAAATTATTTTATTGCGGAAATATATGGATGTTGTT
AAAGTCCCATCCAAAAAGGCAAAGCCAGCACCTCCACCAGTTAATGATTT
AAGGGTTGGTTCTGTTATTGATCATGTACATAATGTCTTAGTTGGGCGAC
CAGAAAATTTACAACCACCAGCCCCTGAACCAGATATAATGCTTGTTTGC
GCTAAAATTAGCATGAAGAATCGTCCAAAACATTACAAGGAAATGATTCA
AAACTTTATTGACACCAAAATGGTTGAAGCTAAAGAATTACGAGATTTAC
AAAATCGATGTCCAAATTGTGGTGCTGAAGGTTTCCCACATTTGAAAGGT
TATTGTGAGTGGTGTTTTGAGCGCGCCAAGATGGTTGGAGGGAAATCACC
AAGTCCAAAACAGAAATCGCCCATCAGTACGCTTGTGAGGAGAACAAACA
AATTGCTGATAGGGGAACCTGACAATAACAAAAATCAGAAACAAAATTTA
TTGTGTTCTCCACCCTCACCAAGAACTTCCTCTAAGACGTTACCAATGCC
TGCTAAAAAGAAAGAAAACAACAGCATACCATCAACACAAAATGTGACCC
AAGATGAACCTTTGCCCATGAAATCACGATCAGCTGATAATATTCACTAT
CCGCCATCAATGCGAGGTCAGCAAACAAGAGAACAGATTATTAGCCAAGA
AGAAGCTGGTTTTTATCGCAGTCAATCACTTTCAAACAGGCCTGAAGTTG
CCCCTTTGAACCCTTCACTATCTCGACCACAAACTTCAGAGCCCTCATCT
CGACCCCAAATATCAAGGCCGTTATCTGATCCGCAAAATACCAATGAATC
ACAACCATCAAGACCTCAGACGTCACCAAATACTTCATCATCAACTTCAC
CAGGAGAATTTGTTCCTGGTAAACCATGCAAAGTGTCTGGCTGTAATTTT
TATGGCAGTAATCAAACTTTAGGGTTTTGTTCTGGCTGTTACAGACAATA
TAATCATTGAGACGTTTAAATTGGTGGACTGAAATGGGTACATGTCGCAA
ATTATTTCCACTCTTGACAGTAGGAGATGGGAATTGTTTATTGCATGCAG
CTTCACTTGGAATGTGGGGCTTCCACGACCGGATGTTGATCCTGCGTAAA
GCACTTTATCAAATGTTTCTAAATCCAATTGCAATTAAAGCATTGAAAAG
ACGTTGGAAGTATAACATGTGGGTTGATAATATGAAGTGCGCACTAATTG
GTTATAAACAACTTGTTCAACATGAAAAACAAGCTGAGGAGGAGAAACAC
GATCAAACCAAACTCTCCACATATGATTTTGATAAACGGAAAGTCAGCCG
TGGTTTTTCTCTTTCCAACTTCAAAATCATTCAAGATGAAAGAGAAAAGC
AAAAAACTCTGGTTTGTCAAGAAAGTACAACCCAAGATTCTTTCAAAGTT
CTTGGCCCTTCATCAAGAGAATCGTTTGTTTTGCCAGACATATCAATGCT
GGACAAGGATGTGGCTTATATCATCAAAACAGAACTCATTAGTAAAAGTG
CTCTCCATAAGCTTACCAATGTGGATGTTAAGAATTCCAAATGAGGAGAA
AGCCCCAAATATTCAAATCACCCCAAGTGAAAGCATTCCAATTTCACCAC
AAACCAACGAGGAGAAGGTTGTTTATTTAGTACGACAGACAGGAATTGAA
AAAGAGATTGCTCGTGAATTCCTTGAATCTAATGGATGGAATCTACAAGA
AGGTGGTTTGACTTTTACTCGCCAAGAATGGGACACAGAGTGGAACACAG
TTGTCGGGCTAACCAGCAATGTCTCACACAAGCTAGAATCAGACTCTTCA
CAGAACTGCAAAAGAATAACCCGACAAATTTCATTATCAAGCTCTAATTC
CGAACTAGAAGAAGGAGAGAGCTTAGATAGTCTTGAACCAATTCATGTGT
ACGCACTTTCAAATTTATTGTGTCGACCCATTATTGTTCTGTCAGAAGAT
ATGTTAAAGGATGCAGAGGGTCGTCCTATCGCCCCAATCCCTTTTGGTGG
GATATATTTACCGTTAGAGCAAGATGTCAGTAAATGTTATAAATATCCTC
TCATTTTGGCTTTCGAGTCATCACATTTTTCAGCTTTGGTACCTGCTGAT
GGTGACAATTTACATAATGGCGAGAAGTTGTCATCAAGTGTGCCATTACA
AAACAAAGATCTTGCATTTTTGGATCTCAAATTTGCAATGGATCCTGGAT
CAACTTGGGATATGGTTCAGGATGATAGTGTAAAGGAGGAACGTATGGAA
TTAACATTACAAGAGAAAATTATTTTATTGCGGAAATATATGGATGTTGT
TAAAGTCCCATCCAAAAAGGCAAAGCCAGCACCTCCACCAGTTAATGATT
TAAGGGTTGGTTCTGTTATTGATCATGTACATAATGTCTTAGTTGGGCGA
CCAGAAAATTTACAACCACCAGCCCCTGAACCAGATATAATGCTTGTTTG
CGCTAAAATTAGCATGAAGAATCGTCCAAAACATTACAAGGAAATGATTC
AAAACTTTATTGACACCAAAATGGTTGAAGCTAAAGAATTACGAGATTTA
CAAAATCGATGTCCAAATTGTGGTGCTGAAGGTTTCCCACATTTGAAAGG
TTATTGTGAGTGGTGTTTTGAGCGCGCCAAGATGGTTGGAGGGAAATCAC
CAAGTCCAAAACAGAAATCGCCCATCAGTACGCTTGTGAGGAGAACAAAC
AAATTGCTGATAGGGGAACCTGACAATAACAAAAATCAGAAACAAAATTT
ATTGTGTTCTCCACCCTCACCAAGAACTTCCTCTAAGACGTTACCAATGC
CTGCTAAAAAGAAAGAAAACAACAGCATACCATCAACACAAAATGTGACC
CAAGATGAACCTTTGCCCATGAAATCACGATCAGCTGATAATATTCACTA
TCCGCCATCAATGCGAGGTCAGCAAACAAGAGAACAGATTATTAGCCAAG
AAGAAGCTGGTTTTTATCGCAGTCAATCACTTTCAAACAGGCCTGAAGTT
GCCCCTTTGAACCCTTCACTATCTCGACCACAAACTTCAGAGCCCTCATC
TCGACCCCAAATATCAAGGCCGTTATCTGATCCGCAAAATACCAATGAAT
CACAACCATCAAGACCTCAGACGTCACCAAATACTTCATCATCAACTTCA
CCAGGAGAATTTGTTCCTGGTAAACCATGCAAAGTGTCTGGCTGTAATTT
TTATGGCAGTAATCAAACTTTAGGGTTTTGTTCTGGCTGTTACAGACAAT
ATAATCATTGAGACGTTTAAATTGGTGGACTGAAATGGGTACATGTCGCA
AATTATTTCCACTCTTGACAGTAGGAGATGGGAATTGTTTATTGCATGCA
GCTTCACTTGGAATGTGGGGCTTCCACGACCGGATGTTGATCCTGCGTAA
AGCACTTTATCAAATGTTTCTAAATCCAATTGCAATTAAAGCATTGAAAA
GACGTTGGAAGTATAACATGTGGGTTGATAATATGAAGTGCGCACTAATT
GGTTATAAACAACTTGTTCAACATGAAAAACAAGCTGAGGAGGAGAAACA
CGATCAAACCAAACTCTCCACATATGATTTTGATAAACGGAAAGTCAGCC
GTGGTTTTTCTCTTTCCAACTTCAAAATCATTCAAGATGAAAGAGAAAAG
CAAAAAACTCTGGTTTGTCAAGAAAGTACAACCCAAGATTCTTTCAAAGT
TCTTGGCCCTTCATCAAGAGAATCGTTTGTTTTGCCAGACATATCAATGC
TGGACAAGGATGTGGCTTATATCATCAAAACAGAACTCATTAGTAAAAGT
GCTCTCCATAAGCTTACCAATGTGGATGTTAAGAATTCCAAATGAGGAGA
AAGCCCCAAATATTCAAATCACCCCAAGTGAAAGCATTCCAATTTCACCA
CAAACCAACGAGGAGAAGGTTGTTTATTTAGTACGACAGACAGGAATTGA
AAAAGAGATTGCTCGTGAATTCCTTGAATCTAATGGATGGAATCTACAAG
AAGGTGGTTTGACTTTTACTCGCCAAGAATGGGACACAGAGTGGAACACA
GTTGTCGGGCTAACCAGCAATGTCTCACACAAGCTAGAATCAGACTCTTC
ACAGAACTGCAAAAGAATAACCCGACAAATTTCATTATCAAGCTCTAATT
CCGAACTAGAAGAAGGAGAGAGCTTAGATAGTCTTGAACCAATTCATGTG
TACGCACTTTCAAATTTATTGTGTCGACCCATTATTGTTCTGTCAGAAGA
TATGTTAAAGGATGCAGAGGGTCGTCCTATCGCCCCAATCCCTTTTGGTG
GGATATATTTACCGTTAGAGCAAGATGTCAGTAAATGTTATAAATATCCT
CTCATTTTGGCTTTCGAGTCATCACATTTTTCAGCTTTGGTACCTGCTGA
TGGTGACAATTTACATAATGGCGAGAAGTTGTCATCAAGTGTGCCATTAC
AAAACAAAGATCTTGCATTTTTGGATCTCAAATTTGCAATGGATCCTGGA
TCAACTTGGGATATGGTTCAGGATGATAGTGTAAAGGAGGAACGTATGGA
ATTAACATTACAAGAGAAAATTATTTTATTGCGGAAATATATGGATGTTG
TTAAAGTCCCATCCAAAAAGGCAAAGCCAGCACCTCCACCAGTTAATGAT
TTAAGGGTTGGTTCTGTTATTGATCATGTACATAATGTCTTAGTTGGGCG
ACCAGAAAATTTACAACCACCAGCCCCTGAACCAGATATAATGCTTGTTT
GCGCTAAAATTAGCATGAAGAATCGTCCAAAACATTACAAGGAAATGATT
CAAAACTTTATTGACACCAAAATGGTTGAAGCTAAAGAATTACGAGATTT
ACAAAATCGATGTCCAAATTGTGGTGCTGAAGGTTTCCCACATTTGAAAG
GTTATTGTGAGTGGTGTTTTGAGCGCGCCAAGATGGTTGGAGGGAAATCA
CCAAGTCCAAAACAGAAATCGCCCATCAGTACGCTTGTGAGGAGAACAAA
CAAATTGCTGATAGGGGAACCTGACAATAACAAAAATCAGAAACAAAATT
TATTGTGTTCTCCACCCTCACCAAGAACTTCCTCTAAGACGTTACCAATG
CCTGCTAAAAAGAAAGAAAACAACAGCATACCATCAACACAAAATGTGAC
CCAAGATGAACCTTTGCCCATGAAATCACGATCAGCTGATAATATTCACT
ATCCGCCATCAATGCGAGGTCAGCAAACAAGAGAACAGATTATTAGCCAA
GAAGAAGCTGGTTTTTATCGCAGTCAATCACTTTCAAACAGGCCTGAAGT
TGCCCCTTTGAACCCTTCACTATCTCGACCACAAACTTCAGAGCCCTCAT
CTCGACCCCAAATATCAAGGCCGTTATCTGATCCGCAAAATACCAATGAA
TCACAACCATCAAGACCTCAGACGTCACCAAATACTTCATCATCAACTTC
ACCAGGAGAATTTGTTCCTGGTAAACCATGCAAAGTGTCTGGCTGTAATT
TTTATGGCAGTAATCAAACTTTAGGGTTTTGTTCTGGCTGTTACAGACAA
TATAATCATTGAGACGTTTAAATTGGTGGACTGAAATGGGTACATGTCGC
AAATTATTTCCACTCTTGACAGTAGGAGATGGGAATTGTTTATTGCATGC
AGCTTCACTTGGAATGTGGGGCTTCCACGACCGGATGTTGATCCTGCGTA
AAGCACTTTATCAAATGTTTCTAAATCCAATTGCAATTAAAGCATTGAAA
AGACGTTGGAAGTATAACATGTGGGTTGATAATATGAAGTGCGCACTAAT
TGGTTATAAACAACTTGTTCAACATGAAAAACAAGCTGAGGAGGAGAAAC
ACGATCAAACCAAACTCTCCACATATGATTTTGATAAACGGAAAGTCAGC
CGTGGTTTTTCTCTTTCCAACTTCAAAATCATTCAAGATGAAAGAGAAAA
GCAAAAAACTCTGGTTTGTCAAGAAAGTACAACCCAAGATTCTTTCAAAG
TTCTTGGCCCTTCATCAAGAGAATCGTTTGTTTTGCCAGACATATCAATG
CTGGACAAGGATGTGGCTTATATCATCAAAACAGAACTCATTAGTAAAAG
TGCTCTCCATAAGCTTACCAATGTGGATGTTAAGAATTCCAAATGAGGAG
AAAGCCCCAAATATTCAAATCACCCCAAGTGAAAGCATTCCAATTTCACC
ACAAACCAACGAGGAGAAGGTTGTTTATTTAGTACGACAGACAGGAATTG
AAAAAGAGATTGCTCGTGAATTCCTTGAATCTAATGGATGGAATCTACAA
GAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002126	XLOC_002126	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003814-exon-sc0000031-1575043694:658876..659117	TCONS_00003814-exon-sc0000031-1575043694:658876..659117	Clytia hemisphaerica	exon
TCONS_00003814-exon-sc0000031-1575043694:657573..657905	TCONS_00003814-exon-sc0000031-1575043694:657573..657905	Clytia hemisphaerica	exon
TCONS_00003814-exon-sc0000031-1575043694:656945..657175	TCONS_00003814-exon-sc0000031-1575043694:656945..657175	Clytia hemisphaerica	exon
TCONS_00003814-exon-sc0000031-1575043694:654256..656299	TCONS_00003814-exon-sc0000031-1575043694:654256..656299	Clytia hemisphaerica	exon
TCONS_00003814-exon-sc0000031-1510915933:658876..659117	TCONS_00003814-exon-sc0000031-1510915933:658876..659117	Clytia hemisphaerica	exon
TCONS_00003814-exon-sc0000031-1510915933:657573..657905	TCONS_00003814-exon-sc0000031-1510915933:657573..657905	Clytia hemisphaerica	exon
TCONS_00003814-exon-sc0000031-1510915933:656945..657175	TCONS_00003814-exon-sc0000031-1510915933:656945..657175	Clytia hemisphaerica	exon
TCONS_00003814-exon-sc0000031-1510915933:654256..656299	TCONS_00003814-exon-sc0000031-1510915933:654256..656299	Clytia hemisphaerica	exon
TCONS_00003814-exon-sc0000031-1491911889:658876..659117	TCONS_00003814-exon-sc0000031-1491911889:658876..659117	Clytia hemisphaerica	exon
TCONS_00003814-exon-sc0000031-1491911889:657573..657905	TCONS_00003814-exon-sc0000031-1491911889:657573..657905	Clytia hemisphaerica	exon
TCONS_00003814-exon-sc0000031-1491911889:656945..657175	TCONS_00003814-exon-sc0000031-1491911889:656945..657175	Clytia hemisphaerica	exon
TCONS_00003814-exon-sc0000031-1491911889:654256..656299	TCONS_00003814-exon-sc0000031-1491911889:654256..656299	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003814-protein	TCONS_00003814-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000031	supercontig	sc0000031:654256..659117 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.1383	20.0295	5.88629	3.60112	33.5142	24.9802	21.8994	22.523	11.9088	17.2889	13.6099	7.40779	10.2832	9.12049	8.78741	9.94595	15.2477	12.6929	7.31139	11.3866	10.4166	10.016	20.2389	19.1703	13.9758	17.0813	14.2939	11.3821	15.1188	14.8568

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002653	Znf_A20
IPR003323	OTU_dom
IPR009060	UBA-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003677	DNA binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Blast

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BLAST of TCONS_00003814 vs. Swiss-Prot (Human)
Match: OTU7B (OTU domain-containing protein 7B OS=Homo sapiens GN=OTUD7B PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 6.116e-72
Identity = 159/438 (36.30%), Postives = 234/438 (53.42%), Query Frame = 2

Query:  167 LVRQTGIEKEIAREFLESNGWNLQEALIGYKQLVQ-HEKQ---AEEEKHDQTKLSTYDFDKR--------------------KVSRGFSLSNFKIIQDEREKQKTLVCQESTTQDSFKVLGPSSRESFVLPDISMLDKDVAYIIKTELISKSALHKLTNVGRLNWWTEMG-TCRKLFPLLTVGDGNCLLHAASLGMWGFHDRMLILRKALYQMFLNPIAIKALKRRWKYNMWVDNMKCGGLTFTRQEWDTEWNTVVGLTSNVSHKLESDSSQNCKRITRQIXXXXXXXXXXXXXXXXXXXPIHVYALSNLLCRPIIVLSEDMLKDAEGRPIAPIPFGGIYLPLEQDVSKCYKYPLILAFESSHFSALVPADGDNLHNGEKLSSSVPLQNKDLAFLDLKFAMDPGSTWDMVQDDS--VKEERMELTLQEKIILLRKYMD 1399
             VR TG E  +AR+ LE   W++  AL  ++QL Q H      +  E    ++     F  R                    ++SRG S ++  I+   R    +      + +   ++  P    +F LPD+++ ++D    I+ +LI +S L  L   GRLNWW  +  T ++L PL T GDGNCLLHAASLGMWGFHDR L+LRKALY +    +  +ALKRRW++     N K  GL +T  EW  EWN ++ L S+        +  NC  +           E  E    +SLE  HV+ L+++L RPI+V+++ ML+D+ G   APIPFGGIYLPLE   S+C++ PL+LA++ +HFSALV  +        K  + +PL + +   L L FA+DPG  W+  +DDS  V+   + L+L+ K+ LL  YM+
Sbjct:   12 FVRSTGAEPGLARDLLEGKNWDVNAALSDFEQLRQVHAGNLPPSFSEGSGGSRTPEKGFSDREPTRPPRPILQRQDDIVQEKRLSRGISHASSSIVSLARSHVSSNGGGGGSNEHPLEM--PIC--AFQLPDLTVYNEDFRSFIERDLIEQSMLVALEQAGRLNWWVSVDPTSQRLLPLATTGDGNCLLHAASLGMWGFHDRDLMLRKALYALMEKGVEKEALKRRWRWQQTQQN-KESGLVYTEDEWQKEWNELIKLASSEPRMHLGTNGANCGGV-----------ESSEEPVYESLEEFHVFVLAHVLRRPIVVVADTMLRDSGGEAFAPIPFGGIYLPLEVPASQCHRSPLVLAYDQAHFSALVSME---QKENTKEQAVIPLTDSEYKLLPLHFAVDPGKGWEWGKDDSDNVRLASVILSLEVKLHLLHSYMN 430

The following BLAST results are available for this feature:

BLAST of TCONS_00003814 vs. Swiss-Prot (Human)

BLAST of TCONS_00003814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OTU7B	6.116e-72	36.30	OTU domain-containing protein 7B OS=Homo sapiens G...	[more]

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TCONS_00003814 (transcript) - C. hemisphaerica