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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003976 ID=TCONS_00003976|Name=TCONS_00003976|organism=Clytia hemisphaerica|type=transcript|length=1811bp
aTGGGGATTGATAGTCCCTTATTTTTTAAGGCTGGAGATTtaaattctta
ttttgtttttaagttggaaaattcagtggggatggaaaaatagcataata
ttttttagtgaggattggtttacttgattattttcagtggggacaaaaat
tggagtataattttccaccggagGCGATATTCtgaacaatttttccagtg
ggaaggggtccaagtgggtctgtgagaagtgggTCTCCTTAGTGAAAGTA
TAACTCAAactcaacctcgttccctgcgtattatcagtttttttatgctt
actgataagGCCAGATAATactctctggcgtccatcagtaaagtaaataa
agcctgggatacacaggGACGAGGTTGAGATCAGCCATAACATCAGCACG
TTTGAAATCAATCAAGGAATATAATTAGTATTTTTCCTCATCAACATATT
CTTAAAGCCAACTGTAATCAATTCTAAGTCATTATCACTATTCCTTCTTT
TCTGATGACGAAACAATCCTTTATTCGTTGTTTTGTGGTGGTTATTAGCG
TTCCCAAAGTTTAGCAGCTTATTCACTTCACGTTCGACGATCAATTGTAG
TTCTTTAGTGTCCGCTCCTTCTTCACCCGTCGATGGTTCCTCAATACAGG
GAAGATCTATTGTTTCAGGTAAGCTGCTCTTTCGAGAACGCCGTGACGGT
GAAATAGAAGCCGAATCACCGCCACACCCAGATACAGGTCCAAATTTTTT
GACTTCCGTGTTCATCAAAGGTATCATTGTTCCGTATTTATTCTTATTCC
GCAGCAAATCTcgacattttttacaataagGGTATTTATCAGTTTTCACT
ATCAAAACAGTTTTATCTTTTTGGAAACAGTTTCTACACCTCATATATTC
GGTTTGTTTGAATTCTGGCTCCGGTCTTATACTTTCATCATCTCCTGAGC
ATTCCTCAATAATTTCTGGTATACTATGACTAGAACTGCCATGTCCCGAT
GACTGTTGACTCAATTTTCGGCTAGGTCTATTAAAATCTCTGAAGTCAAA
TCCACCGTAACTTGTACCGGAGCTCCACGAATGACGTCGGTGAAGTTCTG
ATATTTGGTTCTTTCCATCGCTTGTTTCACCATCACCGTATCTTTCCGGC
CAATAGTGTACCCGGGGTTGAAAGACTTCCGGTAATGATGAAACTCGGTC
TCTTTTTGTGAAATCTATTCTTTCAGTTTTATTCTCATTCGTAAATCGAT
CATAGTAAACACCTCTTTTTCGTTCTCGTTCCCCGCTCCCTGATTtcgtc
attttgaaaaaaaatcgatAATTTCCAGTCAATTCCAAATACAAAACAAT
TATGAAGCCCAACCACAAAAAGGAAACATCCAATGATATACAACTCAAAA
AGCTCTGCAAATTTTAAGATAAGTCAGTCTTCTACAACCATAATTCGAAT
TTCTCCAAATTtgtgactttttcttttttcttctttttccaatTTCCTAC
TTTACTCCCGCGTGAGATACGATcaagaatgaaaaagaaaaacactccca
attttcttcttgattttcAGCGTTTTCTTCTTCTGTTGTTGTtaatatta
tattttcttttcaaaaaaaagtctaaaaatataaGTAGAAAAGAAGATGG
ATAAATTACAAGTACTACTTAGAGATGAATAATTCACTATGTAATAGAGA
AAACAATTTTATAGCAAGTACCTTTTCGACCACCGACGAACTTTTCTTTA
TTTGTTTACTAGTCAATAACACTTTGAAGCGCTTTTTCAAAAGTCGGGTA
AGTACTGGCTA Run BLAST on NCBI protein sequence of TCONS_00003976-protein >TCONS_00003976-protein ID=TCONS_00003976-protein|Name=TCONS_00003976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MTKSGSGERERKRGVYYDRFTNENKTERIDFTKRDRVSSLPEVFQPRVHY
WPERYGDGETSDGKNQISELHRRHSWSSGTSYGGFDFRDFNRPSRKLSQQ
SSGHGSSSHSIPEIIEECSGDDESIRPEPEFKQTEYMRCRNCFQKDKTVL
IVKTDKYPYCKKCRDLLRNKNKYGTMIPLMNTEVKKFGPVSGCGGDSASI
SPSRRSRKSSLPETIDLPCIEEPSTGEEGADTKELQLIVEREVNKLLNFG
NANNHHKTTNKGLFRHQKRRNSDNDLELITVGFKNMLMRKNTNYIP Run BLAST on NCBI transcript from alignment at sc0000038:116048..117858 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003976 ID=TCONS_00003976|Name=TCONS_00003976|organism=Clytia hemisphaerica|type=transcript|length=1811bp|location=Sequence derived from alignment at sc0000038:116048..117858 (Clytia hemisphaerica)
TAGCCAGTACTTACCCGACTTTTGAAAAAGCGCTTCAAAGTGTTATTGAC
TAGTAAACAAATAAAGAAAAGTTCGTCGGTGGTCGAAAAGGTACTTGCTA
TAAAATTGTTTTCTCTATTACATAGTGAATTATTCATCTCTAAGTAGTAC
TTGTAATTTATCCATCTTCTTTTCTACttatatttttagacttttttttg
aaaagaaaatataatattaACAACAACAGAAGAAGAAAACGCTgaaaatc
aagaagaaaattgggagtgtttttctttttcattcttgATCGTATCTCAC
GCGGGAGTAAAGTAGGAAattggaaaaagaagaaaaaagaaaaagtcaca
AATTTGGAGAAATTCGAATTATGGTTGTAGAAGACTGACTTATCTTAAAA
TTTGCAGAGCTTTTTGAGTTGTATATCATTGGATGTTTCCTTTTTGTGGT
TGGGCTTCATAATTGTTTTGTATTTGGAATTGACTGGAAATTatcgattt
tttttcaaaatgacgaAATCAGGGAGCGGGGAACGAGAACGAAAAAGAGG
TGTTTACTATGATCGATTTACGAATGAGAATAAAACTGAAAGAATAGATT
TCACAAAAAGAGACCGAGTTTCATCATTACCGGAAGTCTTTCAACCCCGG
GTACACTATTGGCCGGAAAGATACGGTGATGGTGAAACAAGCGATGGAAA
GAACCAAATATCAGAACTTCACCGACGTCATTCGTGGAGCTCCGGTACAA
GTTACGGTGGATTTGACTTCAGAGATTTTAATAGACCTAGCCGAAAATTG
AGTCAACAGTCATCGGGACATGGCAGTTCTAGTCATAGTATACCAGAAAT
TATTGAGGAATGCTCAGGAGATGATGAAAGTATAAGACCGGAGCCAGAAT
TCAAACAAACCGAATATATGAGGTGTAGAAACTGTTTCCAAAAAGATAAA
ACTGTTTTGATAGTGAAAACTGATAAATACCcttattgtaaaaaatgtcg
AGATTTGCTGCGGAATAAGAATAAATACGGAACAATGATACCTTTGATGA
ACACGGAAGTCAAAAAATTTGGACCTGTATCTGGGTGTGGCGGTGATTCG
GCTTCTATTTCACCGTCACGGCGTTCTCGAAAGAGCAGCTTACCTGAAAC
AATAGATCTTCCCTGTATTGAGGAACCATCGACGGGTGAAGAAGGAGCGG
ACACTAAAGAACTACAATTGATCGTCGAACGTGAAGTGAATAAGCTGCTA
AACTTTGGGAACGCTAATAACCACCACAAAACAACGAATAAAGGATTGTT
TCGTCATCAGAAAAGAAGGAATAGTGATAATGACTTAGAATTGATTACAG
TTGGCTTTAAGAATATGTTGATGAGGAAAAATACTAATTATATTCCTTGA
TTGATTTCAAACGTGCTGATGTTATGGCTGATCTCAACCTCGTCcctgtg
tatcccaggctttatttactttactgatggacgccagagagtATTATCTG
GCcttatcagtaagcataaaaaaactgataatacgcagggaacgaggttg
agtTTGAGTTATACTTTCACTAAGGAGAcccacttctcacagacccactt
ggaccccttcccactggaaaaattgttcaGAATATCGCctccggtggaaa
attatactccaatttttgtccccactgaaaataatcaagtaaaccaatcc
tcactaaaaaatattatgctatttttccatccccactgaattttccaact
taaaaacaaaataagaatttaAATCTCCAGCCTTAAAAAATAAGGGACTA
TCAATCCCCAt Coding sequence (CDS) from alignment at sc0000038:116048..117858 >TCONS_00003976 ID=TCONS_00003976|Name=TCONS_00003976|organism=Clytia hemisphaerica|type=CDS|length=891bp|location=Sequence derived from alignment at sc0000038:116048..117858 (Clytia hemisphaerica)
atgacgaAATCAGGGAGCGGGGAACGAGAACGAAAAAGAGGTGTTTACTA
TGATCGATTTACGAATGAGAATAAAACTGAAAGAATAGATTTCACAAAAA
GAGACCGAGTTTCATCATTACCGGAAGTCTTTCAACCCCGGGTACACTAT
TGGCCGGAAAGATACGGTGATGGTGAAACAAGCGATGGAAAGAACCAAAT
ATCAGAACTTCACCGACGTCATTCGTGGAGCTCCGGTACAAGTTACGGTG
GATTTGACTTCAGAGATTTTAATAGACCTAGCCGAAAATTGAGTCAACAG
TCATCGGGACATGGCAGTTCTAGTCATAGTATACCAGAAATTATTGAGGA
ATGCTCAGGAGATGATGAAAGTATAAGACCGGAGCCAGAATTCAAACAAA
CCGAATATATGAGGTGTAGAAACTGTTTCCAAAAAGATAAAACTGTTTTG
ATAGTGAAAACTGATAAATACCcttattgtaaaaaatgtcgAGATTTGCT
GCGGAATAAGAATAAATACGGAACAATGATACCTTTGATGAACACGGAAG
TCAAAAAATTTGGACCTGTATCTGGGTGTGGCGGTGATTCGGCTTCTATT
TCACCGTCACGGCGTTCTCGAAAGAGCAGCTTACCTGAAACAATAGATCT
TCCCTGTATTGAGGAACCATCGACGGGTGAAGAAGGAGCGGACACTAAAG
AACTACAATTGATCGTCGAACGTGAAGTGAATAAGCTGCTAAACTTTGGG
AACGCTAATAACCACCACAAAACAACGAATAAAGGATTGTTTCGTCATCA
GAAAAGAAGGAATAGTGATAATGACTTAGAATTGATTACAGTTGGCTTTA
AGAATATGTTGATGAGGAAAAATACTAATTATATTCCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003976-exon-sc0000038-1491911889:116048..117858 | TCONS_00003976-exon-sc0000038-1491911889:116048..117858 | Clytia hemisphaerica | exon |
| TCONS_00003976-exon-sc0000038-1510915933:116048..117858 | TCONS_00003976-exon-sc0000038-1510915933:116048..117858 | Clytia hemisphaerica | exon |
| TCONS_00003976-exon-sc0000038-1575043694:116048..117858 | TCONS_00003976-exon-sc0000038-1575043694:116048..117858 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:116048..117858 . |
Blast
The following BLAST results are available for this feature:
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