TCONS_00004188 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004188
Unique NameTCONS_00004188
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004188 ID=TCONS_00004188|Name=TCONS_00004188|organism=Clytia hemisphaerica|type=transcript|length=1585bp
GTTCACTGCTCTTTTCTAGTTGCAAACAAAGCAATTCAACAGCGCTACTG
CAAAATTGAAAAGAAGCAATATTACATCACATTAGTGACTCAAGATGCCT
TCATTATCGCGTCGAGCTTGCACCAAAAGTAAAGGACAACCCAACCTTCT
TCACACAGCTTGGTATCGCCATCATCAAAACCCTTACCATCCTCAACAAA
ACCCTGATGGAATCATCAATCTTGGCACTGCTGAAAACAGACTTCTCTTC
GACCTCATTCAAGAGAAATTAGCTGATATCAAACTTGATCAAATGCACGA
AAGTTATACACATTACTGTAAACTGTCCGGTACAGATGCTTTCCGACAAA
AACTGTCGGCATTCTTCAACCGATTCATGCATCCACAAGAGAAGATAGTG
GAACAAGATGTTTATGTGATGAATGGATGTGGAACAGTGATCGAAACTAT
TGGTCGTTCCATCTGCAATGAAGGTGATGGTGTTCTTATACCAGCTCCTT
ACTACACTGGGTTCAAAAGTGACCTGGAACAACGCATTGCTGTCAAAACC
ATCCCTGTTCATCTCGATTGCCAAGGAAAACAAGCTTTTCAAATCACTCT
TCAAAAACTGGAAGAAGCTTTAGAAGGTGCTGAAGACAGTGGCATTCCAG
TCAAAGCTTTGCTCTTATCCAACCCAAACAATCCTTTAGGTACTGTCTAC
ACTGAAGAAGAATTAGAAATGATGGCTGAATTCTGCTACAACAACGACCT
TCATTTGGTTTGTGATGAAATCTACTTGCTTTCAGTTTACGATCAAAATG
CATCTTTCAAAAGTCTTCTTTCTATCAAGAACTTCCACAAATATCGCGAT
CACATTCACGTCGTATGGGGCTTCAGCAAAGATTTCAGTTTATCTGGATT
TCGAGTTGGAGTTGCTATCACCAAAAATGAAGAGTTACAACACGACTTGG
GATCTCAAGGATATTACACCAGTGTTTCCACAGTCACACAATATATCTTG
GAAGAAATGATCACAGATTCCCAATGGCTCGATAAATTGGTTCAAATCAA
TCACCAAAGATTACAACAAAACCGAAACTTGGTTGCCAAGAAACTCTCAC
AAACAAACATCCCTTTCGTTTACCCACAAAGTGGATTATTTGTTTGGATG
AATCTCTCCAAATGCATGAAAGATCAAAGTTTACAAAATGAAACAGAACT
CTTTGAACAGCTGATGAACAATGGTTTATACCTGGTACCAGGACAAGCTT
TTGAAACCAAAGAAAACGGATGGTTTCGAATGATCATTTCAAATGAATAT
CAAACAGTCGAACTTGCTTTAAAACGTCTTTTAAAAACTGTCCGAaattt
ttcttcagattttgTGCAAAGCATTATCCGAAAATCAATCACCTTCGAAG
AAATCGGACATCGACGTGGTTCAACTGAAACCGTTGTTGCCCTGGAAACA
TCCATCCGAAAATTACGtaacaaacaacaaaaagaaatgAGCCAATTCTT
AATTGAATAGACAGttaattgtaaatatttttgtacataaatgaaaattc
aatttaATTGTATATATGTAAATACCTTAATATTT
Run BLAST on NCBI

protein sequence of TCONS_00004188-protein

>TCONS_00004188-protein ID=TCONS_00004188-protein|Name=TCONS_00004188-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MPSLSRRACTKSKGQPNLLHTAWYRHHQNPYHPQQNPDGIINLGTAENRL
LFDLIQEKLADIKLDQMHESYTHYCKLSGTDAFRQKLSAFFNRFMHPQEK
IVEQDVYVMNGCGTVIETIGRSICNEGDGVLIPAPYYTGFKSDLEQRIAV
KTIPVHLDCQGKQAFQITLQKLEEALEGAEDSGIPVKALLLSNPNNPLGT
VYTEEELEMMAEFCYNNDLHLVCDEIYLLSVYDQNASFKSLLSIKNFHKY
RDHIHVVWGFSKDFSLSGFRVGVAITKNEELQHDLGSQGYYTSVSTVTQY
ILEEMITDSQWLDKLVQINHQRLQQNRNLVAKKLSQTNIPFVYPQSGLFV
WMNLSKCMKDQSLQNETELFEQLMNNGLYLVPGQAFETKENGWFRMIISN
EYQTVELALKRLLKTVRNFSSDFVQSIIRKSITFEEIGHRRGSTETVVAL
ETSIRKLRNKQQKEMSQFLIE
Run BLAST on NCBI

transcript from alignment at sc0000039:620887..622471

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004188 ID=TCONS_00004188|Name=TCONS_00004188|organism=Clytia hemisphaerica|type=transcript|length=1585bp|location=Sequence derived from alignment at sc0000039:620887..622471 (Clytia hemisphaerica)
AAATATTAAGGTATTTACATATATACAATtaaattgaattttcatttatg
tacaaaaatatttacaattaaCTGTCTATTCAATTAAGAATTGGCTcatt
tctttttgttgtttgttaCGTAATTTTCGGATGGATGTTTCCAGGGCAAC
AACGGTTTCAGTTGAACCACGTCGATGTCCGATTTCTTCGAAGGTGATTG
ATTTTCGGATAATGCTTTGCAcaaaatctgaagaaaaattTCGGACAGTT
TTTAAAAGACGTTTTAAAGCAAGTTCGACTGTTTGATATTCATTTGAAAT
GATCATTCGAAACCATCCGTTTTCTTTGGTTTCAAAAGCTTGTCCTGGTA
CCAGGTATAAACCATTGTTCATCAGCTGTTCAAAGAGTTCTGTTTCATTT
TGTAAACTTTGATCTTTCATGCATTTGGAGAGATTCATCCAAACAAATAA
TCCACTTTGTGGGTAAACGAAAGGGATGTTTGTTTGTGAGAGTTTCTTGG
CAACCAAGTTTCGGTTTTGTTGTAATCTTTGGTGATTGATTTGAACCAAT
TTATCGAGCCATTGGGAATCTGTGATCATTTCTTCCAAGATATATTGTGT
GACTGTGGAAACACTGGTGTAATATCCTTGAGATCCCAAGTCGTGTTGTA
ACTCTTCATTTTTGGTGATAGCAACTCCAACTCGAAATCCAGATAAACTG
AAATCTTTGCTGAAGCCCCATACGACGTGAATGTGATCGCGATATTTGTG
GAAGTTCTTGATAGAAAGAAGACTTTTGAAAGATGCATTTTGATCGTAAA
CTGAAAGCAAGTAGATTTCATCACAAACCAAATGAAGGTCGTTGTTGTAG
CAGAATTCAGCCATCATTTCTAATTCTTCTTCAGTGTAGACAGTACCTAA
AGGATTGTTTGGGTTGGATAAGAGCAAAGCTTTGACTGGAATGCCACTGT
CTTCAGCACCTTCTAAAGCTTCTTCCAGTTTTTGAAGAGTGATTTGAAAA
GCTTGTTTTCCTTGGCAATCGAGATGAACAGGGATGGTTTTGACAGCAAT
GCGTTGTTCCAGGTCACTTTTGAACCCAGTGTAGTAAGGAGCTGGTATAA
GAACACCATCACCTTCATTGCAGATGGAACGACCAATAGTTTCGATCACT
GTTCCACATCCATTCATCACATAAACATCTTGTTCCACTATCTTCTCTTG
TGGATGCATGAATCGGTTGAAGAATGCCGACAGTTTTTGTCGGAAAGCAT
CTGTACCGGACAGTTTACAGTAATGTGTATAACTTTCGTGCATTTGATCA
AGTTTGATATCAGCTAATTTCTCTTGAATGAGGTCGAAGAGAAGTCTGTT
TTCAGCAGTGCCAAGATTGATGATTCCATCAGGGTTTTGTTGAGGATGGT
AAGGGTTTTGATGATGGCGATACCAAGCTGTGTGAAGAAGGTTGGGTTGT
CCTTTACTTTTGGTGCAAGCTCGACGCGATAATGAAGGCATCTTGAGTCA
CTAATGTGATGTAATATTGCTTCTTTTCAATTTTGCAGTAGCGCTGTTGA
ATTGCTTTGTTTGCAACTAGAAAAGAGCAGTGAAC

Coding sequence (CDS) from alignment at sc0000039:620887..622471

>TCONS_00004188 ID=TCONS_00004188|Name=TCONS_00004188|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at sc0000039:620887..622471 (Clytia hemisphaerica)
CTATTCAATTAAGAATTGGCTcatttctttttgttgtttgttaCGTAATT
TTCGGATGGATGTTTCCAGGGCAACAACGGTTTCAGTTGAACCACGTCGA
TGTCCGATTTCTTCGAAGGTGATTGATTTTCGGATAATGCTTTGCAcaaa
atctgaagaaaaattTCGGACAGTTTTTAAAAGACGTTTTAAAGCAAGTT
CGACTGTTTGATATTCATTTGAAATGATCATTCGAAACCATCCGTTTTCT
TTGGTTTCAAAAGCTTGTCCTGGTACCAGGTATAAACCATTGTTCATCAG
CTGTTCAAAGAGTTCTGTTTCATTTTGTAAACTTTGATCTTTCATGCATT
TGGAGAGATTCATCCAAACAAATAATCCACTTTGTGGGTAAACGAAAGGG
ATGTTTGTTTGTGAGAGTTTCTTGGCAACCAAGTTTCGGTTTTGTTGTAA
TCTTTGGTGATTGATTTGAACCAATTTATCGAGCCATTGGGAATCTGTGA
TCATTTCTTCCAAGATATATTGTGTGACTGTGGAAACACTGGTGTAATAT
CCTTGAGATCCCAAGTCGTGTTGTAACTCTTCATTTTTGGTGATAGCAAC
TCCAACTCGAAATCCAGATAAACTGAAATCTTTGCTGAAGCCCCATACGA
CGTGAATGTGATCGCGATATTTGTGGAAGTTCTTGATAGAAAGAAGACTT
TTGAAAGATGCATTTTGATCGTAAACTGAAAGCAAGTAGATTTCATCACA
AACCAAATGAAGGTCGTTGTTGTAGCAGAATTCAGCCATCATTTCTAATT
CTTCTTCAGTGTAGACAGTACCTAAAGGATTGTTTGGGTTGGATAAGAGC
AAAGCTTTGACTGGAATGCCACTGTCTTCAGCACCTTCTAAAGCTTCTTC
CAGTTTTTGAAGAGTGATTTGAAAAGCTTGTTTTCCTTGGCAATCGAGAT
GAACAGGGATGGTTTTGACAGCAATGCGTTGTTCCAGGTCACTTTTGAAC
CCAGTGTAGTAAGGAGCTGGTATAAGAACACCATCACCTTCATTGCAGAT
GGAACGACCAATAGTTTCGATCACTGTTCCACATCCATTCATCACATAAA
CATCTTGTTCCACTATCTTCTCTTGTGGATGCATGAATCGGTTGAAGAAT
GCCGACAGTTTTTGTCGGAAAGCATCTGTACCGGACAGTTTACAGTAATG
TGTATAACTTTCGTGCATTTGATCAAGTTTGATATCAGCTAATTTCTCTT
GAATGAGGTCGAAGAGAAGTCTGTTTTCAGCAGTGCCAAGATTGATGATT
CCATCAGGGTTTTGTTGAGGATGGTAAGGGTTTTGATGATGGCGATACCA
AGCTGTGTGAAGAAGGTTGGGTTGTCCTTTACTTTTGGTGCAAGCTCGAC
GCGATAATGAAGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002336XLOC_002336Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004188-proteinTCONS_00004188-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004188-exon-sc0000039-1491911889:620887..622471TCONS_00004188-exon-sc0000039-1491911889:620887..622471Clytia hemisphaericaexon
TCONS_00004188-exon-sc0000039-1510915933:620887..622471TCONS_00004188-exon-sc0000039-1510915933:620887..622471Clytia hemisphaericaexon
TCONS_00004188-exon-sc0000039-1575043694:620887..622471TCONS_00004188-exon-sc0000039-1575043694:620887..622471Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:620887..622471 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.145966	0.107476	0	0.112055	0.0673604	0.124133	0.193565	0.0605941	0.197612	0.136769	2.11271	1.39144	0.803014	0.847688	0.414304	0.604581	3.59309	9.30986	8.0463	12.552	0.930065	1.59339	1.17233	0.741539	25.361	35.2002	0.50664	0.184837
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015422PyrdxlP-dep_Trfase_sub2
IPR015421PyrdxlP-dep_Trfase_major_sub1
IPR004839Aminotransferase_I/II
IPR004838NHTrfase_class1_PyrdxlP-BS
IPR015424PyrdxlP-dep_Trfase
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0030170pyridoxal phosphate binding
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
Blast
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BLAST of TCONS_00004188 vs. Swiss-Prot (Human)
Match: 1A1L2 (Probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 OS=Homo sapiens GN=ACCSL PE=2 SV=3)

HSP 1 Score: 273.478 bits (698), Expect = 1.535e-83
Identity = 137/397 (34.51%), Postives = 232/397 (58.44%), Query Frame = 2 
Query:  170 HHQNPYHPQQNPDGIINLGTAENRLLFDLIQEKLADIKLDQMHESYTHYCKLSGTDAFRQKLSAFFNRFMHPQEKIVEQDVYVMNGCGTVIETIGRSICNEGDGVLIPAPYYTGFKSDLEQRIAVKTIPVHLDCQ----GKQAFQITLQKLEEALEGAEDSGIPVKALLLSNPNNPLGTVYTEEELEMMAEFCYNNDLHLVCDEIYLLSVYDQNASFKSLLSIKNFHKYRDHIHVVWGFSKDFSLSGFRVGVAITKNEELQHDLGSQGYYTSVSTVTQYILEEMITDSQWLDKL-VQINHQRLQQNRNLVAKKLSQTNIPFVYPQSGLFVWMNLSKCMKDQSLQNETELFEQLMNNGLYLVPGQAFETKENGWFRMIISNEYQTVELALKRLLKTVR 1345
            + ++ YH  +N  G INLGT+EN+L  DL+ E+L +  ++ + ++   Y    G    R++++ F   +     ++  ++V V+NGC +V   +   +C+ G+  L+PAP+Y GF         V+ IPVHL+ +        FQ+T+ KLEEAL  A   G  V+ L+L NP NPLG +Y+ + L    EF    +LH++ DEIY+LSV+D++ +F S+LS+K+     +  HV+WG SKDF +SGFR G   T N+E+   + + GY  S+S +TQ+ L +++ +++W+DK+ +  N  RL++    +  +L    IPF    SGL+VW+NL K +   + + E  L+ + ++N L L  G+ +  KE GWF +I ++E   ++LA++R    ++
Sbjct:  156 YQKDKYHKDKNTLGFINLGTSENKLCMDLMTERLQESDMNCIEDTLLQYPDWRGQPFLREEVARFLTYYCRAPTRLDPENVVVLNGCCSVFCALAMVLCDPGEAFLVPAPFYGGFAFSSRLYAKVELIPVHLESEVTVTNTHPFQLTVDKLEEALLEARLEGKKVRGLVLINPQNPLGDIYSPDSLMKYLEFAKRYNLHVIIDEIYMLSVFDESITFHSILSMKSLPD-SNRTHVIWGTSKDFGISGFRFGALYTHNKEVASAVSAFGYLHSISGITQHKLCQLLQNTEWIDKVYLPTNCYRLREAHKYITAELKALEIPFHNRSSGLYVWINLKKYLDPCTFEEERLLYCRFLDNKLLLSRGKTYMCKEPGWFCLIFADELPRLKLAMRRFCDVLQ 551
The following BLAST results are available for this feature:
BLAST of TCONS_00004188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
1A1L21.535e-8334.51Probable inactive 1-aminocyclopropane-1-carboxylat... [more]
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