TCONS_00004060 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004060
Unique NameTCONS_00004060
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004060 ID=TCONS_00004060|Name=TCONS_00004060|organism=Clytia hemisphaerica|type=transcript|length=3445bp
CTGAATGTTTAATCGTCTTATTTACAAGGGGATAATTGTATTGCCCTCTC
ATTTGATTTTGAGAAATCTATTCACTGAAATTTGATCATTTCATACTTTC
ATTAGGGTTAATTTAATAAAAtgtcacagtctatcaagattTCGTTACCT
TTGCTTATAAACATTGCAGTATTTTTCCCAGCTTTTGGCATCATTTCTTG
TGTCATATTATCAATCTGGTATCACCCACATCTTGTTACATCAACTCATT
GTAAAgtcaaaaatttccttccctCGATTAGCTCAGCAAGCCACTTACCA
CCAGAGATTTACGTATGGAGAACTTGTATTGGAATACATTCTGGTTGTCG
TTATTTATTTGGATATATTTGTTACCGTTTCTACATGAATGCTGCCTCGT
CAAGCACTATACCTTATATTCGGATACTGATCAAGTTAAATTTCATTTGC
AAATGGACTGAAGTTACATCTTTGGTTTTGCTATCTGTTATTTCTTCTGA
AGATAATTATGACTACCATGCACTATCGTTCGAAAACTTCATTGTTTGTG
CATTGTTGCATATGTTGATGACttgttatattttcttcaaactGGGCGAA
GTGCGTTATAATCAAAAGaATTACCGTTCATTGAGAATGAAGATCATCCT
TTTCCTTTCATCCATACTTTCTTTGATGTTACTGGGTTATTTCTTTTGGA
GACATAATACTTACTGCGAACCCAATGTATATTCACTGTTCGCATTTTTC
GAATACGTATTCGTGTTTTGTAACATTGGTTTCCATTGGACATGTTGCTA
TGACTTCCAAGATGTTCATTTGGAGGTGAGTTTACCACAGTTAACACAAC
AACAAGACAAAGAACATTAGAATATTTTTGTATCTTAGCAGTTTGAAAGA
TTGCGAATTGATTGATCTAATCGAACCGACagtttttagaaaataaagtA
TTACCGCTTCCAATTTTTCTCTTGTGagcactttttttatatttttacaa
cACTTTGCACATAGTTTtaaatatttagattttttatcaatattttcaat
GCTCACACTTATAAATTTCGAATTCATCCCTCGACTTGTCAAACAACTCA
ATGCAGACTTGCCAAACAATTCACCTCAGACAGGAACTTTTGACTGAACA
ATCACTTCACTTTTTCATACAAGGCACTGGTACAGGGATTCCAGTACACT
GGGCTTAAAAAGTCGACGTTGGATCTATGACATAACAAAGTAGAAACGAT
GAAtaacaaaaacgaaaaaacgcttgacaaacaaacaaacaaaggatTTA
ACAACAGTACTTGTTGACGTCACTGTGACATATTTTGATTGACAGACGAC
AAATTCTACGAAACCGGACCAATTACGTAACAATGACATTACTATACACT
GACTGATCCTTAAAGATTATATGTGTACAAAGTGTTTCAATATTCGATAA
TATCCTTTTTATAATTCTAGTGATTACGGTATagcatattttttcatttt
ttccacaTATTTATTTACACATACCCTTAAAATATTCCAACAATGAAATT
GTTGTCTTAAATTTcgtattttatgaaaataaatttatattaTTATTGCA
TTTTTTACAGGAGGAATAAATTGTCactttttagccaaattttagaTAGT
TATATAAATACACGAATTCCAATAATGAACTAAGctttatattttcaaat
ataaCTTTCCGGAGGTGCAAAGATAGGAAAGAGTGGAAGGGACATGCGTT
GTGTACGGTCGATCTTCTTTCGCTTTTTCGATGTCTTTTTCTGCTCTCCT
TCGTATTGTTCAGAGACCTTCAGTCCTCCTCCTGATTGCTTCCTGTTTtc
actttttctgtttttctttaaagcttTAATTTCGGATGGTTTAACATCAT
CATTTTTTGCATTTGAGCTAAGTTTACGTAATGCATTAGTCACTGTGTTA
TACTGAGAAGCAATATCTTTGACACTGAAACTTTTACTTTTGCCAAGTTT
TTTCTCGTTCTCTTTCTCATCgatttgtttactttgtgaCGTCACTGTAC
TAGTGACTGGTATGGATTTCTCACTGCCGAAATCGGAGATAATACCAGAA
TCTGTCCTTTGTAAATTTGGTACTTGCATAACGCTTGTTTTTCGACGTGG
TTTTCGTtctttcagcctcgttttgacgagaGTCTCTTTCCGTTCTTCCT
CtgctaaaatatttttccatgtTTCAAGATTTTTCATCAGTTTCACACGA
GAACATCTCAAAGAATATTTACGTAGTTTTTCTTTAACATTAAAATGTAA
CTTATCATTCACACAATCGATGGGCTGTTTTCCAACTGAGTTTTCTATGA
AAGGGTTACTTCCTCCTTCCATCAGTAAATCAAGTATAGCCTCGTTTCCA
AGTTGTGATGCCACATGGAGGCAAGTATTTCCTTCTTTATTTCGATAATT
TACGTTAATACCATGCTCAATCAAAACACGTACTGTATTTGGGAAATCTT
TTTGAACTGCGTGGTGTAGCAATCCCATTCCATCTTTACTTGTGGTTACA
AAAATACGTTCTTTATTCCAACAATGACGTAACATAAAGTCCACTAAGGT
CCAATCGTTCTCTACAGTCGCCTCTTTtaataatttacagaccagatact
GTTTCCTTGCTTCAGGTGGTGGGATTGGTAACAATTCCTTTTTAACGATC
GacatctctgaaaaaacttctcTTTCCGAACACCTTTCTATCGACGATAC
CAAAACcgactaaccaagcaaaaaaacCTTTAACCAATTAGGAGATGATT
GTTATTGTTTCTTAATTCGGGATTACTGACTCATCCGTCCGcttaatttg
aaaaacttttttttaattactccataaattaatgacattcgaatgaATAA
TATCTTCCTTCATCCAACGTAACTTCACCTCAAAATGATTTGCTTTCTTT
TGCTACCAGAGTGATCTCTATGGTGctcttaaaaattttcttcttaagtg
gttgtttttcttttacGAAAACTCGGTGTATATTTCACAAAGTTCTGCGT
CAAACGTTAAAACAGTGTGAATGAGTGATGTTTGTGAACTTCTTGAAAAG
TGCATCCAAAATATACAACACGTCTTCACGTAGGTTAACTATCACTCCAA
ATGAACTTGTTTGAaagtttatttgctttttcGTCAACCAATGGTTTCTT
ACTATAAACAACTCAGTGATTAAAGATGTCTAATTTTTGGAAACAATTAT
CTTTATTTCGGTCTATTTACGTCGTCTTTCATACGATTCCCACAAAACGT
AACTCATTgtatttgtaaacaaaactcTGACATCCTCTCGGAAAGATATT
CAATACATCTTATTTCCTCTCCTTAGCTCTTTATAACAATCCGTCTATAC
AATGTAAAAGTCttttcgaacaaatttgcgaAAAACTAATCATTC
Run BLAST on NCBI

transcript from alignment at sc0000039:655785..663797+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004060 ID=TCONS_00004060|Name=TCONS_00004060|organism=Clytia hemisphaerica|type=transcript|length=8013bp|location=Sequence derived from alignment at sc0000039:655785..663797+ (Clytia hemisphaerica)
CTGAATGTTTAATCGTCTTATTTACAAGGGGATAATTGTATTGCCCTCTC
ATTTGATTTTGAGAAATCTATTCACTGAAATTTGATCATTTCATACTTTC
ATTAGGGTTAATTTAATAAAAtgtcacagtctatcaagattTCGTTACCT
TTGCTTATAAACATTGCAGTATTTTTCCCAGCTTTTGGCATCATTTCTTG
TGTCATATTATCAATCTGGTATCACCCACATCTTGTTACATCAACTCATT
GTAAAGTAAGTAATATTTAAAGAAAACACTGGAAAACTATAATTTGATca
tttgttatgatttttatgaaatggTAAAAGACTTTTCTTTCAAAGAGGCT
CGCTCAAACTACCTTCAAACAGGTAACTACTGAAAAAAGGAGCAATCAGT
CGCCTCTGACTGCAGTCCAAAAACTTATTATATTATGACGATAATTTTTA
CAggtcaaaaatttccttccctCGATTAGCTCAGCAAGCCACTTACCACC
AGAGATTTACGTATGGAGAACTTGTATTGGAATACATTCTGGTTGTCGTT
ATTTATTTGGATATATTTGTTACCGTTTCTACATGAATGCTGCCTCGTCA
AGCACTATACCTTATATTCGGATACTGATCAAGTTAAATTTCATTTGCAA
ATGGACTGAAGTTACATCTTTGGTTTTGCTATCTGTTATTTCTTCTGAAG
ATAATTATGGTAAGACACACTCtgcatttctttgttttttcctaTTCCTc
tatattacacccctgtctcacaacttCGGCGGATCTTTTCCCActgtggg
gataaaaatttatattgaaatctcaatggggatagaaatactACCAGtag
ataccccttaaaacctacaataAAAAAAGGTACCCCCTATATCCTGATAG
AGAAAACAATAAGGGCTGAAACATTTTCTGGTGAGTCTAGGCTACCTATG
AATTCTTCCCTTGGTAtggttttttgtaaaagctgctaagaaaattttta
ttccttcgtgaaaaaatgcaattttagctatttaccccttaaaacctaca
aaatggttttctgNAAAAACTTATTATATTATGACGATAATTTTTACAgg
tcaaaaatttccttccctCGATTAGCTCAGCAAGCCACTTACCACCAGAG
ATTTACGTATGGAGAACTTGTATTGGAATACATTCTGGTTGTCGTTATTT
ATTTGGATATATTTGTTACCGTTTCTACATGAATGCTGCCTCGTCAAGCA
CTATACCTTATATTCGGATACTGATCAAGTTAAATTTCATTTGCAAATGG
ACTGAAGTTACATCTTTGGTTTTGCTATCTGTTATTTCTTCTGAAGATAA
TTATGGTAAGACACACTCtgcatttctttgttttttcctaTTCCTctata
ttacacccctgtctcacaacttCGGCGGATCTTTTCCCActgtggggata
aaaatttatattgaaatctcaatggggatagaaatactACCAGtagatac
cccttaaaacctacaataAAAAAAGGTACCCCCTATATCCTGATAGAGAA
AACAGTGAGGGCTGAAACATTTTCTGGTGAGTCTAGGCTACCTATGAATT
TCTTCCCTGGGTATGGTTTTTTTTAAACCTGCTAAGAAAATTTAGATcat
tggtacctaaatattttcaaaactgtacgttaaaatcaaattacacctta
aaacctacaaaaatgaTCAGTACAAAGTACTCTGTACCAAAAACAAGACA
TACTTCAGAATGAATTGTTCATatttgttaaattttcataTAACGTTTCA
TTGGTGGGGGGGGGTCCATGCAAATCAtgcaaaagttgcaattttgtTAT
AATACTCGTGTAGAAACATTCAGCTAATTTGtacaaagtttttaaaatta
aaaacaagcaGACCTTATCAGAATGATCAAATTTTTCACgtttttcttca
tcttccaGACTACCATGCACTATCGTTCGAAAACTTCATTGTTTGTGCAT
TGTTGCATATGTTGATGACttgttatattttcttcaaactGGGCGAAGTG
CGTTATAATCAAAAGGTAACCTTAGATTCCCTTACATTATGTGGCTTCTA
AAATGATCAAATTCGGCTGAGATTCTTTACACCTTTTTTATTCACTGTTA
TACCGGTTGCGCcagaaaaaaaagtatacagggtTGTTAAGTTGTTGTGA
GCTTAcggttaaagatttttttatcgaTTCTTGTTTTATTCTATCCATGA
tgtgcaccattgcaatgtcttccacggacccaacagctgattggttgaaa
gtgacgtattgactgatttttggTATATGAAACTTCAAAATTGGTTCGCG
AAACgaaaattttaccacaccatactacttttaacgaagttaaagtcacc
catagcatttagatatcgactttattctttttttatgagattcccaaaag
atcaaacttaaaaagtatGNcattctttttttatgagattcccaaaagat
caaacttaaaaagtgttttaggattttatttctaaccgagttgtttttcc
tcaatttacagataactgaaaaaatcacatttaaatttacttttttatcg
atatttttacagaattctatatattaatacgcttaaacgtgtgtgtttac
aacattttgtaaaaagttttcgaaaatctaacaaagctctacaaagcctc
ctcttcatggcctTGAATCATCATCTTTTTGCATCctaagcagatttcct
accactagactaactttgagaccccaagataccattttctattcaccaag
tctttggagcttgatgggttaaaatcaaccatcttcccattttttttttc
tcattttaaagaattcttattcttaaaactttctgtttacaatagcggct
ccatatcactttcaaaacttttcaaagtctatcaaagtcaccctcgaatg
tccaaccacgatggctagccacgatggctaaaaagatttaaaatatactt
ttaccatttatttaattgtggttaaaaattgcaatgcaatgttattttct
ttctcctttgtatttcaaaatcaaaatcaaatcatcaatcggcggctatc
tttcttccgttagaattttttagatgtgtagtgattcactggaatgggac
acgcagcgtgcgacgctgcgcatacggctagttaggatttaaagagttaa
agtcgattccaaaaaaaatcccaagacacttttttagttcaatctattgg
gaacatagtatcgaaattattttttcaaaattcaaaagctatgggtgact
ttaacttctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNttattggctttcagaaaatatatactttt
gatatataaaaatttgttgttctaaagatatgatcaattaaagagaatgt
gtcaagaaaggtgaacacatacctgacctactcaaaactttaaaattcat
taaaaacaggGAATCAAAATTTGAACGAAGGATCAAAactatcatcaaaa
aatttaatcGAAATGGGATTTTAAGCATTGTTTTGAGGGAAATattgttt
ttggacctaccttggaggtcctataaattaacccatgtccgtccgtccgt
ccgtctgttaccagcttttctcgagattggctcattagttttttcagatt
tttggcacaaagatgcaatatcttgacaaacctgtttactttttttctgg
tgcacccggtataacaGTGAATAAAAAATAAGATTGTTGGGCTTTTGTTT
TGCGTTTTCTTTCATCAGAAAGAGGCTTACGCTGTTGTCCTgtagtttta
atttttgggcCATTGGACAAAGTTTTATTACATATATTAATGAAGCAAAC
TGTAAGATATGTAATTAAATATTTTATGTAATTATGTATAATCTGTGGtg
aatttcttctttcttcttcttctagaATTACCGTTCATTGAGAATGAAGA
TCATCCTTTTCCTTTCATCCATACTTTCTTTGATGTTACTGGGTTATTTC
TTTTGGAGACATAATACTTACTGCGAACCCAATGGTATAACCTTTTTTGT
TAACCGTTTACTTTTTTGAAGCGGGCTAcgcggctttttgcgcaatgcaa
ttggtttttttcgcatgacgacgccAGGCCTACACAGGCCAGAATTGCCC
GTCGTTTGGAAatttcattgtgacgtcactttttcaaaggaaaattaacA
TGCGTtgactgtactgaaaatattgccctcggtcaatgcaacaacctcgc
aagctcggtcgttacttgacctcgggcaatatttctcagtacagccctca
ctagccggtcattattgtattagaatTATTATAAAGGGTTATTTTTCCTC
GATATAACTAACCTACACTCCGTGCTGTTAATCTGTCAGCCTTATTGTTG
GTTTAACTTTCGTCTTTTGGTTTCCAATGCAAGCACATTCCCATTCAATT
TATGAATACTCCAAATTTGTGTTTTGCTTTTAGGAAGTTTGAGATTTTCT
TAGAATCattaagaaatttaaattttattatACTTTAAAAGTTCCTTGAC
TCACAAACTTATTATCAAAAGTTgtacatttttctgtaaaacactttttt
ctgtgttgctttttttacttgacttaaaatattctctttctatCTCTTCA
GTATATTCACTGTTCGCATTTTTCGAATACGTATTCGTGTTTTGTAACAT
TGGTTTCCATTGGACATGTTGCTATGACTTCCAAGATGTTCATTTGGAGG
TGAGTTTACCACAGTTAACACAACAACAAGACAAAGAACATTAGAATATT
TTTGTATCTTAGCAGTTTGAAAGATTGCGAATTGATTGATCTAATCGAAC
CGACagtttttagaaaataaagtATTACCGCTTCCAATTTTTCTCTTGTG
agcactttttttatatttttacaacACTTTGCACATAGTTTtaaatattt
agattttttatcaatattttcaatGCTCACACTTATAAATTTCGAATTCA
TCCCTCGACTTGTCAAACAACTCAATGCAGACTTGCCAAACAATTCACCT
CAGACAGGAACTTTTGACTGAACAATCACTTCACTTTTTCATACAAGGCA
CTGGTACAGGGATTCCAGTACACTGGGCTTAAAAAGTCGACGTTGGATCT
ATGACATAACAAAGTAGAAACGATGAAtaacaaaaacgaaaaaacgcttg
acaaacaaacaaacaaaggatTTAACAACAGGTAGGAAGCCattcactct
ctctaattcgaacgcCCATTATCCAAGtctttccataattcgaattcAGA
GATTAGTTCTTTTCTTATCCCTCTGCAGGGAAGTTGTTTGAAAAACGTTA
CCTTCTCTTTAATTCGACGAAAACTTTGATCTTTTGAAATATCGAAATAG
AGAGAGCTTCACTgtgatattttctttctttctctgTGCGACATTGAGAC
AATGAacacttattaaaaaaacaactaCTCAAACTACGATATTTACAACG
AAACGGTGGCATCTTGAACCTGTTGATCAAAGACAAATTCTACCTGTTTA
TATTTCTTTCTATGACCAACAAATATGATGTCAATACTGTAAAGTGTTCA
GTAGAGAAAATAAAGGATCAAAAATAGTTTGCAGAAGAACTTACAAGACG
ACATCGTTTAAATTTGTTTTACTAGTACTTGTTGACGTCACTGTGACATA
TTTTGATTGACAGACGACAAATTCTACGAAACCGGACCAATTACGTAACA
ATGACATTACTATACACTGACTGATCCTTAAAGATTATATGTGTACAAAG
TGTTTCAATATTCGATAATATCCTTTTTATAATTCTAGTGATTACGGTAT
agcatattttttcattttttccacaTATTTATTTACACATACCCTTAAAA
TATTCCAACAATGAAATTGTTGTCTTAAATTTcgtattttatgaaaataa
atttatattaTTATTGCATTTTTTACAGGAGGAATAAATTGTCacttttt
agccaaattttagaTAGTTATATAAATACACGAATTCCAATAATGAACTA
AGctttatattttcaaatataaCTTTCCGGAGGTGCAAAGATAGGAAAGA
GTGGAAGGGACATGCGTTGTGTACGGTCGATCTTCTTTCGCTTTTTCGAT
GTCTTTTTCTGCTCTCCTTCGTATTGTTCAGAGACCTTCAGTCCTCCTCC
TGATTGCTTCCTGTTTtcactttttctgtttttctttaaagcttTAATTT
CGGATGGTTTAACATCATCATTTTTTGCATTTGAGCTAAGTTTACGTAAT
GCATTAGTCACTGTGTTATACTGAGAAGCAATATCTTTGACACTGAAACT
TTTACTTTTGCCAAGTTTTTTCTCGTTCTCTTTCTCATCgatttgtttac
tttgtgaCGTCACTGTACTAGTGACTGGTATGGATTTCTCACTGCCGAAA
TCGGAGATAATACCAGAATCTGTCCTTTGTAAATTTGGTACTTGCATAAC
GCTTGTTTTTCGACGTGGTTTTCGTtctttcagcctcgttttgacgagaG
TCTCTTTCCGTTCTTCCTCtgctaaaatatttttccatgtTTCAAGATTT
TTCATCAGTTTCACACGAGAACATCTCAAAGAATATTTACGTAGTTTTTC
TTTAACATTAAAATGTAACTTATCATTCACACAATCGATGGGCTGTTTTC
CAACTGAGTTTTCTATGAAAGGGTTACTTCCTCCTTCCATCAGTAAATCA
AGTATAGCCTCGTTTCCAAGTTGTGATGCCACATGGAGGCAAGTATTTCC
TTCTTTATTTCGATAATTTACGTTAATACCATGCTCAATCAAAACACGTA
CTGTATTTGGGAAATCTTTTTGAACTGCGTGGTGTAGCAATCCCATTCCA
TCTTTACTTGTGGTTACAAAAATACGTTCTTTATTCCAACAATGACGTAA
CATAAAGTCCACTAAGGTCCAATCGTTCTCTACAGTCGCCTCTTTtaata
atttacagaccagatactGTTTCCTTGCTTCAGGTGGTGGGATTGGTAAC
AATTCCTTTTTAACGATCGacatctctgaaaaaacttctcTTTCCGAACA
CCTTTCTATCGACGATACCAAAACcgactaaccaagcaaaaaaacCTTTA
ACCAATTAGGAGATGATTGTTATTGTTTCTTAATTCGGGATTACTGACTC
ATCCGTCCGcttaatttgaaaaacttttttttaattactccataaattaa
tgacattcgaatgaATAATATCTTCCTTCATCCAACGTAACTTCACCTCA
AAATGATTTGCTTTCTTTTGCTACCAGAGTGATCTCTATGGTGctcttaa
aaattttcttcttaagtggttgtttttcttttacGAAAACTCGGTGTATA
TTTCACAAAGTTCTGCGTCAAACGTTAAAACAGTGTGAATGAGTGATGTT
TGTGAACTTCTTGAAAAGTGCATCCAAAATATACAACACGTCTTCACGTA
GGTTAACTATCACTCCAAATGAACTTGTTTGAaagtttatttgctttttc
GTCAACCAATGGTTTCTTACTATAAACAACTCAGTGATTAAAGATGTCTA
ATTTTTGGAAACAATTATCTTTATTTCGGTCTATTTACGTCGTCTTTCAT
ACGATTCCCACAAAACGTAACTCATTgtatttgtaaacaaaactcTGACA
TCCTCTCGGAAAGATATTCAATACATCTTATTTCCTCTCCTTAGCTCTTT
ATAACAATCCGTCTATACAATGTAAAAGTCttttcgaacaaatttgcgaA
AAACTAATCATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002273XLOC_002273Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004060-exon-sc0000039-1491911889:655785..656039TCONS_00004060-exon-sc0000039-1491911889:655785..656039Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1510915933:655785..656039TCONS_00004060-exon-sc0000039-1510915933:655785..656039Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1575043694:655785..656039TCONS_00004060-exon-sc0000039-1575043694:655785..656039Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1491911889:656884..657139TCONS_00004060-exon-sc0000039-1491911889:656884..657139Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1510915933:656884..657139TCONS_00004060-exon-sc0000039-1510915933:656884..657139Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1575043694:656884..657139TCONS_00004060-exon-sc0000039-1575043694:656884..657139Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1491911889:657743..657849TCONS_00004060-exon-sc0000039-1491911889:657743..657849Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1510915933:657743..657849TCONS_00004060-exon-sc0000039-1510915933:657743..657849Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1575043694:657743..657849TCONS_00004060-exon-sc0000039-1575043694:657743..657849Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1491911889:659910..660018TCONS_00004060-exon-sc0000039-1491911889:659910..660018Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1510915933:659910..660018TCONS_00004060-exon-sc0000039-1510915933:659910..660018Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1575043694:659910..660018TCONS_00004060-exon-sc0000039-1575043694:659910..660018Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1491911889:660636..661215TCONS_00004060-exon-sc0000039-1491911889:660636..661215Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1510915933:660636..661215TCONS_00004060-exon-sc0000039-1510915933:660636..661215Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1575043694:660636..661215TCONS_00004060-exon-sc0000039-1575043694:660636..661215Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1491911889:661660..663797TCONS_00004060-exon-sc0000039-1491911889:661660..663797Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1510915933:661660..663797TCONS_00004060-exon-sc0000039-1510915933:661660..663797Clytia hemisphaericaexon
TCONS_00004060-exon-sc0000039-1575043694:661660..663797TCONS_00004060-exon-sc0000039-1575043694:661660..663797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:655785..663797 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0477601	0.0396287	0.15126	0.0812722	0.312114	0.504847	0.164225	0.186691	0.699713	0.21597	0.38596	0.311377	0.143735	0.249466	0.548246	0.0600479	0.392615	0.544352	0.483349	0.46268	0.214139	0.279197	0.207311	0.503076	0.252424	0	0.0541171	0.0549223
Blast
[Close]
BLAST of TCONS_00004060 vs. Swiss-Prot (Human)
Match: PGAP2 (Post-GPI attachment to proteins factor 2 OS=Homo sapiens GN=PGAP2 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.272e-28
Identity = 79/252 (31.35%), Postives = 137/252 (54.37%), Query Frame = 1 
Query:  112 FNKMSQSIKISLPLLINIAVFFPAFGIISCVILSIWYHPHLVTSTHCKVKNFLPSISSA-SHLPPEIYVWRTCIGIHSGCRYLFGYICYRFYMNAASSSTIPYIRILIKLNFICKWTEXXXXXXXXXXXXEDNYDYHALSFENFIVCALLHMLMTCYIFFKLGEVRYNQKNYRSLRMKXXXXXXXXXXXXXXGYFFWRHNTYCEPNVYSLFAFFEYVFVFCNIGFHWTCCYDFQDVHLEVSLPQLTQQQDKE 864
             ++    +++   ++  + V  P    + C++ S+ +H    T+THC V N+LPS+SSA     P+ YVWR CIG+HS  R+L  +  +  Y++  S  +    R L +LNF     E  +L++L+ +SS +++  H  +F  FI  +L HML+TC ++    +   +Q++ +S   K  LF+ + +S       ++RHN YCE  VY++FA  EY  V  N+ FH T  +DF +  L ++    +Q ++K 
Sbjct:    8 LDRDGTLVRLRFTMVALVTVCCPLVAFLFCILWSLLFHFKETTATHCGVPNYLPSVSSAIGGEVPQRYVWRFCIGLHSAPRFLVAFAYWNHYLSCTSPCSC--YRPLCRLNFGLNVVENLALLVLTYVSSSEDFTIHENAFIVFIASSLGHMLLTCILWRLTKKHTVSQEDRKSYSWKQRLFIINFISFFSALAVYFRHNMYCEAGVYTIFAILEYTVVLTNMAFHMTAWWDFGNKELLIT----SQPEEKR 253
The following BLAST results are available for this feature:
BLAST of TCONS_00004060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGAP21.272e-2831.35Post-GPI attachment to proteins factor 2 OS=Homo s... [more]
back to top