TCONS_00004409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004409
Unique NameTCONS_00004409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length991

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004409 ID=TCONS_00004409|Name=TCONS_00004409|organism=Clytia hemisphaerica|type=transcript|length=991bp
TAAGCCTCCAAGCTGAACGCACCTAaggaaaaatttcatcaaagaaTATA
ACTAAATTGAAGAAACTATAGACAAAATGTTACGACTTTTATTGATTGTA
CTTTTGACGACCAGCTTTTTTGCGACGATGACTGATGGCCGACCAGCCCC
GTGTACACAGAAACGATGGAAACTATGCAACCCTTCGGAAACAGGCGGAG
AAACTGACCTTGTCAAACAGTTACATAACAGATTGGAAAAAATCTTCAAC
AGTAAAGGAAAAATCAATTCCGGTGACTAAAAAACAAAAGACTGGGACCA
AGAGAAGATTGTGATTGGTGGAGAAAATGCGACATAATGATTGGTCAATA
AAGACTACAAATAAAGTATATACCTTGGTAATGGCAGAGTATATCAAAAC
CTATTTTGACGACCCAGACGACTTTAACCAATTTTGGAAAACGACGagaa
agtccaaaaaccccAAATTTTAAACTACAAACtacaaaaaagcaaaaacc
CTGAAAGATTGACGCATTGGCAATGAAAGGAAAACTGCAAAAGCATTATC
ACGTGCTAAATTAAGTTTTACGTCATCGAAACGTGATAACAAATGAACGT
GAAATCTCAGCCAATCAAATGACACGTAAATACATCGACATAGAAAAACT
TTCTTATTGAACGTGATATTTGACAAACTATgtattggatttttttccaa
tcttgttttttttttttattagctttccttattttccttaaaaaaaatta
gggTGATTAAAGAAGCTATGACGTCTAGCCTATATTATAGACTAGTAAAC
AAACttgaaatattatttatttttttgttaaattattCGATAATAATTTA
TTATGTATTTATTTTACAAACCTTAATTTATTTTCGCccaaagaattttt
aaaattattttttagtcaAAGTCAGATGATAATTTATAAATAAAAGAGAG
AATTTAGAAAgtttattttattgaatttagaaaaataattt
Run BLAST on NCBI

transcript from alignment at sc0000044:366654..367890-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004409 ID=TCONS_00004409|Name=TCONS_00004409|organism=Clytia hemisphaerica|type=transcript|length=1237bp|location=Sequence derived from alignment at sc0000044:366654..367890- (Clytia hemisphaerica)
TAAGCCTCCAAGCTGAACGCACCTAAGGAAAAATTTCATCAAAGAATATA
ACTAAATTGAAGAAACTATAGACAAAATGTTACGACTTTTATTGATTGTA
CTTTTGACGACCAGCTTTTTTGCGACGATGACTGATGGCCGACCAGCCCC
GTGTACACAGAAACGATGGAAACTATGCAACCCTTCGGAAACAGGCGGAG
AAACTGGTAAGTTGGTGTTTTACAATAAGATTTTTAGTCTATAAATTGCG
TTTTTAAGTTGACATCATATTTAAGAAATTTACATTCTTCTGGAATACGT
CGGTTGCAAGTTGCAGTCAATTGAAATATTTTGAAATTTTGAAATTTTGA
GGATTCACTAAACATTTTAAGAGGAAATGTACAGACCTTGAACTGACACC
CACACATCCTGAAATTGCAGTTCATTGACACATTCTTTTCTTCTTTTTCC
AGACCTTGTCAAACAGTTACATAACAGATTGGAAAAAATCTTCAACAGTA
AAGGAAAAATCAATTCCGGTGACTAAAAAACAAAAGACTGGGACCAAGAG
AAGATTGTGATTGGTGGAGAAAATGCGACATAATGATTGGTCAATAAAGA
CTACAAATAAAGTATATACCTTGGTAATGGCAGAGTATATCAAAACCTAT
TTTGACGACCCAGACGACTTTAACCAATTTTGGAAAACGACGAGAAAGTC
CAAAAACCCCAAATTTTAAACTACAAACTACAAAAAAGCAAAAACCCTGA
AAGATTGACGCATTGGCAATGAAAGGAAAACTGCAAAAGCATTATCACGT
GCTAAATTAAGTTTTACGTCATCGAAACGTGATAACAAATGAACGTGAAA
TCTCAGCCAATCAAATGACACGTAAATACATCGACATAGAAAAACTTTCT
TATTGAACGTGATATTTGACAAACTATGTATTGGATTTTTTTCCAATCTT
GTTTTTTTTTTTTATTAGCTTTCCTTATTTTCCTTAAAAAAAATTAGGGT
GATTAAAGAAGCTATGACGTCTAGCCTATATTATAGACTAGTAAACAAAC
TTGAAATATTATTTATTTTTTTGTTAAATTATTCGATAATAATTTATTAT
GTATTTATTTTACAAACCTTAATTTATTTTCGCCCAAAGAATTTTTAAAA
TTATTTTTTAGTCAAAGTCAGATGATAATTTATAAATAAAAGAGAGAATT
TAGAAAGTTTATTTTATTGAATTTAGAAAAATAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002467XLOC_002467Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004409-exon-sc0000044-1575043694:367685..367890TCONS_00004409-exon-sc0000044-1575043694:367685..367890Clytia hemisphaericaexon
TCONS_00004409-exon-sc0000044-1575043694:366654..367438TCONS_00004409-exon-sc0000044-1575043694:366654..367438Clytia hemisphaericaexon
TCONS_00004409-exon-sc0000044-1510915933:367685..367890TCONS_00004409-exon-sc0000044-1510915933:367685..367890Clytia hemisphaericaexon
TCONS_00004409-exon-sc0000044-1510915933:366654..367438TCONS_00004409-exon-sc0000044-1510915933:366654..367438Clytia hemisphaericaexon
TCONS_00004409-exon-sc0000044-1491911889:367685..367890TCONS_00004409-exon-sc0000044-1491911889:367685..367890Clytia hemisphaericaexon
TCONS_00004409-exon-sc0000044-1491911889:366654..367438TCONS_00004409-exon-sc0000044-1491911889:366654..367438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:366654..367890 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0442409	0.0513679	0	0	0	0	0	0	0	0	0.0302148	3.80177	2.72612	0	0.0552919	0	0	9.11493	15.7959	0.0438643	0	0.52018	0.283752	0	0	0.0622085	0	0.251774	0.256518
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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