TCONS_00004553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004553
Unique NameTCONS_00004553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004553 ID=TCONS_00004553|Name=TCONS_00004553|organism=Clytia hemisphaerica|type=transcript|length=1485bp
CGGTCAGTATTTTTACTGAaagtatatttgttttgttctcGGTTGTCCCA
CAAAATTTGCTGCGATATGAACGAAAGATACAGTAAGTAGCCTCATCCGT
CTTAGCAAGTTTACTACCGATACTTAAACCGTTAAAAAGTAGTTTGGTGT
CTCTTGAAGAGAGGCTGCGGTAACTGGttgtatatatatataatatttca
taCTCCAAGTTACTGAGAGTATCAAATTATCAGCTTGATGGCAAATTTTA
TCTTCCCtctttttcagctgttttcttaATCGAAGTCATTCTCAAGAGTA
TAGCATATGGTTTTGTGATGGGTCATAAAAATTGTTACCTGCGAAGTTAT
ATGAACATTATCGATTTCGTTGCCGTGTTTTTCTCGgtgttcaatatttt
tattatgcTGGTCGGGGAGTCGGAACACTTACAATTCAAGACTATCCGTA
TCATTCGTGTTGTACGCATGTTGAAGATCTCCACCGATTTGAAACGTGTT
ATTAACTGTTTGTTGAACAGCTTACAACGGATCACGTATTTCCTGGTGCT
TTACGTTCTCATCCTCTTCATCTACGCCGTCATCGGAGTACATCTTTACC
ATCACGCCTTACATGTTCCATCGCCCATCAATTTGGTCAACGCCTCCAGT
AATACGCCCTACTTGATGAAAGACAGCCACGGGTCCATTAGTTCTTCACC
TGAGATGTCTTGGGAGGGTGTCAAACTCTCCTTCAATAATTTTGGTCACG
GAATGATGACACTGTTTGTTGCCAGTACGTTAGATGATTGGTTTTTGGTG
CTGACACGGCTGACGACGGCTGGACATAGCGAAGTAACCGGCATCGTTTT
CCTACTCTCTTTTCTTATTCTAATGAGCTTCATCTTGATGAATGTGTTCA
TCGGTTTTGTGGTGGTTCTCTTTcacaaagagaaagaaaaagacgAACAA
TACAATGTCTTAAACACGTCTGGTCAAGAATGTTTGGTGACCGCGCTGTC
CGCTAATCCAACGCAATTGTACGATCAACCGCATGGTagatttaaaataa
ttttctggaGGCTTGCATCACATCCATGGTTCCAAAAGCTAAGCATGATT
ATGATTTTAATGAATACAGGCTTCATGATGACCAAACATACACGGCAAGA
TGAAGTATTCTTTCAAATACAGAGGCTAAGTAACATCGTTTTCACTAGCC
TGTTCACCATTGAAATTGCTATCAAATTAACAGCCTTCTCTATGAAAGCC
TTGTTAAGAGATCGCTGGTTGTTGTTCGATGCTATCGTTATTCTTGGGAG
CTGGTTTGATATCGTACTGGAGGAGCTACAAATACCATTCTTAAAGTTAT
CCATATTCCGACTTTTCCGTGTGGCTCGATTAGCACAAGTTTTGGGTAAA
GGAGGCAATTTGAGACAGTTATTTGCGACATTCTTGAAATCAATGAAATG
TGTACCATCCATTGCGTGCTTGATGGGTTTAATCC
Run BLAST on NCBI

transcript from alignment at sc0000045:389249..390971-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004553 ID=TCONS_00004553|Name=TCONS_00004553|organism=Clytia hemisphaerica|type=transcript|length=1723bp|location=Sequence derived from alignment at sc0000045:389249..390971- (Clytia hemisphaerica)
CGGTCAGTATTTTTACTGAAAGTATATTTGTTTTGTTCTCGGTTGTCCCA
CAAAATTTGCTGCGATATGAACGAAAGATACAGTAAGTAGCCTCATCCGT
CTTAGCAAGTTTACTACCGATACTTAAACCGTTAAAAAGTAGTTTGGTGT
CTCTTGAAGAGAGGCTGCGGTAACTGGTTGTATATATATATAATATTTCA
TACTCCAAGTTACTGAGAGTATCAAATTATCAGCTTGATGGCAAATTTTA
TCTTCCCTCTTTTTCAGCTGTTTTCTTAATCGAAGTCATTCTCAAGAGTA
TAGCATATGGTTTTGTGATGGGTCATAAAAATTGTTACCTGCGAAGTTAT
ATGAACATTATCGATTTCGTTGCCGTGTTTTTCTCGGTGTTCAATATTTT
TATTATGCTGGTCGGGGAGTCGGAACACTTACAATTCAAGACTATCCGTA
TCATTCGTGTTGTACGCATGTTGAAGATCTCCACCGATTTGAAACGTGTT
ATTAACTGTTTGTTGAACAGCTTACAACGGATCACGTATTTCCTGGTGCT
TTACGTTCTCATCCTCTTCATCTACGCCGTCATCGGTAAGCATCTATCAA
TATCATGCAATGTTTAAAAAAATATAGGGCAAACCGGAAAATTCACCATG
ACTTCTTGGAAAAATTCACTGTATCTGTTGATAAATCTTAGCCTTTCACT
GTGAATTGTCGAAAGATTTACAGTGAATTCTCTGATCCACTTTTCAGGCA
TCCTGACAACGCCATGTACAACTTTTATTCCACAAAGCTAACGAGTTTTA
TTAAATCTTTATTTCATCCATAGGAGTACATCTTTACCATCACGCCTTAC
ATGTTCCATCGCCCATCAATTTGGTCAACGCCTCCAGTAATACGCCCTAC
TTGATGAAAGACAGCCACGGGTCCATTAGTTCTTCACCTGAGATGTCTTG
GGAGGGTGTCAAACTCTCCTTCAATAATTTTGGTCACGGAATGATGACAC
TGTTTGTTGCCAGTACGTTAGATGATTGGTTTTTGGTGCTGACACGGCTG
ACGACGGCTGGACATAGCGAAGTAACCGGCATCGTTTTCCTACTCTCTTT
TCTTATTCTAATGAGCTTCATCTTGATGAATGTGTTCATCGGTTTTGTGG
TGGTTCTCTTTCACAAAGAGAAAGAAAAAGACGAACAATACAATGTCTTA
AACACGTCTGGTCAAGAATGTTTGGTGACCGCGCTGTCCGCTAATCCAAC
GCAATTGTACGATCAACCGCATGGTAGATTTAAAATAATTTTCTGGAGGC
TTGCATCACATCCATGGTTCCAAAAGCTAAGCATGATTATGATTTTAATG
AATACAGGCTTCATGATGACCAAACATACACGGCAAGATGAAGTATTCTT
TCAAATACAGAGGCTAAGTAACATCGTTTTCACTAGCCTGTTCACCATTG
AAATTGCTATCAAATTAACAGCCTTCTCTATGAAAGCCTTGTTAAGAGAT
CGCTGGTTGTTGTTCGATGCTATCGTTATTCTTGGGAGCTGGTTTGATAT
CGTACTGGAGGAGCTACAAATACCATTCTTAAAGTTATCCATATTCCGAC
TTTTCCGTGTGGCTCGATTAGCACAAGTTTTGGGTAAAGGAGGCAATTTG
AGACAGTTATTTGCGACATTCTTGAAATCAATGAAATGTGTACCATCCAT
TGCGTGCTTGATGGGTTTAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002560XLOC_002560Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004553-exon-sc0000045-1575043694:390387..390971TCONS_00004553-exon-sc0000045-1575043694:390387..390971Clytia hemisphaericaexon
TCONS_00004553-exon-sc0000045-1575043694:389249..390148TCONS_00004553-exon-sc0000045-1575043694:389249..390148Clytia hemisphaericaexon
TCONS_00004553-exon-sc0000045-1510915933:390387..390971TCONS_00004553-exon-sc0000045-1510915933:390387..390971Clytia hemisphaericaexon
TCONS_00004553-exon-sc0000045-1510915933:389249..390148TCONS_00004553-exon-sc0000045-1510915933:389249..390148Clytia hemisphaericaexon
TCONS_00004553-exon-sc0000045-1491911889:390387..390971TCONS_00004553-exon-sc0000045-1491911889:390387..390971Clytia hemisphaericaexon
TCONS_00004553-exon-sc0000045-1491911889:389249..390148TCONS_00004553-exon-sc0000045-1491911889:389249..390148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:389249..390971 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.048596	0.0775111	0.438465	0.611986	0	0	0	0.000869768	0	0	0	0	0	0.00597975	0.0142288	0	0	0	0	0	0.0352532	0	0	0.0061626	0	0.268102	0	0.0813753	0	0
Blast
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BLAST of TCONS_00004553 vs. Swiss-Prot (Human)
Match: CAC1D (Voltage-dependent L-type calcium channel subunit alpha-1D OS=Homo sapiens GN=CACNA1D PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 2.471e-48
Identity = 119/443 (26.86%), Postives = 228/443 (51.47%), Query Frame = 3 
Query:  258 SFSAVFLIEVILKSIAYGFVMGHKNCYLRSYMNIIDFVAVFFSVFNIFIMLVGESEHLQFKTIRIIRVVRMLKISTDLKRVINCLLNSLQRITYFLVLYVLILFIYAVIGVHLYHHALHVPSPINLVNASSNTPY-------LMKDSHGSISSSPEMSWEGVKLSFNNFGHGMMTLFVASTLDDWFLVLTRLTTAGHSEVTGI--------VXXXXXXXXXXXXXXNVFIGFVVVLFHKEKEKDEQYNVLNTSGQECLVTALSANPTQLYDQPHGRFKIIFWRLASHPWFQKLSMIMILMNTGFMMTKHTRQDEVFFQIQRLSNIVFTSLFTIEIAIKLTAFSMKALLRDRWLLFDAIVILGSWFDIVLEELQ------IPF-------------LKLSIFRLFRVARLAQVLGKGGNLRQLFATFLKSMKCVPSIACLMGLI 1484
            +F+A+F +E++LK   +G  + HK  + R+Y N++D + V  S+ +  I     S     + +R++R +R +  +  LK V+ C+  +++ I   +++  L+ F++A IGV L+    +        + + + P        L KD         E  W+    +F+N    MM LF  ST + W  +L +   +    +  I        +F + ++I+++F +MN+F+GFV+V F ++ EK+ +   L+ + ++C+  AL A P + Y  P   ++  FW + +   F+ +  ++I++NT  +  +H  Q ++F     + N+VFT +FT+E+ +K+ AF  K    D W  FD+++++GS  D+ L E        +P              + ++ FRLFRV RL ++L +G  +R L  TF+KS + +P +A L+ ++
Sbjct:  925 AFTAIFTVEILLKMTTFGAFL-HKGAFCRNYFNLLDMLVVGVSLVSFGIQSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFY-----RCTDEAKSNPEECRGLFILYKDGDVDSPVVRERIWQNSDFNFDNVLSAMMALFTVSTFEGWPALLYKAIDSNGENIGPIYNHRVEISIFFIIYIIIVAFFMMNIFVGFVIVTFQEQGEKEYKNCELDKNQRQCVEYALKARPLRRY-IPKNPYQYKFWYVVNSSPFEYMMFVLIMLNTLCLAMQHYEQSKMFNDAMDILNMVFTGVFTVEMVLKVIAFKPKGYFSDAWNTFDSLIVIGSIIDVALSEADPTESENVPVPTATPGNSEESNRISITFFRLFRVMRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLIAML 1360
The following BLAST results are available for this feature:
BLAST of TCONS_00004553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAC1D2.471e-4826.86Voltage-dependent L-type calcium channel subunit a... [more]
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