TCONS_00046155 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00046155
Unique Name	TCONS_00046155
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1232

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_106:43735..59372-
coding sequence from alignment at scaffold_106:43735..59372-

transcript sequence

>TCONS_00046155 ID=TCONS_00046155|Name=TCONS_00046155|organism=Clytia hemisphaerica|type=transcript|length=1232bp
CAAATATTCCAGATTTAAGTAGTATTCCCAAAAATCACTTAAAGTATGAT
CAGAGAACCAGTAATTCGCCTAAAATTTAAACTAAATGgtcaattttgtg
aaaaatagtCAAATTGGTAAAATCTAGATCTTCATCCAGCATGCATTTCG
GACACGAAAGTTACGGAACCGACAATTTAAAGTCCATGAGCGAGAAACAA
CAACAAGTCAACAGCCAAGCGGGTGCAAGTGAGCAGAACACAAAATATCG
ACGCTGGTCGCCTAAGATTACACAATATAACTAAAAACATGGCTCTTAGA
ATACTTGGCTCCACACTCAGGCAGGGTAAAACAATTGCCAAAGTTGCAAG
GCTGTCCACATCTGCTGCTGCTCGAAAAGCTGTTCTCTCCGAAACAATCC
CGACTGATCTCGAACAAGCCACTGGTGTGGAACGAAAAGAATTAGAAGCG
ATTTTGGGAGGAAACCCAGATCCTTTTAACATGAACATTACGAAGGGAGC
ACCTGGAACACGTGACGCACCCACATTGGTTCCGTCTATGTACGAAGAAA
GAATTATCGGCTGCGTTTGCGAAGAAGAAGCGACGACAATCGTTTGGATG
GTACTCAAGAAAGGAGGTGCTCAACGTTGTAAATGTGGGAACTTCTTTCA
ATTAGTACCAGGAAAAGCTAATGCATTGGCTGACTAATAAAATCATTAAT
CAAATCAATGAACTACACCAAAATTATCTCACGTATACTGGCTGTCAATA
CCAACAAACCTGTACTTGCAATAATGAACTTGTTTATAAAATATACAAAC
CTAAAAAAATTCGAAAATTACACGTGCACAGAATTTCGTGAACTTTTTCC
TTCTTTAAAATTTTTTTGAATATTGTTGATTTTTTTTTTATGTTTCCCGT
TATATTTGAATTGGCTAAAAAAATGGTGGTTTTAAATATTTTTTTATTAG
CATGAACTTTTTAAAAGGAGGCTCTGAATGCAACTAGCTGAATACGAGTG
GCGATCGAAATGTTTTTAATATTTTGTGGATGTGTAGTTTGATTTTAAAA
AATAATAAAAAACCGAAAAAACTATTTGGTGCTTATTTACTTTCTGTTAA
AAAGGtttgattttgaaagttctttcaatcaaaagtttCGAACCTGTGTA
ATTGATATGGAAGCTTTTAAGTTCTAAACTATCTATATATTCGAAGTCCA
GCTTTTGAACAtgatttgaaaaagattttctg

Run BLAST on NCBI

protein sequence of TCONS_00046155-protein

>TCONS_00046155-protein ID=TCONS_00046155-protein|Name=TCONS_00046155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MALRILGSTLRQGKTIAKVARLSTSAAARKAVLSETIPTDLEQATGVERK
ELEAILGGNPDPFNMNITKGAPGTRDAPTLVPSMYEERIIGCVCEEEATT
IVWMVLKKGGAQRCKCGNFFQLVPGKANALAD

Run BLAST on NCBI

transcript from alignment at scaffold_106:43735..59372-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00046155 ID=TCONS_00046155|Name=TCONS_00046155|organism=Clytia hemisphaerica|type=transcript|length=15638bp|location=Sequence derived from alignment at scaffold_106:43735..59372- (Clytia hemisphaerica)
CAAATATTCCAGATTTAAGTAGTATTCCCAAAAATCACTTAAAGTATGAT
CAGAGAACCAGTAATTCGCCTAAAATTTAAACTAAATGGTCAATTTTGTG
AAAAATAGTCAAATTGGTAAAATCTAGATCTTCATCCAGCATGCATTTCG
GACACGAAAGTTACGGAACCGACAATTTAAAGTCCATGAGCGAGAAACAA
CAACAAGTCAACAGCCAAGCGGGTGCAAGTGAGCAGAACACAAAATATCG
ACGCTGGTCGCCTAAGATTACACAATATAACTAAAAACATGGCTCTTAGA
ATACTTGGCTCCACACTCAGGCAGGGTAAAACAATTGCCAAAGTTGCAAG
GCTGTCCACATCTGCTGCTGCTCGAAAAGCTGTTCTCTCCGGTAGGTTAT
TTTAGTTCCTTTATTTAGCTAGTTTCTTTGTCACATGCATCATCATTTTT
CTTCTTTGACCCCATTTCAAAGAGCCGAAAGGGTGGGAGTAAGTCTTAAA
TTGTTTTTTTTTTTTATTTGGTTAGGCTACCTTTCCTTTATTTTAACAAA
ATAAATCTTTTCCAAATCCGGCAGGTCCAAAATGCATAAAACATAATGCA
TATTGCATAATGCATAATCCAGGCGTAGTTAATCGATTGCCCTTTATTTA
GAGAAGGGGCGTTATTGAATGGTTTGCCTTTTTGGAGGACATTATTAATT
CCAAAGCGTGTGTTTATTCAAAGTAAGAGCATGAGTCTGCTAATGTCACC
CATTTTCGGTTTTGTCAACTTTTAAACTTTAAGGCTCCATTGAAAAATCT
AGGTGCATGCAATAATGATACCAGCTGATGTTTTTTATCAGTCTTGATAC
TGGCAAGCTTAAACAGTCATTTTTTTCACTTTACAAAGTACACAATTTTT
TCAGGACAGCTTTTTACATCAAAATGTGAACAGAAAATGAGGTTTTTAGC
AAACTGTCTAAGTTCATTATTTAATAATCTAGGCCAATCATGTCTGATCA
TACTTAATTTTTCTTTTTATTACAGCCAAGGGATATGAAAAACTAAATCT
ACAAAAAGATTTTTCAAAATGAAGTTTTTCCCAGAATAAATGCAAAAAGT
TGCGGACATAACTTTTTCCGTTCACAAAGTTATGTCCGCACACAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGAAAAAGACA
CTCCAAAATCTTTAATTAATGATGTATAATGTTCTATGGTTCTACCCTAA
GAAGAAAAAGTTATGTCCGCAACACAGCATTATTATATATTTAACCCTTT
CTATTGAAAAAGTTTAGTGACTCTCAAGGAAAAATCATATTTAATGATTA
TGAGAATGTACAACAGTTGATGTCAAGCTCAAATCTTAACTTTTAAGATT
GGATTTTAACAAAAAATTATATATGATTGGATTCTCTTTTACAAATAAAT
CTTCAATTTTCAGGAAATCATAGTTACAACAGGTTACAAAGACCTTTCAA
GACAACAAGTTTCAATGATTAAGTTTTGGTTCAAGTACAGCAAAGTATTA
AAAGCCAAATAATAACTCAATTTAATGTTTATTGCTGATTTTAAATCAAA
TTTAACAAAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAATAAAAGTGAAATTCAA
AACTTTATTTTTTCCAAATTTTTTCACCTATTTGGGTGACATTACCAGAC
TCATGCTCGTAATACGATCGGTATGAGATTTGGCGAATTCCAGAAATTTT
CTTTACTTCATTCATTAAATACCTTATCTTGGCCCTTTTTACGCCGGCCC
TTATTAGCATTATTTTTGGGCTTGTTGGTGGAATAAGGGCTGGCGTAAAA
AGGGTCGGTAATAGACCTTTTCGCCTTTCCATTCGCCATCTTGAATTGTA
TGCAAAAATAGAGGATCGAAAAAGCCGTGGTTGGATTTAGTTGGAAAATA
TGCAAAACCTATGCAAGTTTACACAAAGATTAAAAAGACAACAAAGCATC
TAATATTATAATCATTAGAACAATAAAAGATGGAATTTCTTAATCCGAAA
AGAAATATTTACAGAACAGCAATAACCTTTTAGAAATTTGTTCTTAAAGA
CATTGCATATTCTGTTTTCATGCCATTAAAAAATTCCACCAAGACGGAGT
ACACACATCAAACTTTCAAAACACGCAAATTGAAAGCAGTAATTATGATG
TCACACATTCAGCGGGTTCAGATCAATGACCTTTATATATCCCTGGACCA
AGTTACTCAATCCCGGCCAAGCAAAATCTTTGATCGGAGTTTTTTTTAAA
TTGGTACCCTAATGGCGGCACTACTCACAATAGCGGTGAAAATGCATCGA
GAGCGCTAGATTTACTTTTCCTCAAATACTTTTGATGATGTAGCATCGTT
AGACGTTAATTTTTAACATTGCAATGGCTTCTTCTCGGGTACCAATTCCA
AAAAAACTCCGATCAAAGATGGCGAATATAGCTTGGTCCAGGGATATATA
AAGGTCAGTGGTTCAGATCAATGTTTTGATTTGATCGTCTGATGGTTATA
TTCCCAAGAGAATTTACCGTCAGCCGAATAAGGATTATTTTTGTACCTTC
GCGGGTGATTTTTCAGCTTGAGTTTATGTCTAATGTTATGGTTTTTTGAA
GTGCTTGTTCTATTAGACAGGCAGCTGACGACATCAAAAAAAGTGAATAA
GTGAAAATTCGAGGGACAAATATTGAGTACTTATTTTGAAATCTTTATAG
TTTAGAGAGTCAGAAAAATTTACTCGGCGTGTTCAAAAATCTTTACCGGA
CATGTCCGAGATTAATTTATGAATTGATGACGTCATAAGCAAAAGTGAAA
AATTGATGTTGCAAAAATTCAAAGTTTTATATACCATTGGAAGCGTTTTT
TGATGTAGATTTCAAATCACATCAATCTCAGTAAGTAAAAATGAAAAGTT
ATTAAGGTCTGTAGCTTTTCTATGACGTCATTTTTGAAAAAATGCCTCAT
TTTATAAGGAATTACGATCTCAATTTTCTCGAGTTAGGCTGAGAAATCGA
ATATACCCGTTTAATTGTCTTCTATATAGTTTTTGATGAGCTTTCGAATG
GTGTAAATTGTTTTTTGATTTGATGACGTTGAAATTTGACATTTTTTGGG
GGTGACATGGTCATGATTGACCAAAATCACATGTCAAATTTAAGTCATAA
CTTTTGAAATCTAAATTTTTACCTATTGAGACTGATGTGATTTAGAATCT
AGATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAGAAACTAGATCGAAAAATGCGTTGAATGGTA
TATATTTCATTATTATATGCTGAAATCAAATTTTCACTTTTGGTGGTGAC
GTCATCATTTGACAAATTACCACCGGACATGTCCGTTAAATAAATTTTCG
GACGCCGAGTAAAATTTTTAGGATCAGTAGATATATGGAAACAAGAAAAA
TCAACTCGACGTTTGTCCCAAAGTCATCCAGATTTTAGATATCGTCAGCT
GCCTGTCTATATGAGATGATTGAATTTAATCATTTCTAGTTTTCAAAAGA
AGCAAATTTAATCTTTCTTCTACAAGATTACACTTTAATATAATGCCAAT
TATGCATGTAAGTTTTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TGCATACTTTCTAAGGGAATTTCACCACGGCAATTCGGCCACCATAATTT
TTGCATACAATTCAATATGGCAGATGGAAAGGCGAAAAGGTCTATGTAGT
CAATAGTCGGTGGTCACGATCGATATATAATTGATAACGATACGTGATTG
AAGATAAGTAAATAATTGATAAGTAATCAATGCATGAACGATAAGTAATC
GATGATTGTTAACAATCAATACATGATTGATAAGTAATCAATAGGTTGGA
AATAATCGATCGCTGATCGATACTCAAGATTTTTTGAAGGTCTGATTACC
TATCTACTTATTTATTTATCGATTACTCAAGATTATCGATCATATCGATT
AACTACGCCTGGCATAATGCATAATATTTGAAAATTGTCAATTTTAGAGG
CTATAATAAGGAGAATTTGAAAGATAATACTTTCAAAAAAACAAATGTAC
CAGAAAATAGGGTAGAAAGCTGTAAATTTCAATTTTGGATGATGAAGAAA
ATGCTTGTCGCCATTTTTATTTTTCATAGTTGTATTTTACAGAAAGTAGT
ATAGTGTAGAAAAAACACAAAAAATCTCCTCTGTATATTACTTTTCTAAC
TCAAAAACGTAAATTTTATAGCACGATCTTTATTCTGGGTTTTCTCAGAG
ATCTTTTCGAACAATTGCTAATAAATTTCAATGGGTTTTCCTTCTTACAA
AGCATTAACCATGTGAATGCTTTTTGTTAGATAAGCCAATATCCAGCAGT
TAGTTACACTAGCGTCCCGCCGAAATGTGTATCAAAGATTAATGCTGCGA
AAGCGCTATATCGTTTACTTGACTCGCAAGCAAACAAATGTGCTGCAAAA
CTTCTTGAGGGATTCATGAAAAAATAACCCGGCGCTTTTTAATGAAATTA
ATATTTTCAAAACTATGAGAATGACAAAATTTGGTTGGTTGATATTCTGG
CTGTTGCACGTTCGCAATCGGTCACTTAGTCTCATTTTAAGTTTTCAAGT
TTTAATTAATTGTCTTGAACTTGAACTTGATTCAGGTAACTCTCATCCTT
GTTGTTCAATTACATCCTGTAGATGACTGATGTTGATTTTTCTGAAAGCT
TGATTTCCTAGTGTGACTAACTGTCCAGCCAATATAAATTAAAGAGCTTC
GTGCAAAAGCTAGATCAAAGAAAATCAGAATATAGAATCTTTTTACATTC
AAATGTTTATGTGTTTACCTTTTTTTTGAGAAAGAAGAATGGGAAAACCT
TCCTGATCTGTTGCATCTTCTTATTATTTATGCTGACGGAAAACCCTTTG
ATGTTATAATTCTAATGTTTTCTCTTTCGTTCAGATTCGAAAAGTAAATA
TCATGTCTGGGAAAATCCCTCCAGAATCCCTCTAATTGGAATGTTTTCTT
AATAAAGAGGTTTTTGCGGTTTTAGCCTCTACAAAGGAGAGTTTTAGAAA
ATATAAATTTGTTCTGTAAATTACACGATACTATTATGCATTATGCAATA
TGCATTATGTTTTGTACCTGCCGTTTCCAAATCACATTGACAGTGAAAAA
CTTGAAAAACTCAGCATCCAAAAAATTTTGGGTCCCAAAAATCCATAATA
GTAGCTTTAGGGCTTGTAAAATTTTTGTTAGGGGAGGTTTATCTAGTGAT
CCTCAGGAAATTATGAAATTGTCGAGTGCAGACGTCGAAAAAAAAATCCA
AAATGGCTGCCGAGTGAACACTGACAAAAACTAAAGATCAAGAGTTTTCA
ATCGCCTACTNTCCATAATGGCTGCCGAGCGAACACTGACAAAAACTAAA
GATCAAGAGTTTTCAATCGCCTACTAGAGTAGAGTCCCCTGCGCAGTTGG
CGACCGGTCTAGTTGGTGACCGAACGCCATTGAACCCAGAAAAGTCATAC
AATAACAAACCTCTGGAGAATTTCTTTTGGTAGTTATCTGCCTTGACCTA
TTAGTCGCGCGGCTGAGGTCGAAAAACGTTTCATTTCGTGATACATCTTT
TAGATTCCAAAAAAAACAACGGAAACTCGCAAATTAGTATGTGTAGATTA
CAAAATCAAAAAGTTTCCACGATATTATCGTGCAAGTAACGAGTAATTGG
CGATTTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTACACCAAAGTCCCAACTTCTCTAGATCAAAATTTATTGGCCTAT
TTGTGGTAAAAAACTGATGGAAAACAGGGAATTTCCCCACAATCTGAATT
AATTTAAGCAAAATTAAACACCTTTTTGACCACAAATAGGCCCATAACTT
TTGATCTAGAGAAGTTGGGACCTTGGTGTAATACACTTTTTTGCTCAGTT
TGAAGAGCACTATCATGTGATATAGGTCTTTTTTTAATTTGAAGACCCTC
CAAAAATCATGAATTTCCAGGCCTTGCAATTTTGCCTGGAAACGCAAAAA
ATCGCCAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNATTTTCTAGCCACTTTTTTCGACCTCAGCCGCGCGACTATATT
TCCCGTACTGTGTAATAATAATTCTAGAAAAGAACGAGTAGAATCCGAAA
GACAGTTGGGTGTTTAAGATAAAAACAGTAATTATTTTTCTTTTCGGCAA
TTATTGCCGAAAACGGCAATTTTTTTCAGCGATGAAATGCTGAATCAGCA
GAAAAGAAAAAAAAATGAAAATTGCCTTTTTCAGCAAATTGTTGCCGAAA
TTCTGGAAAGAAAAGCTTATTTTATTATTGAACACATGGTATTTGACACC
CTCGCGATAAGTAGGCCCACTGTGCCTCGTTTGGTTTTGTTTTCAACTGG
TTTTTGTTGGAAATGCAGTTAGCAAAACAAGTCACATGTAAACAAACTTA
CAATGTGGGTTTTATTATCTCTTCCAGGCTGTGTTTCGGCACCGATGCAG
GATCTTTTTACATATTATTTTAGAACTTTTCATGTTATTGAGCAAAGAAA
AATCGAAAAAAATCACTTTTAAAAATCCAAAAAACCTTTTTCTCAATGCA
AATTTACAAGTTTCAACACCTCTGACATCTTTGCCCTTATAAGGACAACA
TATTTTGCTCATTCAGCATTTCATCATTGAACAAATTGCCGTTTTCGGAA
ATAATTGCCGTTTTTATCTTAAACACCCAACTGAAAGTTCCAACTTTGCA
CGGAAGGAAGCAGACGAAAAAACCGGATTTTTCGAAAAAAATAAAAAATG
GCTACCTGTGGACAAAAAAGTTTTGTAAGAAAAAACGCTTCAACTGCCAC
TTCAAAAAATACTTGTCCAAAACGATGAGCATGTTAGAAAGCATTTCTAT
AAAAATCAGCTCAATACAGTTTTCTTCGTCTGAAATATTGATAAAAAAGT
TGATGCAATCAGTTTCAAAATTAGACATCCAGTCTGCGACCAACGAAATC
GAAAGCAAGAAAAAGAAGACTCTACATTGCGATNAAGTCTGCGACCAACA
AAATCGAAAGCAAGAAAAAGAAGACTCTACATTGCGATCAAAACATTCCA
GACGCGGAGAAAAAAAAGAAGACTTTACATTGCGATCAAAACATTCAAGG
GGTATGTCCGCAGTCTTGACAGCTCCAATGTGAAGTTTCTAGCTCCGGAT
TGAAATAACATATATTAACGTAAGGTATATTGAATCTCCGGGTAGACATA
AAAAATTCCCGCATTTTTATCAAATGAAGACTCTCCATAGACCGCCACTT
TCAAAACAAAACAAAAACAAACGTTAGAAAAAATGGCGACTTGAAGAAAA
ACTCTGAAAAAACATGCCGAAGTGAAATGTATGTGAGCTATTTTAAAACA
AAAGTGCAAAGAAATTTAATACAGGAAAGGTTATGAGTTTTTTGTCATAC
TGATCAATTCATATGACCTAACCTGCAAGTAGAGCACTGATTTTCTCTTT
TTAGCGATCGGTTGCAGACTGGTACATCGGTCGGGAACTGGGCACTGGTA
CCGCTCGCCTCGAAAGTTTTTTATTCTAAGAATCTGATCGCCTCAAATAA
AAAATCAAAACAAACACGAAGATCATGTTAAAAGTTGTCTAACTGTTGGT
TGAAAAGGATTTTCAAAAAAGTAAAAAGTAAGTGAAAAATTTGAATCAAA
AAATTTTGGTCGCCAATTGGGCAGAATGAGACAGAGAATTGCTGTAAAAT
AAAAAGTAAACAAACCTTGAACCTTTTGTCTGTCAAAATAAAAGGGAGTT
TACCAACAATTTTTCTAAAATATACGGCAAATTTCCACAGATTTTTTTTT
TTCATACCCTTTATTAAGAGGCTGTCTTCTTATAAATTTGAATTATAGAA
AGATTCAAATAATTACTGTGTTTTATTGTGTGTTTTTTCATACACTCCAC
CATAGCGAAGGCGCGAACAGCATTTCACAATTATAAGAATATCTTATGTG
CTTAATTCTATTTGACTTTGAGATCTTCATTGAAGATGAAAAAGTAGAAA
GATAAAAAATGCACTGGTTAATTTTGTTTAAATAAGGTGTGTTCTGTCAT
TGCTGAAAGTTGGAGAAAATTCTATCGAGGCAGGAAATTTTTTACAGCCA
ATTAAAGGCACATTTTGCTTATACTTACTATGTTTGCTATATCGTTTAGG
CAAAAAATGGTAAATAAAGACGCAAACGTAATTTTTTTAAGAGTGCGGTT
ATGATTTTTTTGACTGTGGCCACATACAGCTGTATATGTACCACAAAACC
CACAGGTACCTCAAAACCACAATTTCATTTCAGGAGTTCTAGAAAAATCT
AAAATGTTTTTATTAGCATAACTTTTTAAGATTATGTTGGCATATGGTTT
CTTCATTATTTAAAACAAAATTGAGCATTATTGGTTGGGTAAAAGTTTTT
TATCAAGATATAACGCTAGAAATCTAACTTCAAAATTTTTGATGTTTTTC
AAAAAATGGTCAGATAATTCACTTGCTATTGACTAACCTATCAATCTTTC
GTTTTCTATTTCCTCTAGGCATAAAACAAACATAGGAAAAAAGTCCTAAG
TGCTGTAAGCAATGTGTTTATTTTAGTTGCTCTCAAAAAATTCACTTGTC
AAATGTTCCTTACTGTAAGATGTTATTGAGACATACAAGTGTCTAAGATG
TTACAAGAAAATCTATGAAAACGTTAGATTATACCGGGTGTGCCACAAAT
AAGTTACCCTCTTTGATTTGATATTGCAGGCAGTAGCAGAAAGATTTTTC
AAAGATTGTTTCGGAATCATTCAGAGGAAAGCCTAACTTAAAATTTGGTT
TATTACTTTTTGATTTTACTTCATTGGCTCAAAGGTTATGTTCAAAAACC
TAAAATGTCAATTCAAAAAAATGTCAAAAAAAGGCTAAAACAAGGGTATC
AATTTATGAGAGAAAGGACTTCTTTCACCAAAACATTAAAGTACAAAGTC
TTGCTCCTTGTAACACTCTTTATGTTTTCTTTATATCTATTTTTTTTTAT
CGTTGACTTCTGTTTTCCCCTTGGGCATAAACAAGATGCAGAAGGCTTCA
ACCACCACAAAAGTTTCAGCATCTTTCCAAGAGTTTCTGAAAGTTTTCTG
TGTGTGCATCATCATTGAGAAAGGTGAAGAAAGAGAAAGTTTTGAGAAAA
ATGTCGCGTTTGAACTGTTGCAGCTCATTTTGATTCACCCTGTATTTACA
GGGATGCTTAACATTAACCTTGTAGTTGTAAATAAGTGTTTTTTACATAA
TGGAAATACATCTCCCTGCAATTCCTGATGCATAAAATCATTTTGTGTCT
CTATTCATTACAATCAATTTAATACTCTAGTTTTCACCTTTTTTGACATT
TTTTAGAATTGACATTTTAGGTTTTTGAACATAACTTTTGAACCAATGAA
GTAAACTCAAAAAGTAATAAACCAAATTTTAAGTTAGGCTTTCCCTCTGA
ATGATTCCGAAACAATCTTTGAAAAATCTCTTTTCTACTGCCTGCAATAT
CAAATCAAAGACGGTAACTTATTTGTGGCACACCCGGTATATTCAGAATT
TTTAGTCCAAGAAAAGTTGCAAACAAGACATAAGGTTTCTCAAAGCTTGT
AATAATAACACCAAAAAAACAAAGGCTCTTGTCTTTAAAATTATACAAAA
CTAAAGGAAAGAAAAGAATTTCTTATAAATATCTTTGACAGGATTTGATA
AAAAAGGTAACCTCGAAACGATGCTTTCTTGGACAACCTACCACATAAAC
CGTACCTTAAGGGAAGAAATTTTCGCGAGAAGAAATTTTCGCGGAATTTA
ATTTCGCGAATCAGAGTTTCAAAATGGCAAATTTCGCAGAATTTAATTTC
GCGAATGAGCTGATTTCAAAAGTTTCACGGAATTTAATTTCGCGATTAAG
AAGAAGTTATCAACTTAGATTAACTTTTAAGCATCACGGTGTTGTTTATA
TTTGTTTATATTTGATAAAAATAGACATTATAATGCTTAAAAAAAATCAA
TTGTGTCCATCTTTTTTTGGTAATACCTGGTCAAAAACAACAAAATAAAA
GAAGAAGAAAAAAAATCGAATTTCGCGAAATTTAATTTCGCGATTTAACA
ATTTTGGTGTGTTTCGCGGAATTTAATTTCGCGAATTACGCCCAAATTCG
CGAAATTAAATNTGTGTTTCGCGGAATTTAAATTCGCGAATTACGCCAAG
ATAACACCACACAACAATCAGCAATGATGCCGTCATTAAAACATTCAAAA
CATACTCCAAGTCAAATTGCTATATACTGTATGTTCATCAAATGCAAATT
CAAAGTATCTTTAGTCAGGGAGACAATCACACAAGTTTCAAAAAGGTTTA
GAAAATCCACTCTGACCTCATGAATGCACAAACCAAACATTAAAAGACTG
TAAAGCTTTTTAGGGTCACTGGCTAAACAATTCCATATTACATGTTCCAG
AGGTGTTAGACAGGAATACCCGTGAAGTCAAAGCTGTGAGTCCATTTGCA
GACTCAAAAACAAAATAGCCTATTTTCTCGCTGGACTCACTTCCTGAAAA
AAATTTTATAAATTTTGTTCCAAAAGTGAGTGTGACCACCGGTAAAAAAA
GTGTTTTGATTGGTAGATTCTAATCAGCCGTTTTTTTGGTGGGAAATTTG
AAACTTTCAAATTATCAGCCCTGACCATGCTATTCATTTTGCCATCAGTA
ATAAAATAAGTTGGTCAGAGTTGGAGCTTAAAAACAAGCCCTTGTCTCCA
ATCTTACCTATGAGCTCTGATTCTTAGTTTGTTTAAACAATATAGATAGG
AGTTAGAAACTGGGATCTGGCATGATTGTCATGTAATTTCCACATTGGTT
GAAAGAAATTGAGGACGTCTTTTCCGAAATTATGTCTTTTTCTTTCTAAT
CTTAATTCAAAATTGTTGTTAAAGCTGGCTAAAGTTGAAAACCTGTGAAA
ATTATTCAAAAATTGCCTCAAGAATCGCACATTTACACCTATATTTTTTA
TTCTTGCGCTCTTCAATTTAGTCACTTTATCTGATTCGACAGTTTTATTT
TTGGCAGAGGTCGCTACTAAGCTGTAGGGACCAGTGCCAGGTGGATGGTA
AGAAATAGCATTTGAAAAATAACTTTGTACCATGGTACTAGGTGTTGGTT
TCCATCTTTTCAACGAGGACAAAACTGCTGTTTAGCTCGCATTCTAGTCA
CAGTCTTTGTTTCAATTTAAGTTGAAAATTCCAATTCTACATTGAATTCT
CGCTAATTCGAACTTTCAAATCATTCAAATCTTTCTTGTTTTCAGAAACA
ATCCCGACTGATCTCGAACAAGCCACTGGTGTGGAACGAAAAGAATTAGA
AGCGATTTTGGGAGGAAACCCAGTAAGTATCAGATTCGATTCTATTTTCC
TGTTGGTAACATAAATACGTAGTTATCAGGGTGGTTGATTGGTAGAGGAA
ACAAGAATATGTAGCCTCATTTGATTTGCCATTTTGCTGTGTGTTTTGTC
CTTTGAAAAAAATGAGTTTAGCCTGATCTGCGTTCTGGTTTATTTGGGGA
GTTTATTTCAAAATCTACTCGCTGACAGCTAGGCCTTAACCAATTAACAT
TCATAATATTTAATGATAAAGAAATGTCAGGCCATTACTAATTTCCGAGC
AGATTTTGATACTCAGTGCATGGCACGTCTTCACTTTAAATGCCATGACT
CCCAAAGAGAATCTGCCTATTTTTATCCAGATTTGGGATGAATATTAAAT
GAGTTTTTGAGCTTGGTGATTGGTTAGAGTATAACAATCGCATTAATATC
AAACGTATGCGCAGAATGTCATTACTGAAGTTTATATTTCCTTTCTCTCT
TAGGATCCTTTTAACATGAACATTACGAAGGGAGCACCTGGAACACGTGA
CGCACCCACATTGGTTCCGTCTATGTACGAAGAAAGAATTATCGGCTGCG
TTTGTAAGTTCTTAAAAGTTCTTTTAAGTCTTCTCAAAATNCATGTACGA
AGAAAGAATTATCGGCTGTGTTTGTAAGTTCTTAAAAGTTCTTTTAAGTC
TTCTCAAAATTAGGTGACCGCTTCATTTGTTTTCACTTTCGCAGCACCTT
TTTATGCTGAATTAAAAAAAAATTCAGAAATCTTCAATCTTTTCGATTAT
TCTTCCCGAAAATATAAACGAGGTATATGTATAACATAAACAGGTGCTCG
GAAAACATTTTACAAGATCCGAGAAAATAAGATCACGATTTTCCTTTGAC
CTTCCTCTCATGTTTTCCTTTCAGGCGAAGAAGAAGCGACGACAATCGTT
TGGATGGTACTCAAGAAAGGAGGTGCTCAACGTTGTAAATGTGGGAACTT
CTTTCAATTAGTACCAGGAAAAGCTAATGCATTGGCTGACTAATAAAATC
ATTAATCAAATCAATGAACTACACCAAAATTATCTCACGTATACTGGCTG
TCAATACCAACAAACCTGTACTTGCAATAATGAACTTGTTTATAAAATAT
ACAAACCTAAAAAAATTCGAAAATTACACGTGCACAGAATTTCGTGAACT
TTTTCCTTCTTTAAAATTTTTTTGAATATTGTTGATTTTTTTTTTATGTT
TCCCGTTATATTTGAATTGGCTAAAAAAATGGTGGTTTTAAATATTTTTT
TATTAGCATGAACTTTTTAAAAGGAGGCTCTGAATGCAACTAGCTGAATA
CGAGTGGCGATCGAAATGTTTTTAATATTTTGTGGATGTGTAGTTTGATT
TTAAAAAATAATAAAAAACCGAAAAAACTATTTGGTGCTTATTTACTTTC
TGTTAAAAAGGTTTGATTTTGAAAGTTCTTTCAATCAAAAGTTTCGAACC
TGTGTAATTGATATGGAAGCTTTTAAGTTCTAAACTATCTATATATTCGA
AGTCCAGCTTTTGAACATGATTTGAAAAAGATTTTCTG

Coding sequence (CDS) from alignment at scaffold_106:43735..59372-

>TCONS_00046155 ID=TCONS_00046155|Name=TCONS_00046155|organism=Clytia hemisphaerica|type=CDS|length=1596bp|location=Sequence derived from alignment at scaffold_106:43735..59372- (Clytia hemisphaerica)
GCGAAGAAGAAGCGACGACAATCGTTTGGATGGTACTCAAGAAAGGAGGT
GCTCAACGTTGTAAATGTGGGAACTTCTTTCAATTAGTACCAGGAAAAGC
TAATGCATTGGCTGACTAAGATCCTTTTAACATGAACATTACGAAGGGAG
CACCTGGAACACGTGACGCACCCACATTGGTTCCGTCTATGTACGAAGAA
AGAATTATCGGCTGCGTTTAAACAATCCCGACTGATCTCGAACAAGCCAC
TGGTGTGGAACGAAAAGAATTAGAAGCGATTTTGGGAGGAAACCCAATGG
CTCTTAGAATACTTGGCTCCACACTCAGGCAGGGTAAAACAATTGCCAAA
GTTGCAAGGCTGTCCACATCTGCTGCTGCTCGAAAAGCTGTTCTCTCCGG
CGAAGAAGAAGCGACGACAATCGTTTGGATGGTACTCAAGAAAGGAGGTG
CTCAACGTTGTAAATGTGGGAACTTCTTTCAATTAGTACCAGGAAAAGCT
AATGCATTGGCTGACTAAGATCCTTTTAACATGAACATTACGAAGGGAGC
ACCTGGAACACGTGACGCACCCACATTGGTTCCGTCTATGTACGAAGAAA
GAATTATCGGCTGCGTTTAAACAATCCCGACTGATCTCGAACAAGCCACT
GGTGTGGAACGAAAAGAATTAGAAGCGATTTTGGGAGGAAACCCAATGGC
TCTTAGAATACTTGGCTCCACACTCAGGCAGGGTAAAACAATTGCCAAAG
TTGCAAGGCTGTCCACATCTGCTGCTGCTCGAAAAGCTGTTCTCTCCGGC
GAAGAAGAAGCGACGACAATCGTTTGGATGGTACTCAAGAAAGGAGGTGC
TCAACGTTGTAAATGTGGGAACTTCTTTCAATTAGTACCAGGAAAAGCTA
ATGCATTGGCTGACTAAGATCCTTTTAACATGAACATTACGAAGGGAGCA
CCTGGAACACGTGACGCACCCACATTGGTTCCGTCTATGTACGAAGAAAG
AATTATCGGCTGCGTTTAAACAATCCCGACTGATCTCGAACAAGCCACTG
GTGTGGAACGAAAAGAATTAGAAGCGATTTTGGGAGGAAACCCAATGGCT
CTTAGAATACTTGGCTCCACACTCAGGCAGGGTAAAACAATTGCCAAAGT
TGCAAGGCTGTCCACATCTGCTGCTGCTCGAAAAGCTGTTCTCTCCGGCG
AAGAAGAAGCGACGACAATCGTTTGGATGGTACTCAAGAAAGGAGGTGCT
CAACGTTGTAAATGTGGGAACTTCTTTCAATTAGTACCAGGAAAAGCTAA
TGCATTGGCTGACTAAGATCCTTTTAACATGAACATTACGAAGGGAGCAC
CTGGAACACGTGACGCACCCACATTGGTTCCGTCTATGTACGAAGAAAGA
ATTATCGGCTGCGTTTAAACAATCCCGACTGATCTCGAACAAGCCACTGG
TGTGGAACGAAAAGAATTAGAAGCGATTTTGGGAGGAAACCCAATGGCTC
TTAGAATACTTGGCTCCACACTCAGGCAGGGTAAAACAATTGCCAAAGTT
GCAAGGCTGTCCACATCTGCTGCTGCTCGAAAAGCTGTTCTCTCCG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029483	XLOC_029483	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00046155-exon-scaffold_106-1575043694:58982..59372	TCONS_00046155-exon-scaffold_106-1575043694:58982..59372	Clytia hemisphaerica	exon
TCONS_00046155-exon-scaffold_106-1575043694:45301..45377	TCONS_00046155-exon-scaffold_106-1575043694:45301..45377	Clytia hemisphaerica	exon
TCONS_00046155-exon-scaffold_106-1575043694:44720..44819	TCONS_00046155-exon-scaffold_106-1575043694:44720..44819	Clytia hemisphaerica	exon
TCONS_00046155-exon-scaffold_106-1575043694:43735..44398	TCONS_00046155-exon-scaffold_106-1575043694:43735..44398	Clytia hemisphaerica	exon
TCONS_00046155-exon-scaffold_106-1510915933:58982..59372	TCONS_00046155-exon-scaffold_106-1510915933:58982..59372	Clytia hemisphaerica	exon
TCONS_00046155-exon-scaffold_106-1510915933:45301..45377	TCONS_00046155-exon-scaffold_106-1510915933:45301..45377	Clytia hemisphaerica	exon
TCONS_00046155-exon-scaffold_106-1510915933:44720..44819	TCONS_00046155-exon-scaffold_106-1510915933:44720..44819	Clytia hemisphaerica	exon
TCONS_00046155-exon-scaffold_106-1510915933:43735..44398	TCONS_00046155-exon-scaffold_106-1510915933:43735..44398	Clytia hemisphaerica	exon
TCONS_00046155-exon-scaffold_106-1491911889:58982..59372	TCONS_00046155-exon-scaffold_106-1491911889:58982..59372	Clytia hemisphaerica	exon
TCONS_00046155-exon-scaffold_106-1491911889:45301..45377	TCONS_00046155-exon-scaffold_106-1491911889:45301..45377	Clytia hemisphaerica	exon
TCONS_00046155-exon-scaffold_106-1491911889:44720..44819	TCONS_00046155-exon-scaffold_106-1491911889:44720..44819	Clytia hemisphaerica	exon
TCONS_00046155-exon-scaffold_106-1491911889:43735..44398	TCONS_00046155-exon-scaffold_106-1491911889:43735..44398	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00046155-protein	TCONS_00046155-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_106	supercontig	scaffold_106:43735..59372 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
354.138	361.028	506.742	535.297	246.576	192.541	308.808	323.129	447.271	357.693	486.09	542.092	391.133	409.506	375.985	368.399	495.892	517.477	243.982	234.496	558.958	555.978	364.439	376.306	356.554	339.565	490.94	500.392	341.477	323.628

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002124	Cyt_c_oxidase_su5b

Vocabulary: **Molecular Function**
Term	Definition
GO:0004129	cytochrome-c oxidase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005740	mitochondrial envelope

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005740	mitochondrial envelope
molecular_function	GO:0004129	cytochrome-c oxidase activity

Blast

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BLAST of TCONS_00046155 vs. Swiss-Prot (Human)
Match: COX5B (Cytochrome c oxidase subunit 5B, mitochondrial OS=Homo sapiens GN=COX5B PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 3.292e-26
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 1

Query:  355 STSAAARKAVLSETIPTDLEQATGVERKELEAILGGNPDPFNMNITKGAPGTRDAPTLVPSMYEERIIGCVCEEEATTIVWMVLKKGGAQRC-KCGNFFQLVP 660
            S +AA R       +PTD EQATG+ER+ + A   G  DP+N+   KGA GTR+ P LVPS+  +RI+GC+CEE+ T++VW  L KG AQRC +CG  ++LVP
Sbjct:   23 SGAAAMRSMASGGGVPTDEEQATGLEREIMLAAKKGL-DPYNVLAPKGASGTREDPNLVPSISNKRIVGCICEEDNTSVVWFWLHKGEAQRCPRCGAHYKLVP 124

The following BLAST results are available for this feature:

BLAST of TCONS_00046155 vs. Swiss-Prot (Human)

BLAST of TCONS_00046155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
COX5B	3.292e-26	50.49	Cytochrome c oxidase subunit 5B, mitochondrial OS=...	[more]

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TCONS_00046155 (transcript) - C. hemisphaerica