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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046144 ID=TCONS_00046144|Name=TCONS_00046144|organism=Clytia hemisphaerica|type=transcript|length=1747bp
CGTTTTTAAAAGGAAAGTTACAAATGAATATGAATATAgcactaaaaata
aaatatgaaaatagaaaaaaaagtaatTGTAACAGAAGGAATGGATCATA
AAATCCTGTACCTTAAAATCTGAATactaaccccctggaaaaaattATAT
CTAGCTccctggaaaatgaaaatgtcttCATCCCCTCGAAAAACTAAAGG
ACTTATCGTAGATAAACTTGTCTCGATAATTTAACCCCTCGGAAAAAGAC
CAACTTTGACCAATACAAACTCCCTGGGAAAGCGAAAATTCGTCTTGCAT
AATACCCTTTGGAAATGCTCGTCCGATCCTTGTATGGATATTATCAAAAG
GTCGAAAAATGTTGTTAGATGGCATTGGTTACTAAAGTCAATGAAAGTCA
TCGGAGAAACACTTTGCTTGAACAGCCTTTGTTGGTGATAAGAAAACCTT
TATAAAAATGAGAGCAAACAGTCAAAAAAGACTAGTAGGGCATTGGGATA
TGATATCTAGCCGGTGATACACTTTCTTTAGGTAACTCAGTGATATTATA
TTCCGCCAACGCCGATCCATGTATTTGAGCGTAAAGCTCTTTAGTGACAA
TAAAGATGTTAGGAGTGGCTTTCCAATGTtgagcatcaaaataaacagcG
GCATAAGCTTGATCTTGCTGAGTTCCTCGCCCATCATAAAAAGGGTTTGG
TTGTCGAAGAAGCGTATCAGAATTCAACAGCCCAGGAATGATGTTTCGAT
TCATCATATCAATCAGTTTTAAAATGTCAAGCATTTGATTCCTAACAGTG
TCATATTTATCAATAGGAGAGAAACATTTCTTGATGTTGTGTAGGATGAC
CGAAACTCCACCGATTTGCTGGATGGGAGAATCTTCACCAACTCTAGGAT
GTGTTCCAAGGAGAAATGACTCATAGGAAATCTTGTCTTTCTCGATTTTC
TGGAACATCTTGTATTTCACCATATACATTGAAACTAGCCATTGAGGATG
TGTTTTCCCGAGGTGTAATTTCGACATATCCTCGAAGATATCTTCACCCT
TCAAGTTACAATAAGGAAGATCAAGATTGTAGTAATCATAACGCTCTTGA
TGTGAAACTTGCCACCATTTTAAGAAATCGTAAGCTTCTTCAGGCTCATC
AAGCATGAACAGCATTGAAGGGATATGGGCACGAACGCCTAAATAATCAC
CTCGGTTTAAAAACAAGATATCCAATAAATGTTCCACAGCCAATTCTAAA
GCTAATCGCGAATTGTTTTTCATACCACATACATGAAAAGCTGTTGCTAG
TTCAAAACGTTGCTGACAATAGAGCTGGGTCTGTTCTATTCTCATAAAGT
TACCAACCTCCTCTTTGAATAAGTTTTTATTGAAGAAATTTCGTAGCGGC
GCTGCCTCCTTTTCTAATAATATCATTTTCTTCTTGATATCCTTGCAAAG
TACTTTATGTTTCACCCAATGATCTTTTTGACACTCTTTGGAGCAATATT
TGACGGCCGTACATCTTGAACATCTGTTTTCGGCATCATCTTTTGAACAG
TTACTGCATTTGAATGAAGTGCTTCTTGGAGATACAAAAACGTCactaat
ttttctttcattcatttcaagtttttcaagtCAGCTAAAAAATCAAGAAC
TGGAAAATTAAAATGCATGAAAAATTATAACACAGAACTTTcattaggct
acgtcatatctgcCTTCGCtccgagcgtaaaactcctcctcttcaag Run BLAST on NCBI transcript from alignment at scaffold_106:300762..306599+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046144 ID=TCONS_00046144|Name=TCONS_00046144|organism=Clytia hemisphaerica|type=transcript|length=5838bp|location=Sequence derived from alignment at scaffold_106:300762..306599+ (Clytia hemisphaerica)
CGTTTTTAAAAGGAAAGTTACAAATGAATATGAATATAgcactaaaaata
aaatatgaaaatagaaaaaaaagtaatTGTAACAGAAGGAATGGATCATA
AAATCCTGTACCTTAAAATCTGAATactaaccccctggaaaaaattATAT
CTAGCTccctggaaaatgaaaatgtcttCATCCCCTCGAAAAACTAAAGG
ACTTATCGTAGATAAACTTGTCTCGATAATTTAACCCCTCGGAAAAAGAC
CAACTTTGACCAATACAAACTCCCTGGGAAAGCGAAAATTCGTCTTGCAT
AATACCCTTTGGAAATGCTCGTCCGATCCTTGTATGGATATTATCAAAAG
GTCGAAAAATGTTGTTAGATGGCATTGGTTACTAAAGTCAATGAAAGTCA
TCGGAGAAACACTTTGCTTGAACAGCCTTTGTTGGTGATAAGAAAACCTT
TATAAAAATGAGAGCAAACAGTCAAAAAAGACTAGTAGGGCATTGGGATA
TGATATCTAGCCGGTGATACACTTTCTTTAGGTAACTCAGTGATATTATA
TTCCGCCAACGCCGATCCATGTATTTGAGCGTAAAGCTCTTTAGTGACAA
TAAAGATGTTAGGAGTGGCTTTCCAATGTtgagcatcaaaataaacagcG
GCATAAGCTTGATCTTGCTGAGTTCCTCGCCCATCATAAAAAGGGTTTGG
TTGTCGAAGAAGCGTATCAGAATTCAACAGCCCAGGAATGATGTTTCGAT
TCATCATATCAATCAGTTTTAAAATGTCAAGCATTTGATTCCTAACAGTG
TCATATTTATCAATAGGAGAGAAACATTTCTTGATGTTGTGTAGGATGAC
CGAAACTCCACCGATTTGCTGGATGGGAGAATCTTCACCAACTCTAGGAT
GTGTTCCAAGGAGAAATGACTCATAGGAAATCTTGTCTTTCTCGATTTTC
TGGAACATCTTGTATTTCACCATATACATTGACACTAGCCATTGAGGATG
CGTTTTTNACATCTTGTATTTCACCATATACATTGAAACTAGCCATTGAG
GATGTGTTTTCCCGAGGTGTAATTTCGACATATCCTCGAAGATATCTTCA
CCCTTCAAGTTACAATAAGGAAGATCAAGATTGTAGTAATCATAACGCTC
TTGATGTGAAACTTGCCACCATTTTAAGAAATCGTAAGCTTCTTCAGGCT
CATCAAGCATGAACAGCATTGAAGGGATATGGGCACGAACGCCTAAATAA
TCACCTCGGTTTAAAAACAAGATATCCAATAAATGTTCCACAGCCAATTC
TAAAGCTAATCGCGAATTGTTTTTCATACCACATACATGAAAAGCTGTTG
CTAGTTCAAAACGTTGCTGACAATAGAGCTGGGTCTGTTCTATTCTCATA
AAGTTACCAACCTCCTCTTTGAATAAGTTTTTATTGAAGAAATTTCGTAG
CGGCGCTGCCTCCTTTTCTAATAATATCATTTTCTTCTTGATATCCTTGC
AAAGTACTTTATGTTTCACCCAATGATCTTTTTGACACTCTTTGGAGCAA
TATTTGACGGCCGTACATCTTGAACATCTGCTTTGAGCCTCATTTTTTGA
ACAATTACTGCATTCAAACGAAGTGCTTCTTGGGGAAACCGTCGTTtcgc
ttatttttcttttttctttgtgcattcttagtttttttcctggaaagaaa
aataaaccgtTCTTTGGTTAGGTTAGGAATAAGTATTAGTCAGGAAATAG
TGTATAGTTAGGAATATGGTTGCTTTGAAAAATAACaacttttatcattt
ttttccagaaaaaaaaaatttaagatatttcacatgtattgtatttataa
aaatctaaatctaagTTTAAAACGTAAAATTGGAGGAGATTGGAGGTTAT
GAAAATTAACAAGGTAAAATGTATGCCAAATTAAATCTTTTTATATTAAG
GAAAGAAGACGAGTTTTCACAATGAAGATTTACTTCTAGTCTAAAATTAC
CCATAGGGCAACAAACGGTGAACCAGTAAACGGcgagtcgaaaaaaaaaa
aaattctgagaaGTATCTTGGAGAAAAATCTTCTTTGTATCATACATATT
TATAGTCCACAAATATTGTAGGTATATATAGACATTAGAAGAAGACCAGA
CAGTgggtttgaaaaacaaaaatttaatataCCCTTTTGTCAAAAGAGCT
TTAAGAATCTTAAGAAGCTttaagacttcgatggccaaaatattaagtta
aaaaggttttatttaccaacacttttatcaaaaaattgtggAAATAAGAA
CGCTCTAAGAATatatttaggcttaaaacttaaaaatgttTAGAATATCT
TGGCTTAAAAGATTTTCGACATAGTGACTGGCAAACATAAAATGGATTGG
AGGCACTTGGAGCCTTGAAATCCTTAAAGCACAGAAGTCAGTCATTTAGC
CGGGTACTGTAGAAAAATGCTTCAAAATAAAAACTATGTACATTTTAAAC
TATATACATCTAAAAATATAAATATATCATATGTAGGTTCTAAAATAAAC
TTTTTCTTTTGTATAAAATAAAAATATGAACACAATGCTGATACGGCAAA
AAATATCCCAGGTCTAAGTATCTTAATGAAACGCATCCATTTCTGGAATG
ATACTGATAAAATTCTGAAAATAATCCTTCGATAATTTGATAACAATTTA
TTTTGGTTTCAGGAAAAGGGAAGGTGTAAAAGCGATACCCTACTCTATGG
TCCCGAATAGTAGGTGGTTCAAAACAAAAGGGGTTCGAATTTTTTTTCAA
TTTAACAAGCAGAGGGTCCGAATAAACAGGGGGGGGGAGTTGGTAGACTG
AAAAAAATTCTAATTTTTGCTTTTATCTAATTTTATGAACTTTCAAGCGG
TTCCTACTGATAAAATGGAAATCAAACATGGGATAACAAATTCGGACGTT
CGAAAATTATTACACTTTAACTGAAAATGAGAAAACTAGAAAATTAATAA
ATCAATGAACGGGACGGGGGTCTCTTAAAACGAGAGGGGGTCCCTTAAAA
CGAGAGGGGGTCCCTTAAAAGAACAGTTGGGTCCTAAAAGGAACGGGTTA
CGATCTGAAAACCATTGAAAGTTAATAAATGGGGTATGTTTATTCGGGAC
CTAAGAGTAGGGGACTTAGGAATCTATAAGACAATTGGAAGTTGAAACAA
TGTAGGGCAAAGCCAATAACATAGGTCAGAGGGGCAAGAAAAATGACAAA
GAATAGAAACTCATTTAGCCTCGTTAAAGAATCTTCAGAACACAAGAAAT
CGATATATAATATGAATCTTAAGAAAGTCGAGTGAACCCTTGCCTTAGAA
AATAAGAACCCTGTANATGTACATTTTAAACTATATAcatctaaaaatat
aaatatatcaTATGTAGGTtctaaaataaactttttcttttgtataaaat
aaaaatatgaacaCAATGCTGATACGGCAAAAAATATCCCAGGTCTAAGT
ATCTTAATGAAACGCATCCATTTCTGGAATGATACTgataaaattctgaa
aataatcCTTCGATAATTTGATAACAATTTATTTTGGTTTCAGGAAAAGG
GAAGGTGTAAAAGCGATACCCTACTATATGGTCCCGAATAGTAGGTGGTT
CAAAACAAAAGGGgttcgaattttttttcaatttaacaaGCAGAGGGTcc
gaataaacaggggggggggagttggtagactgaaaaaaattctaattttt
gcTTTTATCTAATTTTATGAACTTTTAAGCGGTTCCTACTGATAAAATGG
AAATCAAACATGGGATAACAAATTCGGACGTTCGAAAATTATTACACTTT
AactgaaaatgagaaaactaGAAAATTAATTAATCAATGAACGGGACGGG
GGTCTCTTAAAACGAGAGGGGGTCCCTTAAAAGAACAGTTGGGTCCTAAA
AGGAACGGGTTACGATCTGAAAACCATTGAAAGTTAATAAATGGGGTATG
TTTATTCGGGACCTAAGAGTAGGGGACTTAGGAATCTATAAGACAATTGG
AAGTTGAAACAATGTAGGGCAAAGCCAATAACATAGGTCAGAGGGGCAAG
AAAAATGACAAAGAATAGAAACTCATTTAGCCTCGTTAAAGAATCTTCAG
AACACAAGAAATCGATATATAATATGAATCTTAAGAAAGTCGAGTGAACC
CTTGCCTTAGAAAATAAGAACCCTGTAAGAAAACACaagaaaatacaaac
aaaacaaaagtaacaaaatgaaaattttaaaacacaaaattCTAAAACAT
TATAAATATCAGCCAATTTGCTTTCAAAGTTAAAAGTTCTCAGTTTTCGT
CGTCAagaaacaagttttttttaaatgtttttcttcacTACAGATAAATT
TGAATCCTATACCGAGAGCATAATATATCAATTCTCCATGGCAACAAAGT
ACAAGGTTACTCTTCATGGTCACCCATATCCTCCTCGTCACTGCTTTCAT
CATCAGAGCAACCACACTGGCAACACGCTCATCAAAGGAAGCTCCTTGAT
ATTCTTCAGGGCTTGTCGCTTACCATGCATACCCATATAAAGtttcttca
aaaagtataaaacaTTAGGTGTTGCTTTCCAGTTCAAATGTTCGTAATCT
ACAATGTTCCAAGCCTCGTTTTGAGTACCAGCAGCAACATATTGAGGCGT
TTGTTGCCCCAGCAGCACGGACGAATTAAGTAAACCAGGAATGATGAACT
TGTTGACTTTATCAATGTGTTTGCCTAAGGCAACCAATTGAATCGCTAAG
GTTTGGATCTTCTTGTCCATGCCAGGGGAAATAGCTTCTTTGATGTGCTC
AAGAGCCAGCCAAACACCATTCAGCTTCAACACAGGCGAATCTTCACCTA
ACTTAGGATCAGTGCCCAGAAGAAAAGCATCGTAAGATGCTTTATCTAGT
TTCAACTGTCGTATTAGTTTATATTTGATGAGGAATAGGTCAACGTACCT
GTGAACATCGGTGTGGTTGGTCAGTTTAAGCTCAGACAACGATTCGTACA
TATCCTCGCCCTTCAGATTGCAATACGGTAGCTTCATGTCATAACAACAC
GAAATGAGATCTCGATCTTGCCACCATTTCAAGAAATCATATGCTTCTTG
AACTTCCCCTAAAATACAAAGTGTCGAGGGAATGTGCAAACGAACACCGA
GGTTATCTCCACGACACAACCAGATCAAATCCAACATATGTTCGACAGAA
AGCTCTAAAGCCAGTTTCGAGTTATTATTCATGCCACATGAACGTAGCTT
TAAAGCAAGTCCCAGTCTCTCCTTACAATAGTTTCTTGGTTCAACCAATC
TCCAGAAAATTCCAATAGCAACTTTGAAAAGACTCCCAGGTAGAAGGTCT
TCAAGTTCATAAAACTGTCGTAAAGTTTCAGCTTCTTTTGCCACAATCTT
GGTACGTCTTTTGATTTCATTGCAATGAGTTTTGTGTTTCACCCAATGAT
CTTTTTGACATTCTTTGGAGCAATATTTGACGGCCGTACATCTTGAACAT
CTGTTTTCGGCATCACCTTTTGAACAGTTACTGCATTTNTTTGACGGCCG
TACATCTTGAACATCTGTTTTCGGCATCATCTTTTGAACAGTTACTGCAT
TTGAATGAAGTGCTTCTTGGAGATACAAAAACGTCactaatttttctttc
attcatttcaagtttttcaagtCAGCTAAAAAATCAAGAACTGGAAAATT
AAAATGCATGAAAAATTATAACACAGAACTTTcattaggctacgtcatat
ctgcCTTCGCtccgagcgtaaaactcctcctcttcaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046144-exon-scaffold_106-1491911889:300762..301738 | TCONS_00046144-exon-scaffold_106-1491911889:300762..301738 | Clytia hemisphaerica | exon |
| TCONS_00046144-exon-scaffold_106-1510915933:300762..301738 | TCONS_00046144-exon-scaffold_106-1510915933:300762..301738 | Clytia hemisphaerica | exon |
| TCONS_00046144-exon-scaffold_106-1575043694:300762..301738 | TCONS_00046144-exon-scaffold_106-1575043694:300762..301738 | Clytia hemisphaerica | exon |
| TCONS_00046144-exon-scaffold_106-1491911889:301793..302327 | TCONS_00046144-exon-scaffold_106-1491911889:301793..302327 | Clytia hemisphaerica | exon |
| TCONS_00046144-exon-scaffold_106-1510915933:301793..302327 | TCONS_00046144-exon-scaffold_106-1510915933:301793..302327 | Clytia hemisphaerica | exon |
| TCONS_00046144-exon-scaffold_106-1575043694:301793..302327 | TCONS_00046144-exon-scaffold_106-1575043694:301793..302327 | Clytia hemisphaerica | exon |
| TCONS_00046144-exon-scaffold_106-1491911889:306365..306599 | TCONS_00046144-exon-scaffold_106-1491911889:306365..306599 | Clytia hemisphaerica | exon |
| TCONS_00046144-exon-scaffold_106-1510915933:306365..306599 | TCONS_00046144-exon-scaffold_106-1510915933:306365..306599 | Clytia hemisphaerica | exon |
| TCONS_00046144-exon-scaffold_106-1575043694:306365..306599 | TCONS_00046144-exon-scaffold_106-1575043694:306365..306599 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:300762..306599 + |
Blast
The following BLAST results are available for this feature:
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