TCONS_00004593 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004593
Unique NameTCONS_00004593
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004593 ID=TCONS_00004593|Name=TCONS_00004593|organism=Clytia hemisphaerica|type=transcript|length=356bp
tcttgatgaaaaaatttgacaaaacagTTGTTCCTTTTTACAGATCTTAA
TACTAACATACTTCACTTCCCAAGCCTGCAAAAACTTTCAGTATCTAAAA
ATGGTGATAAAGCAGTCTCCATTCATTAGCAAGGTTGAATGTACATAAGA
CTGCATATAGCATGATGAGAATAGGCAGATAGGACCTAAAATGTTTTAAT
agttttgacaatttttgaaaaaaaataaagaaaaaattcttttcgtaTGA
CAAATGAGACCAGATGGCTTTAGATGGCTAAAAACacataaaacattttc
aaaacagtaaaatttcacagaaaattgaaaattaacaaatcacttttaat
tttttt
Run BLAST on NCBI

transcript from alignment at sc0000045:526853..527208

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004593 ID=TCONS_00004593|Name=TCONS_00004593|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at sc0000045:526853..527208 (Clytia hemisphaerica)
aaaaaaattaaaagtgatttgttaattttcaattttctgtgaaattttac
tgttttgaaaatgttttatgtGTTTTTAGCCATCTAAAGCCATCTGGTCT
CATTTGTCAtacgaaaagaattttttctttattttttttcaaaaattgtc
aaaactATTAAAACATTTTAGGTCCTATCTGCCTATTCTCATCATGCTAT
ATGCAGTCTTATGTACATTCAACCTTGCTAATGAATGGAGACTGCTTTAT
CACCATTTTTAGATACTGAAAGTTTTTGCAGGCTTGGGAAGTGAAGTATG
TTAGTATTAAGATCTGTAAAAAGGAACAActgttttgtcaaattttttca
tcaaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002587XLOC_002587Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004593-exon-sc0000045-1491911889:526853..527208TCONS_00004593-exon-sc0000045-1491911889:526853..527208Clytia hemisphaericaexon
TCONS_00004593-exon-sc0000045-1510915933:526853..527208TCONS_00004593-exon-sc0000045-1510915933:526853..527208Clytia hemisphaericaexon
TCONS_00004593-exon-sc0000045-1575043694:526853..527208TCONS_00004593-exon-sc0000045-1575043694:526853..527208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:526853..527208 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.48269	0.941398	0.546526	2.13876	1.30187	0	1.55144	1.45244	0.406754	0.251915	0.733545	0.642938	0.802555	0.333385	0.411131	0.882413	0.181177	0.742802	1.28278	1.07387	1.40008	1.36582	1.38361	1.50948	0	0	2.31652	0.706359	1.60725	1.36461
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top