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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004609 ID=TCONS_00004609|Name=TCONS_00004609|organism=Clytia hemisphaerica|type=transcript|length=4335bpRun BLAST on NCBI protein sequence of TCONS_00004609-protein >TCONS_00004609-protein ID=TCONS_00004609-protein|Name=TCONS_00004609-protein|organism=Clytia hemisphaerica|type=polypeptide|length=803bp FRSGKYSAVKNPVFTLNDVSCSVVFSLKNNQNNVKNDDFIQEEPVSKPAGRun BLAST on NCBI transcript from alignment at sc0000047:10809..55679+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004609 ID=TCONS_00004609|Name=TCONS_00004609|organism=Clytia hemisphaerica|type=transcript|length=44871bp|location=Sequence derived from alignment at sc0000047:10809..55679+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000047:10809..55679+ >TCONS_00004609 ID=TCONS_00004609|Name=TCONS_00004609|organism=Clytia hemisphaerica|type=CDS|length=50652bp|location=Sequence derived from alignment at sc0000047:10809..55679+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004609 vs. Swiss-Prot (Human)
Match: HECD2 (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2) HSP 1 Score: 674.085 bits (1738), Expect = 0.000e+0 Identity = 345/753 (45.82%), Postives = 494/753 (65.60%), Query Frame = 1
Query: 220 SPRDKNGSVTTSVQELPKGSDSAGKGGVGNQSKKLVSIS---------DTPFKLQQLPKLKTA-EPPS--------AKNKHDVAKNNQXXXXXXXAENPSKIKNYEDFSAAVLEAKITENYKEIRSFFEFIYGSFEELVKMFKVDDASHNQSYVD--LDLEFLDYVDQSIKRMPKDMQKIVLRSIINSIMKDHKGIKKTADHLRGYLILLLNPLFSDTSTYVIFAHLLRQIASFQSSEHHYLLAWFRRLDIPIFERIVNKIKLFVGYVLFPTK-NDVPDGDKSIWWIPSAVKVLALFNAANEQTNERRVPTSAFYIQAIELLELVTEYQTWQS--GVQKFSFCQYPFLLSLRAKRFIMQKDSETKMLLEARQSLVNKVRQKQKPSMGMLFLNLDIRRNNLLEDSLKEISKKRADLKKKLRVIFKGEPGIDLGGVSKEWFFLLIQKFFKEDYGMFKYSEKRHNWWFTASSKDSFKEYNLCGVLLGLAIYNGINLDIRFPPIVYKKLLSPAIVPYNNPHAYVGVVPAGVDDLKQVYPEVAQGLRDLLEYDGDVEDDLCQTFMISFTENGQTMNRQLKTNGDTIPVTNLNRQEYVNLYCDYLVNKCIYQQFYSFYHGFHSVCASNALLLLRPEEVETLVIGNPNFNIKDLEKITKYDGFKRTDATIRYFWETVHEFDQKLQRKLLFFSTGSDRIPVGGFKEMKFKITRIAGQNAINMLPMAHTCFNQLCLPSYKSRKDIHEKLLIAISNAEGFGLE 2409
S R+K + ++ G D KG + S + ++S +P L P +K EPP + D + + P P P + K +DF V + K + ++K + F+ + SF EL FK D + + D ++ +F++ V ++ P+D+QK VL+ IINS++++ KG +T D LR Y ILL NP F++TSTYVI+AHLLRQIA+ ++HH+L+ WF++L F+++V ++ F+ LFP K + P K WWIPSA KVLAL N AN + +P + FY ++ ++L+ EY TWQ+ +FSFCQYPF++S+ AK+ I+Q+DSE +M+ ARQSLV+KV ++Q+P M +LFLN+ +RR +L+ DSL E+++KRADLKKKL+V F GE G+D+GG++KEWF LLI++ F DYGMF Y + H WF++ D++ E+ L G+L+GLA+YN I LDIRFPP YKKLLSP I+P ++ + VG+ VDDL Q+ PE+A GL +LL ++G+VE+D TF + E G + LK GD I VTN NR+EYV LY D+L+NK IY+QF +FY+GFHSVCASNAL+LLRPEEVE LV G+P+ ++ L++ T+YDG+ +TD TI+YFW+ V F LQ+KLL F+TGSDR+PVGG ++ FKI++ + + N LP+AHTCFNQLCLP YKS+KD+ +KL+I ISN+EGFGLE
Sbjct: 29 SEREKLPPIVSAGAGATAGLDRGAKGQISTFSSFISAVSPKKEAAENRSSPAHLV-FPNIKNVREPPPICLDVRQKQRTSMDASSSEMKAPVLPEPILPIQPKTVKDFQEDVEKVKSSGDWKAVHDFYLTTFDSFPELNAAFKKDATASFNTIEDSGINAKFVNAVYDTLLNTPQDVQKTVLKGIINSLLREWKG-PRTKDDLRAYFILLQNPQFNNTSTYVIYAHLLRQIATLVEADHHFLVHWFKKLSQKRFKQLVERLLQFISLRLFPAKPEEFPPITKCSWWIPSAAKVLALLNTANNLVHPPLIPYTDFYNSTLDHIDLMEEYHTWQNFGNSHRFSFCQYPFVISVAAKKIIIQRDSEQQMINIARQSLVDKVSRRQRPDMNILFLNMKVRRTHLVSDSLDELTRKRADLKKKLKVTFVGEAGLDMGGLTKEWFLLLIRQIFHPDYGMFTYHKDSHCHWFSSFKCDNYSEFRLVGILMGLAVYNSITLDIRFPPCCYKKLLSPPIIP-SDQNIPVGICNVTVDDLCQIMPELAHGLSELLSHEGNVEEDFYSTFQVFQEEFGIIKSYNLKPGGDKISVTNQNRKEYVQLYTDFLLNKSIYKQFAAFYYGFHSVCASNALMLLRPEEVEILVCGSPDLDMHALQRSTQYDGYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLNFKISK--NETSTNCLPVAHTCFNQLCLPPYKSKKDLKQKLIIGISNSEGFGLE 776 The following BLAST results are available for this feature:
BLAST of TCONS_00004609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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