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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047818 ID=TCONS_00047818|Name=TCONS_00047818|organism=Clytia hemisphaerica|type=transcript|length=3004bp
NNTTCTCAAAAGCCCAATCAGTGTATCAAATACCTGCTAGAAGAAACAGA
CTTAAAATCACCAGAACTAACTGAACATATTAACActttattgaaagttt
ttcctgTCAAATCATACCAAGGGGATTCTAAAGTCATTAATGGCACTGGT
AATCTGTTGTTGAAAGCAGGAGATGTTCAGAagaatatttcatttttgaa
acagattttcaagtttgttgagaaaaaaaagagaaagaaagacGTTTTCG
TATTCCAAGAAGGGACGGAGAAGGTGATTGGAGAGTTGATGAAGTCCATT
TCATGGGAATCAATTAGAGAGAGTGTTGAAAATGCTATCACCCTTACTGA
ACCATTGCAGTATAAATCCTGGATGGACGTCGCTTCTATTGCTGATAATA
GTGATCTTGCCAATATCATTATAGAATTGAGTCATGCTCAACTATATGAT
GATTATATCGAAGTTTTGCTATGGGAGAAAATCTTTCATGAAGTTTGCAA
GAGCAAGTGTTTGAATGAACGTTGGTTCAAAACATTGTTGAATGATGAAT
CAATAAGGATTGACTTTGTCATTTCATCCAAATTTGCAATAGAAGCTATT
AAAAGTGAGAACAAAACACTTTATCCTTCCATCTCTACTCTTCTAAGAAA
TACCATTAAAAGTACTGAAGATCTCATTTACATTGATGAGGAAATATTGC
CTGGTGTTCTTCGAGATATATTTGAAGTGTTATTCAATTATTATGATCAA
TTTTCAAGCGAATTAAAAGAGCTGGTTACATGTTTGCTTGACAAAAACTA
TCACTTCATGGTCGGAAAAGCTCTGCTCAAATTATCAGTGTTAAATTTTC
CCAATCCAGAGGGTTTTGAGATGGTCTACGAGAAATCTTTGGACAGTTTC
ATAACGGAATGCgatgaaattgaagaagaattTGAAGATGAATTAATGGA
TGCGATCAAAATCTTTATCCAAAGGAATATTGTGAATTCCACCTtgttta
aaaagttattcaaatttGTGTGCAAAACGATGGGAGAATCTTGTATTAGT
GACATCATTATTAAGATAATGGAACAATGCTCAATATCAGAGAAAAACAG
CTCAATTGACTTTTTGGAACAATTGATTCAACATTACATTACTTTGATAA
AGAATGATCGGTATGTTGATAGCGAAATGATGGCTTCTTTGTTAATTGTC
TTATTGAAAACTAAAGAAGAGTCATTGTCAAAGTATTTGAAAGATTTGGT
GGAAAGCAAACCCATCAGTGAAAAGATTCTTGTTTCCCAAACTACACTCT
CCTCAATTTTTTCTGTCACAAACCAGAAGAGTTTCAGTGGCTTTACAGCA
AGCAAATATTTTCGAGTAATTCTCACAAGCTATGTCAACATCATCAATAC
TAAACCAACGAAATCGAATCAGCTACCAACTCCTGACACATATAAAAGTG
TTTTGATTTACTTAGTGACTAATTGTGATTGGCCATCATCTATTGAGCTT
TTAAGAATCTTACTTGATTCAGAATTCTACAAGAAAGATTTTGATATCAG
TATGTTTTGTTTGTCGCAATTGAAATGTCGTAATACAGAACCTTATAAAA
TGTTTCTCAAATCCACTGTTGATGCTTTGAATGCATATCTAAATGATGAA
GAAGATTCAAAGGATGTTCCAGATTTCATTTATCAACACATACTCAAATT
TGTgagaattttgtttaaaaatgattGCTTCAATGATATTCTATTGTATT
TGTTGTCATCTGAAGCGTTCCAAGCAAATGGAAAAATTGATTCTGTAGCA
ATGAAAGATTATAGTTCTCTCTTACAAAGGCTTATCTCTGATCTTAAGAG
AGACTTTAATACTGACAAACCTTACGGTCAACTAATGTTGATAAGGGTAC
AAAACTTGGAATTCAAAAGCGTAAAGCCAAAACTCACCTGGAAACAACCA
ACATCCGACATCTTTCAAAATCATCTTTTGGTTAATGATTTCTTGAGAAG
TGAAAGAGACACTTTTATTTATCGAGATGCTTTTACTACAACTGAAGATG
CAAGAAGGTGGGTGCGATCTTATAGCTTTGACCGTATCTTTACAGCAGTC
ATCAGAAATAATAATGGAGTTGTTGAAGTTCTTCTCCAAAAACATCAGGA
ACAATatgaaaaggagaaaaaatattACTTCAAAAATATGGCTGAACTGC
ATAGACTTAAAAGAAAACTGAAACTTCATTTTCCTGAGCTTTACATTCAA
CATAACAACAAGAGACTTTTACAAAATGATTGTTCTGGTGTACCCTGAAA
GTGGAAAAGTCCAATATTTAGTCAAGCTTAACTTGAGTTGTACCCTTGAA
GCGGTGCCAACTTGATAAGAGCTTACGTATTCATTTGTTACATTTATATT
GCATTTTTATTTAACCTCGAAATGCCTTTTTCAGCGTTACGTATACATTT
GATATGCTTTGGAATGAAATAATAGTTTGAAATCCAACCTACTAACATTG
GTTGGCAAAGAGAAGTTAATAAAGATATTGAATAGATATAATAGTATTTA
cataaataaatttaatactTTGAATTTTCTGAAACTGTGTGCCACATACT
TACCGAGTGTGAATAGTTGGggcttttaaatgttttaatacTGGATATGC
CTGTGAGTGTTATGCTTCTAAATCATGCATTTctcttaaaggtttttttt
ttaaataaggctTGCTTACTGGTCACTTTTAATTCAAGCTTTTCATTGGA
TTGACagggatgtggagcaagattggtcagaaagagggaaagaaaaacat
tttttttgctaatatcagcatgatataacaataggcagacaactgtcctg
atatgaaatgtgtctgatatgaaacgggaacccttatgaaaaaataaaac
ctttaatgtaATGTAAACTGCTTCCTGCGATTATTTGATACGTTCTTTTT
TTGATataactctttttcttttttatataaataagtCTTTATTTTAAGTA
GGTA Run BLAST on NCBI protein sequence of TCONS_00047818-protein >TCONS_00047818-protein ID=TCONS_00047818-protein|Name=TCONS_00047818-protein|organism=Clytia hemisphaerica|type=polypeptide|length=765bp
XSQKPNQCIKYLLEETDLKSPELTEHINTLLKVFPVKSYQGDSKVINGTG
NLLLKAGDVQKNISFLKQIFKFVEKKKRKKDVFVFQEGTEKVIGELMKSI
SWESIRESVENAITLTEPLQYKSWMDVASIADNSDLANIIIELSHAQLYD
DYIEVLLWEKIFHEVCKSKCLNERWFKTLLNDESIRIDFVISSKFAIEAI
KSENKTLYPSISTLLRNTIKSTEDLIYIDEEILPGVLRDIFEVLFNYYDQ
FSSELKELVTCLLDKNYHFMVGKALLKLSVLNFPNPEGFEMVYEKSLDSF
ITECDEIEEEFEDELMDAIKIFIQRNIVNSTLFKKLFKFVCKTMGESCIS
DIIIKIMEQCSISEKNSSIDFLEQLIQHYITLIKNDRYVDSEMMASLLIV
LLKTKEESLSKYLKDLVESKPISEKILVSQTTLSSIFSVTNQKSFSGFTA
SKYFRVILTSYVNIINTKPTKSNQLPTPDTYKSVLIYLVTNCDWPSSIEL
LRILLDSEFYKKDFDISMFCLSQLKCRNTEPYKMFLKSTVDALNAYLNDE
EDSKDVPDFIYQHILKFVRILFKNDCFNDILLYLLSSEAFQANGKIDSVA
MKDYSSLLQRLISDLKRDFNTDKPYGQLMLIRVQNLEFKSVKPKLTWKQP
TSDIFQNHLLVNDFLRSERDTFIYRDAFTTTEDARRWVRSYSFDRIFTAV
IRNNNGVVEVLLQKHQEQYEKEKKYYFKNMAELHRLKRKLKLHFPELYIQ
HNNKRLLQNDCSGVP Run BLAST on NCBI transcript from alignment at scaffold_136:308436..311439 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047818 ID=TCONS_00047818|Name=TCONS_00047818|organism=Clytia hemisphaerica|type=transcript|length=3004bp|location=Sequence derived from alignment at scaffold_136:308436..311439 (Clytia hemisphaerica)
TACCTACTTAAAATAAAGacttatttatataaaaaagaaaaagagttatA
TCAAAAAAAGAACGTATCAAATAATCGCAGGAAGCAGTTTACATtacatt
aaaggttttattttttcataagggttcccgtttcatatcagacacatttc
atatcaggacagttgtctgcctattgttatatcatgctgatattagcaaa
aaaaatgtttttctttccctctttctgaccaatcttgctccacatccctG
TCAATCCAATGAAAAGCTTGAATTAAAAGTGACCAGTAAGCAagccttat
ttaaaaaaaaaacctttaagagAAATGCATGATTTAGAAGCATAACACTC
ACAGGCATATCCAgtattaaaacatttaaaagccCCAACTATTCACACTC
GGTAAGTATGTGGCACACAGTTTCAGAAAATTCAAagtattaaatttatt
tatgTAAATACTATTATATCTATTCAATATCTTTATTAACTTCTCTTTGC
CAACCAATGTTAGTAGGTTGGATTTCAAACTATTATTTCATTCCAAAGCA
TATCAAATGTATACGTAACGCTGAAAAAGGCATTTCGAGGTTAAATAAAA
ATGCAATATAAATGTAACAAATGAATACGTAAGCTCTTATCAAGTTGGCA
CCGCTTCAAGGGTACAACTCAAGTTAAGCTTGACTAAATATTGGACTTTT
CCACTTTCAGGGTACACCAGAACAATCATTTTGTAAAAGTCTCTTGTTGT
TATGTTGAATGTAAAGCTCAGGAAAATGAAGTTTCAGTTTTCTTTTAAGT
CTATGCAGTTCAGCCATATTTTTGAAGTaatattttttctccttttcatA
TTGTTCCTGATGTTTTTGGAGAAGAACTTCAACAACTCCATTATTATTTC
TGATGACTGCTGTAAAGATACGGTCAAAGCTATAAGATCGCACCCACCTT
CTTGCATCTTCAGTTGTAGTAAAAGCATCTCGATAAATAAAAGTGTCTCT
TTCACTTCTCAAGAAATCATTAACCAAAAGATGATTTTGAAAGATGTCGG
ATGTTGGTTGTTTCCAGGTGAGTTTTGGCTTTACGCTTTTGAATTCCAAG
TTTTGTACCCTTATCAACATTAGTTGACCGTAAGGTTTGTCAGTATTAAA
GTCTCTCTTAAGATCAGAGATAAGCCTTTGTAAGAGAGAACTATAATCTT
TCATTGCTACAGAATCAATTTTTCCATTTGCTTGGAACGCTTCAGATGAC
AACAAATACAATAGAATATCATTGAAGCaatcatttttaaacaaaattct
cACAAATTTGAGTATGTGTTGATAAATGAAATCTGGAACATCCTTTGAAT
CTTCTTCATCATTTAGATATGCATTCAAAGCATCAACAGTGGATTTGAGA
AACATTTTATAAGGTTCTGTATTACGACATTTCAATTGCGACAAACAAAA
CATACTGATATCAAAATCTTTCTTGTAGAATTCTGAATCAAGTAAGATTC
TTAAAAGCTCAATAGATGATGGCCAATCACAATTAGTCACTAAGTAAATC
AAAACACTTTTATATGTGTCAGGAGTTGGTAGCTGATTCGATTTCGTTGG
TTTAGTATTGATGATGTTGACATAGCTTGTGAGAATTACTCGAAAATATT
TGCTTGCTGTAAAGCCACTGAAACTCTTCTGGTTTGTGACAGAAAAAATT
GAGGAGAGTGTAGTTTGGGAAACAAGAATCTTTTCACTGATGGGTTTGCT
TTCCACCAAATCTTTCAAATACTTTGACAATGACTCTTCTTTAGTTTTCA
ATAAGACAATTAACAAAGAAGCCATCATTTCGCTATCAACATACCGATCA
TTCTTTATCAAAGTAATGTAATGTTGAATCAATTGTTCCAAAAAGTCAAT
TGAGCTGTTTTTCTCTGATATTGAGCATTGTTCCATTATCTTAATAATGA
TGTCACTAATACAAGATTCTCCCATCGTTTTGCACACaaatttgaataac
tttttaaacaAGGTGGAATTCACAATATTCCTTTGGATAAAGATTTTGAT
CGCATCCATTAATTCATCTTCAaattcttcttcaatttcatcGCATTCCG
TTATGAAACTGTCCAAAGATTTCTCGTAGACCATCTCAAAACCCTCTGGA
TTGGGAAAATTTAACACTGATAATTTGAGCAGAGCTTTTCCGACCATGAA
GTGATAGTTTTTGTCAAGCAAACATGTAACCAGCTCTTTTAATTCGCTTG
AAAATTGATCATAATAATTGAATAACACTTCAAATATATCTCGAAGAACA
CCAGGCAATATTTCCTCATCAATGTAAATGAGATCTTCAGTACTTTTAAT
GGTATTTCTTAGAAGAGTAGAGATGGAAGGATAAAGTGTTTTGTTCTCAC
TTTTAATAGCTTCTATTGCAAATTTGGATGAAATGACAAAGTCAATCCTT
ATTGATTCATCATTCAACAATGTTTTGAACCAACGTTCATTCAAACACTT
GCTCTTGCAAACTTCATGAAAGATTTTCTCCCATAGCAAAACTTCGATAT
AATCATCATATAGTTGAGCATGACTCAATTCTATAATGATATTGGCAAGA
TCACTATTATCAGCAATAGAAGCGACGTCCATCCAGGATTTATACTGCAA
TGGTTCAGTAAGGGTGATAGCATTTTCAACACTCTCTCTAATTGATTCCC
ATGAAATGGACTTCATCAACTCTCCAATCACCTTCTCCGTCCCTTCTTGG
AATACGAAAACgtctttctttctcttttttttctcaacaaacttgaaaat
ctgtttcaaaaatgaaatattctTCTGAACATCTCCTGCTTTCAACAACA
GATTACCAGTGCCATTAATGACTTTAGAATCCCCTTGGTATGATTTGAca
ggaaaaactttcaataaagTGTTAATATGTTCAGTTAGTTCTGGTGATTT
TAAGTCTGTTTCTTCTAGCAGGTATTTGATACACTGATTGGGCTTTTGAG
AANN Coding sequence (CDS) from alignment at scaffold_136:308436..311439 >TCONS_00047818 ID=TCONS_00047818|Name=TCONS_00047818|organism=Clytia hemisphaerica|type=CDS|length=2298bp|location=Sequence derived from alignment at scaffold_136:308436..311439 (Clytia hemisphaerica)
TCAGGGTACACCAGAACAATCATTTTGTAAAAGTCTCTTGTTGTTATGTT
GAATGTAAAGCTCAGGAAAATGAAGTTTCAGTTTTCTTTTAAGTCTATGC
AGTTCAGCCATATTTTTGAAGTaatattttttctccttttcatATTGTTC
CTGATGTTTTTGGAGAAGAACTTCAACAACTCCATTATTATTTCTGATGA
CTGCTGTAAAGATACGGTCAAAGCTATAAGATCGCACCCACCTTCTTGCA
TCTTCAGTTGTAGTAAAAGCATCTCGATAAATAAAAGTGTCTCTTTCACT
TCTCAAGAAATCATTAACCAAAAGATGATTTTGAAAGATGTCGGATGTTG
GTTGTTTCCAGGTGAGTTTTGGCTTTACGCTTTTGAATTCCAAGTTTTGT
ACCCTTATCAACATTAGTTGACCGTAAGGTTTGTCAGTATTAAAGTCTCT
CTTAAGATCAGAGATAAGCCTTTGTAAGAGAGAACTATAATCTTTCATTG
CTACAGAATCAATTTTTCCATTTGCTTGGAACGCTTCAGATGACAACAAA
TACAATAGAATATCATTGAAGCaatcatttttaaacaaaattctcACAAA
TTTGAGTATGTGTTGATAAATGAAATCTGGAACATCCTTTGAATCTTCTT
CATCATTTAGATATGCATTCAAAGCATCAACAGTGGATTTGAGAAACATT
TTATAAGGTTCTGTATTACGACATTTCAATTGCGACAAACAAAACATACT
GATATCAAAATCTTTCTTGTAGAATTCTGAATCAAGTAAGATTCTTAAAA
GCTCAATAGATGATGGCCAATCACAATTAGTCACTAAGTAAATCAAAACA
CTTTTATATGTGTCAGGAGTTGGTAGCTGATTCGATTTCGTTGGTTTAGT
ATTGATGATGTTGACATAGCTTGTGAGAATTACTCGAAAATATTTGCTTG
CTGTAAAGCCACTGAAACTCTTCTGGTTTGTGACAGAAAAAATTGAGGAG
AGTGTAGTTTGGGAAACAAGAATCTTTTCACTGATGGGTTTGCTTTCCAC
CAAATCTTTCAAATACTTTGACAATGACTCTTCTTTAGTTTTCAATAAGA
CAATTAACAAAGAAGCCATCATTTCGCTATCAACATACCGATCATTCTTT
ATCAAAGTAATGTAATGTTGAATCAATTGTTCCAAAAAGTCAATTGAGCT
GTTTTTCTCTGATATTGAGCATTGTTCCATTATCTTAATAATGATGTCAC
TAATACAAGATTCTCCCATCGTTTTGCACACaaatttgaataacttttta
aacaAGGTGGAATTCACAATATTCCTTTGGATAAAGATTTTGATCGCATC
CATTAATTCATCTTCAaattcttcttcaatttcatcGCATTCCGTTATGA
AACTGTCCAAAGATTTCTCGTAGACCATCTCAAAACCCTCTGGATTGGGA
AAATTTAACACTGATAATTTGAGCAGAGCTTTTCCGACCATGAAGTGATA
GTTTTTGTCAAGCAAACATGTAACCAGCTCTTTTAATTCGCTTGAAAATT
GATCATAATAATTGAATAACACTTCAAATATATCTCGAAGAACACCAGGC
AATATTTCCTCATCAATGTAAATGAGATCTTCAGTACTTTTAATGGTATT
TCTTAGAAGAGTAGAGATGGAAGGATAAAGTGTTTTGTTCTCACTTTTAA
TAGCTTCTATTGCAAATTTGGATGAAATGACAAAGTCAATCCTTATTGAT
TCATCATTCAACAATGTTTTGAACCAACGTTCATTCAAACACTTGCTCTT
GCAAACTTCATGAAAGATTTTCTCCCATAGCAAAACTTCGATATAATCAT
CATATAGTTGAGCATGACTCAATTCTATAATGATATTGGCAAGATCACTA
TTATCAGCAATAGAAGCGACGTCCATCCAGGATTTATACTGCAATGGTTC
AGTAAGGGTGATAGCATTTTCAACACTCTCTCTAATTGATTCCCATGAAA
TGGACTTCATCAACTCTCCAATCACCTTCTCCGTCCCTTCTTGGAATACG
AAAACgtctttctttctcttttttttctcaacaaacttgaaaatctgttt
caaaaatgaaatattctTCTGAACATCTCCTGCTTTCAACAACAGATTAC
CAGTGCCATTAATGACTTTAGAATCCCCTTGGTATGATTTGAcaggaaaa
actttcaataaagTGTTAATATGTTCAGTTAGTTCTGGTGATTTTAAGTC
TGTTTCTTCTAGCAGGTATTTGATACACTGATTGGGCTTTTGAGAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047818-exon-scaffold_136-1491911889:308436..311439 | TCONS_00047818-exon-scaffold_136-1491911889:308436..311439 | Clytia hemisphaerica | exon |
| TCONS_00047818-exon-scaffold_136-1510915933:308436..311439 | TCONS_00047818-exon-scaffold_136-1510915933:308436..311439 | Clytia hemisphaerica | exon |
| TCONS_00047818-exon-scaffold_136-1575043694:308436..311439 | TCONS_00047818-exon-scaffold_136-1575043694:308436..311439 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_136 | supercontig | scaffold_136:308436..311439 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011989 | ARM-like |
Blast
The following BLAST results are available for this feature:
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