TCONS_00046981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046981
Unique NameTCONS_00046981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3097

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046981 ID=TCONS_00046981|Name=TCONS_00046981|organism=Clytia hemisphaerica|type=transcript|length=3097bp
TTGGTATTGAACATCTTGTCATTATAGAGATGCTGGCGACACAAGGGTGC
AtgaactgaataaaaagattCGCGCCAATGACGAGTAAGCCCCTGAAATT
ATCACAACATTATTGACCTTGAACTTCTTGTCATTATAGAGATGCTAGAG
ACAAAGTTAAACGGACTAAACAAAAAACTTCGCGCCAAAAACGAGATGCT
AGAGACGAAGTTAAACGAACTAAACGAAAAACTTCGCGCCAAAAACGAGA
TGCTAGAGACAAAGTTAAACGAACTAAACATAAAACTTCGCGCCAAAAAC
GAGATGCTAGAGACAAAGTTAAACGaactaaacaaaaaaacttCACACCA
AAAACGATTAAGTCCCTGAAATTCGCACAACATTGAACTTCTTGTCATTA
TAGAGATGCTAGCGACACGGGTGCATGAGATTAATAAAAAACTTCGCGCC
AAAAACGAGTAAGTCCCTGAAATTCTCACGACAAATGTCATTCAACAATT
ACTACAATACGGGTGTAGTTTTGCGGcttaaaaattgatttatgTGCTTC
TTTCCCAAACAATCAAAATATAGGACGGAAATTCAAAtcagatgaagaag
aaaatcaatgtTAAAGTCAGATTCTAAATATTTCAATGCGACCCTAATAA
ACCATATCAAAAGGTAACAGCTCGCTGGAAAGATGTTTCCGAGTGGATGA
ATTGAGCAGAATTTCCTGCTATAgagatttttcttaaaacaacTCTTTTA
GGATCAGGCGTATTGAAAGTGCTATCTAGCCTCATGTCAAGGACAATAAA
GATTCTATGGGAAtggtgttttttattttcagtgcACTGGAGGGTATGGA
CGAAGTGAAAGAAACGATAAGATTTGTTCTGAAAGTAGTAAATAGTAATT
TGGCTTTTAAAAGGGGGGTTGATATGATATGGATTGAATTGGAGAGCAGT
TTTTCTtgggaaaaatttttccaaaagcaagaaaaaaacaaatttgtgat
TTCAATTTAATATTGCCTTTTAGAGCTTCCGATGAAAACTCCGAAAAGAC
ATCCCTCGTAAACGTGAACTTGTGGCAAAGCTCTCCAAAGAAAAGGCTTT
TGGTACAAGTATGATAGATGAACATGATCTTCATAGAAGGACTCTGTGCA
AACATTCTATCACAAGACTTCACATAATGACGTTGTTAAGcttataaaat
ctttattaTTAATCGGAAAAATTACGTTGCGGTTGGTTGGCCTAACcaac
attttctgaaaatggtcaaagacTTTGCATGTCCATTATTAGATTTGACT
CAGACTCTTAGTGAGAAAAACAATCGTTTATTAATTAACTTTTTAACTTC
TTTATCTAGCATGAGGCTCTAAAATTTCAGCTTAGAGCAGACGTTGATGC
AACTTGATCTTCtacatttttttagttttctccATATAAACACTCTTGTT
CTAAGTTCTAAGATTTCACTTTCATTATTTTGACTGTTACTACGAAGGTG
GAGCCAATGAATTTCTAATTATTACCATTTTACTTTAAATGGAAAATTTA
TTACAACGAGAAATACTCAATCAAATCGATCAAaacttttattcaaaatt
ctattttttagCCTGAAAACACAGCCCCAATCGTCGAGGAGGCGGAAAAT
GAAGAACTCAGAGAGCAGATTGATCAAGCAATCATTGATCTTCAAATTGA
GAATGATAAATAATACGAACAAGAAGAAGTAGGACAGGGGGGGGTaccaa
gtcagtgtactggaccatagggtacgggtactaacttgatttttggattt
gttttccaaaaaattagaccaccaccctactaactttttttcatggtcgg
ggctttgacaccacccttttagtacactgtactaactttttttcacggtc
ggggctttgacaccacccttttagtacactgtactaactttttttcacgg
tcggggctttgacaccacccttttattacactgtactaactttttttcac
agccggagctttgataccaccctttGAGTACACTGTACTGATGTTTTTCC
ACAACTAGATTTTTATTAccaccctttcagtacactgtaGTGACTTCTCC
ATGACCGGATttttgataccacccttttagtacactgtattAGCTGTTTT
TTCGATCAGATGATTTTAGAAACCACCCTTTATAGTGCACTGTTCTAATT
TCTTTTTGGCCAGATAAGTTTAATTGCCACCACttcaggtaagtgaccta
ccggatgtgcggcccttaagggtaggtttttggactttggaaagtgcact
gtaagggttgatttgtgagaaagtgggaaaaagtgcactgtaagggtgta
aaattttataaaaaaattcgaaaaattacactataagggtcgattttcag
ccaaatttttcctgcactgcaAGGGAccaattttagagacctgatttttg
ccCGAACGTGTGCAGTCGTTTTCACCCCTCCCCCCGGTGATTTCActtat
atacagatttttttcaattaacaaTCCAACAAGGTTactaaaaaacataa
aacaatagagcgggtttgtttttataaaacttgaAAGCTTCGATTCGAAC
GTTTACACATTTCAAATTCTTGTTGTTGCCATAATGAGATAgggccttaa
agaaaacataaacaaGATTggacttaaggccggtctccaatTGCGCATGC
TGCAACTctgaaacaaatccaatcaagtAAACAGGAAACATTGGGAGAAA
ATCAGTGTACAATTTGTATAGCTTAACCAGCCTTGACTTGAAGGTCTCGT
GACCAGCTTGGACCAAATTAGGGCAAATATACATGGGAATTCACTGGGTT
TGTGTTTGTACCACTGAAATTAGTACAATGTACTAACTTCTCAGTGTGTA
TCAATTCAgaacaccaccctttttagtacagtgtactaactttttcattg
tatttttcacagaggaccacccttttagtacactgtactaactttttcat
tgtatttttctcagaggaccacccttgtacactgtactaactcaatttaa
cctaaaaaatgcacccaccagctatgggccagtacactgactcgATA
Run BLAST on NCBI

transcript from alignment at scaffold_119:74254..78552-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046981 ID=TCONS_00046981|Name=TCONS_00046981|organism=Clytia hemisphaerica|type=transcript|length=4299bp|location=Sequence derived from alignment at scaffold_119:74254..78552- (Clytia hemisphaerica)
TTGGTATTGAACATCTTGTCATTATAGAGATGCTGGCGACACAAGGGTGC
ATGAACTGAATAAAAAGATTCGCGCCAATGACGAGTAAGCCCCTGAAATT
ATCACAACATATGGTCCGACAGAGGCACGAAGAGAGAAGGTTTTCGGATC
AGCTGCAAGAGAAATGAAAATGTAGACCAAACAAGCAACATGCTGAATGG
ACCTACCTGTTGATCAAAATCAGATAAAAAAGGACAAATATCAACAGAGT
AAGAAAGTGTAGGAAGCAGCTTAGATTACCATGAGATTAACTGTGAAGTA
TAGTTAAGGTGGTATGACTTATAATCGTAGATACTGGAGTGAATAAATAT
TTTGCCGTGGTTTCCCTATTGACGATAAAGAGTGATTTTCACCAAAGTCC
GAAAAAACCCATTTTAGTTTCTGGCCCAAATTTGCCCATTTTATATCACT
ATGCAAAAAACAAGAGAAAATACCAAGCCGATCACGAAAAATGCTCAATT
TCCCTAAATATGACAAAAGGGAATTTCCCTAAATAAGAAAACCTGATTCT
TACGGCCAAAAAAAATTTCCAGAAAAAATAACTTGAGCCACTTTTTGGAG
AACCTTAATTTCTATCTTGCCTAAAAAATTAGAAAAAATCTAACGAAGCA
AATGCACACAAAGTAAAAAAAAAACCCATTTTTAGACACATTGGCCCAAA
TTTGCCCAAAAAAATTATTATTTGAAAATTGGGCTTCAGATTTTAAATAT
TACCATTTCACATCAAAGTGTTAAAAATCAGAAAAAATATCAATCCAATC
GCAAGAAATGCAAGAAATGATCTCTTTTCCCTAAAAATGACATATGGGAA
TTTCCCCAAATAAGAAAATCCGATTTTTAGCCCAAATTTGCCCCAAATTT
TATTTTTCGAAAATCGGGCCTCGTCACTTTTTGGGAATCACCATTTTGCA
TCACTGTGCAAAAAATCGAAAAAAATAATGAGCCGATCCTGAGAAAAGCT
TGTAACAGACGAACGGAAAACGGTCAAATTGAAGGACGGCAGGTCCAAAA
AGTCAAAGAAGATCCTTGGAATTCTCACAACATTATTGATCTTAAACTTC
TTGTCTCTATAGAGATGCTGGCGACACAAGGGTGCACGAACTGAATAAAA
AGATTCGCGCCAATGACGAGTAAGTCCCTGAAATTCTCACAACATATGGT
CCGACAGAGGCACGAAGAGAGAAGGTTTTCGGATCAGCTGCAAGAAAGAT
TTTGCGAAAATGAAGACCAAAAAAAATCAAAGACGAGTGAGTCCCTGGAA
TTCGCACAACATTATTGACCTTGAACTTCTTGTCATTATAGAGATGCTAG
AGACAAAGTTAAACGGACTAAACAAAAAACTTCGCGCCAAAAACGAGATG
CTAGAGACGAAGTTAAACGAACTAAACGAAAAACTTCGCGCCAAAAACGA
GATGCTAGAGACAAAGTTAAACGAACTAAACATAAAACTTCGCGCCAAAA
ACGAGATGCTAGAGACAAAGTTAAACGAACTAAACAAAAAAACTTCACAC
CAAAAACGATTAAGTCCCTGAAATTCGCACAACATTGAACTTCTTGTCAT
TATAGAGATGCTAGCGACACGGGTGCATGAGATTAATAAAAAACTTCGCG
CCAAAAACGAGTAAGTCCCTGAAATTCTCACGACAAATGTCATTCAACAA
TTACTACAATACGGGTGTAGTTTTGCGGCTTAAAAATTGATTTATGTGCT
TCTTTCCCAAACAATCAAAATATAGGACGGAAATTCAAATCAGATGAAGA
AGAAAATCAATGTTAAAGTCAGATTCTAAATATTTCAATGCGACCCTAAT
AAACCATATCAAAAGGTAACAGCTCGCTGGAAAGATGTTTCCGAGTGGAT
GAATTGAGCAGAATTTCCTGCTATAGAGATTTTTCTTAAAACAACTCTTT
TAGGATCAGGCGTATTGAAAGTGCTATCTAGCCTCATGTCAAGGACAATA
AAGATTCTATGGGAATGGTGTTTTTTATTTTCAGTGCACTGGAGGGTATG
GACGAAGTGAAAGAAACGATAAGATTTGTTCTGAAAGTAGTAAATAGTAA
TTTGGCTTTTAAAAGGGGGGTTGATATGATATGGATTGAATTGGAGAGCA
GTTTTTCTTGGGAAAAATTTTTCCAAAAGCAAGAAAAAAACAAATTTGTG
ATTTCAATTTAATATTGCCTTTTAGAGCTTCCGATGAAAACTCCGAAAAG
ACATCCCTCGTAAACGTGAACTTGTGGCAAAGCTCTCCAAAGAAAAGGCT
TTTGGTACAAGTATGATAGATGAACATGATCTTCATAGAAGGACTCTGTG
CAAACATTCTATCACAAGACTTCACATAATGACGTTGTTAAGCTTATAAA
ATCTTTATTATTAATCGGAAAAATTACGTTGCGGTTGGTTGGCCTAACCA
ACATTTTCTGAAAATGGTCAAAGACTTTGCATGTCCATTATTAGATTTGA
CTCAGACTCTTAGTGAGAAAAACAATCGTTTATTAATTAACTTTTTAACT
TCTTTATCTAGCATGAGGCTCTAAAATTTCAGCTTAGAGCAGACGTTGAT
GCAACTTGATCTTCTACATTTTTTTAGTTTTCTCCATATAAACACTCTTG
TTCTAAGTTCTAAGATTTCACTTTCATTATTTTGACTGTTACTACGAAGG
TGGAGCCAATGAATTTCTAATTATTACCATTTTACTTTAAATGGAAAATT
TATTACAACGAGAAATACTCAATCAAATCGATCAAAACTTTTATTCAAAA
TTCTATTTTTTAGCCTGAAAACACAGCCCCAATCGTCGAGGAGGCGGAAA
ATGAAGAACTCAGAGAGCAGATTGATCAAGCAATCATTGATCTTCAAATT
GAGAATGATAAATAATACGAACAAGAAGAAGTAGGACAGGGGGGGGTACC
AAGTCAGTGTACTGGACCATAGGGTACGGGTACTAACTTGATTTTTGGAT
TTGTTTTCCAAAAAATTAGACCACCACCCTACTAACTTTTTTTCATGGTC
GGGGCTTTGACACCACCCTTTTAGTACACTGTACTAACTTTTTTTCACGG
TCGGGGCTTTGACACCACCCTTTTAGTACACTGTACTAACTTTTTTTCAC
GGTCGGGGCTTTGACACCACCCTTTTATTACACTGTACTAACTTTTTTTC
ACAGCCGGAGCTTTGATACCACCCTTTGAGTACACTGTACTGATGTTTTT
CCACAACTAGATTTTTATTACCACCCTTTCAGTACACTGTAGTGACTTCT
CCATGACCGGATTTTTGATACCACCCTTTTAGTACACTGTATTAGCTGTT
TTTTCGATCAGATGATTTTAGAAACCACCCTTTATAGTGCACTGTTCTAA
TTTCTTTTTGGCCAGATAAGTTTAATTGCCACCACTTCAGGTAAGTGACC
TACCGGATGTGCGGCCCTTAAGGGTAGGTTTTTGGACTTTGGAAAGTGCA
CTGTAAGGGTTGATTTGTGAGAAAGTGGGAAAAAGTGCACTGTAAGGGTG
TAAAATTTTATAAAAAAATTCGAAAAATTACACTATAAGGGTCGATTTTC
AGCCAAATTTTTCCTGCACTGCAAGGGACCAATTTTAGAGACCTGATTTT
TGCCCGAACGTGTGCAGTCGTTTTCACCCCTCCCCCCGGTGATTTCACTT
ATATACAGATTTTTTTCAATTAACAATCCAACAAGGTTACTAAAAAACAT
AAAACAATAGAGCGGGTTTGTTTTTATAAAACTTGAAAGCTTCGATTCGA
ACGTTTACACATTTCAAATTCTTGTTGTTGCCATAATGAGATAGGGCCTT
AAAGAAAACATAAACAAGATTGGACTTAAGGCCGGTCTCCAATTGCGCAT
GCTGCAACTCTGAAACAAATCCAATCAAGTAAACAGGAAACATTGGGAGA
AAATCAGTGTACAATTTGTATAGCTTAACCAGCCTTGACTTGAAGGTCTC
GTGACCAGCTTGGACCAAATTAGGGCAAATATACATGGGAATTCACTGGG
TTTGTGTTTGTACCACTGAAATTAGTACAATGTACTAACTTCTCAGTGTG
TATCAATTCAGAACACCACCCTTTTTAGTACAGTGTACTAACTTTTTCAT
TGTATTTTTCACAGAGGACCACCCTTTTAGTACACTGTACTAACTTTTTC
ATTGTATTTTTCTCAGAGGACCACCCTTGTACACTGTACTAACTCAATTT
AACCTAAAAAATGCACCCACCAGCTATGGGCCAGTACACTGACTCGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029972XLOC_029972Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046981-exon-scaffold_119-1575043694:78445..78552TCONS_00046981-exon-scaffold_119-1575043694:78445..78552Clytia hemisphaericaexon
TCONS_00046981-exon-scaffold_119-1575043694:74254..77242TCONS_00046981-exon-scaffold_119-1575043694:74254..77242Clytia hemisphaericaexon
TCONS_00046981-exon-scaffold_119-1510915933:78445..78552TCONS_00046981-exon-scaffold_119-1510915933:78445..78552Clytia hemisphaericaexon
TCONS_00046981-exon-scaffold_119-1510915933:74254..77242TCONS_00046981-exon-scaffold_119-1510915933:74254..77242Clytia hemisphaericaexon
TCONS_00046981-exon-scaffold_119-1491911889:78445..78552TCONS_00046981-exon-scaffold_119-1491911889:78445..78552Clytia hemisphaericaexon
TCONS_00046981-exon-scaffold_119-1491911889:74254..77242TCONS_00046981-exon-scaffold_119-1491911889:74254..77242Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_119supercontigscaffold_119:74254..78552 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	4.43746e-07	0	0	1.40831	1.21597	0.73285	0.678907	0	3.34671e-05	0	0.0479719	0	0	0	0.142831	0.158449	0	0	0	0.388662	0.380566	0.299416	0	0.293708	0.593957	2.30367e-05	0.781689	1.91968e-05	0.737005
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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