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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047016 ID=TCONS_00047016|Name=TCONS_00047016|organism=Clytia hemisphaerica|type=transcript|length=3925bpRun BLAST on NCBI protein sequence of TCONS_00047016-protein >TCONS_00047016-protein ID=TCONS_00047016-protein|Name=TCONS_00047016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1259bp MTSSTATCQFLQIGDCISLYAEGGVSGFLSTLGLVDDRVVVEPDAGNLKNRun BLAST on NCBI transcript from alignment at scaffold_120:52756..79568- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047016 ID=TCONS_00047016|Name=TCONS_00047016|organism=Clytia hemisphaerica|type=transcript|length=26813bp|location=Sequence derived from alignment at scaffold_120:52756..79568- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_120:52756..79568- >TCONS_00047016 ID=TCONS_00047016|Name=TCONS_00047016|organism=Clytia hemisphaerica|type=CDS|length=102060bp|location=Sequence derived from alignment at scaffold_120:52756..79568- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047016 vs. Swiss-Prot (Human)
Match: ITPR1 (Inositol 1,4,5-trisphosphate receptor type 1 OS=Homo sapiens GN=ITPR1 PE=1 SV=3) HSP 1 Score: 1326.23 bits (3431), Expect = 0.000e+0 Identity = 714/1311 (54.46%), Postives = 903/1311 (68.88%), Query Frame = 2
Query: 143 FLQIGDCISLYAEGGVSGFLSTLGLVDDRVVVEPDAGNLKNPPNKFRDCLFKVCPMNRYSAQNQFWKSAKPTLSSTSDTVLLKKLHHAAELEKKQNEEENRKSIGEIVKYGGTIQLLHPKSNKYLTVNKRLPALLEKNAMRVSLDNEGNEGSWFFISPYYKLRSSGDNVVIGDKVILNPVSAAQPLHASKFELPDKPGSREINSINCNTCWKINLFLDHLENDPDVLKGGDVVRLFHAEQEKFLTHDDYQKKSHVFLXXXXXXXXXXXXXXKALWVVEVVQHDPCLSGAARWNSLFRFKHLATGRYLAAEVDE-------------SQHKDSNRLKLRGTGQ--VYHLTCVSNPNDLATIFELDPTSAQRVDDMVPKSSYTRLKHLCTGTWVHSTSIPIDVSEDRPVMHKVGSAQIKEDKEAFAIIQVQADEVRDLDFVSDASKALSIFCQKMEEGIISQIERRALTQLLADLNLFVLKKDMTMTKQDVLSISVDETDRERQKLIREQNILKKIFQLLRAPFLDKGEGGPLLKIDEIGEQRNAPIRHILRLSYRLLRNSTRDYRKNQEYVAKQFGFMQSQIGYDLLAEETITDLVHNNRKLLEKHITAKEIDTFVLLVRKRKDCRFLDYLSDLCVSNNTAIPAMQELICKAVLNANNSDLLIETRM----------------------HHGEVHLFW-DGGTQMKPQ--RLLARDAKIGQREDINLLNYYKYQLHLFAQMCLDRQYLAINTISKQLDIELMIRCIADEGLPCSLRAAFCRLMVHMHIDRDPQEKVSPVRYARLWSKIPTRNTVEEYDNHLREEQGDGKTSKVTVSQFKPTMNFVENYLHNIAVSHGMGFMDPDQNKLTYEVVQVAYHLIHFGFYGFKDLLRLTKMLLVILDS------------EEGKSYSMNPACDLTSHASVTDTLHAVGSALTHVALGMEAESWQAPTNQQKQTVSFEVLP-TMVGVGKQXXXXXXXXXXXXLTVMNTKLKVIEILEYIMDVRLDYRMSSLLTIFKKDFNE-----------NXXXXXXXXXXXXXXXXHISAEAEKMFETSIDGYIDLDLDNQGGKMFLRVLLNLSMAEYKPLVSGVLKLLFRHFSQRKEVLQAFKQVQLLVSNEDVQNYQQIKKDLDELRLKVEKSELWVYTGRSSSPIPALRSLRKRQSKLPENVQEVSDDVKKEIRMSESSSNQDDTASIVDSGYDNKQKLMSKLSGESFEQENE--HNLMEGLSSKNWENYKIVLKILQRLCDLCL--TADGKRNRKHEQRLLRNMGAHNVVLDLLGIPYEKV 3871
FL IGD SLYAEG +GF+STLGLVDDR VV+P+ G+L NPP KFRDCLFK+CPMNRYSAQ QFWK+AKP +ST+D VLL KLHHAA+LEKKQNE ENRK +G +++YG IQLLH KSNKYLTVNKRLPALLEKNAMRV+LD GNEGSWF+I P+YKLRS GD+VVIGDKV+LNPV+A QPLHAS +L D PG E+NS+NCNT WKI LF+ +N D+LKGGDVVRLFHAEQEKFLT D+++KK HVFLRTT R SATSATSSKALW VEVVQHDPC GA WNSLFRFKHLATG YLAAEVD +D++R +LR + VY L V ND+++IFELDPT+ + D +VP++SY RL+HLCT TWVHST+IPID E++PVM K+G++ +KEDKEAFAI+ V EVRDLDF +DASK L K+E+G I+Q ERR++T+LL DL FV T + QDVL + + +RERQKL+REQNILK+IF+LL+APF D G+ GP+L+++E+G+QR+AP RHI RL YR+LR+S +DYRKNQEY+AKQFGFMQ QIGYD+LAE+TIT L+HNNRKLLEKHITA EIDTFV LVRK ++ RFLDYLSDLCVS N +IP QELICKAVLN N+D+LIET++ EV LFW D +++ + R LA+DAK GQ+ED ++L+YY+YQL+LFA+MCLDRQYLAIN IS QLD++L++RC++DE LP LRA+FCRLM+HMH+DRDPQE+V+PV+YARLWS+IP+ +++YD+ G + +F TM FVE YL ++ V F D ++NKLT+EVV +A +LI+FGFY F DLLRLTK+LL ILD +G+ N + ++V ++H VG +T V L LP T + + + P + VM+TKLK+IEIL++I++VRLDYR+S LL IFK++F+E N + + G +D +HI +AE +F S + LDLD+ GG+ FLRVLL+L+M +Y PLVSG L+LLFRHFSQR+EVLQAFKQVQLLV+++DV NY+QIK+DLD+LR VEKSELWVY G+ D+T M SGE+ ++ E +N + S + NY++V +IL RL LC+ +A +++RK +QRLLRNMGAH VVL+LL IPYEK
Sbjct: 8 FLHIGDICSLYAEGSTNGFISTLGLVDDRCVVQPETGDLNNPPKKFRDCLFKLCPMNRYSAQKQFWKAAKPGANSTTDAVLLNKLHHAADLEKKQNETENRKLLGTVIQYGNVIQLLHLKSNKYLTVNKRLPALLEKNAMRVTLDEAGNEGSWFYIQPFYKLRSIGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGCNEVNSVNCNTSWKIVLFMKWSDNKDDILKGGDVVRLFHAEQEKFLTCDEHRKKQHVFLRTTGRQSATSATSSKALWEVEVVQHDPCRGGAGYWNSLFRFKHLATGHYLAAEVDPDFEEECLEFQPSVDPDQDASRSRLRNAQEKMVYSLVSVPEGNDISSIFELDPTTLRGGDSLVPRNSYVRLRHLCTNTWVHSTNIPIDKEEEKPVMLKIGTSPVKEDKEAFAIVPVSPAEVRDLDFANDASKVLGSIAGKLEKGTITQNERRSVTKLLEDLVYFVTGG--TNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTDCGD-GPMLRLEELGDQRHAPFRHICRLCYRVLRHSQQDYRKNQEYIAKQFGFMQKQIGYDVLAEDTITALLHNNRKLLEKHITAAEIDTFVSLVRKNREPRFLDYLSDLCVSMNKSIPVTQELICKAVLNPTNADILIETKLVLSRFEFEGVSSTGENALEAGEDEEEVWLFWRDSNKEIRSKSVRELAQDAKEGQKEDRDVLSYYRYQLNLFARMCLDRQYLAINEISGQLDVDLILRCMSDENLPYDLRASFCRLMLHMHVDRDPQEQVTPVKYARLWSEIPSEIAIDDYDS-------SGASKDEIKERFAQTMEFVEEYLRDV-VCQRFPFSDKEKNKLTFEVVNLARNLIYFGFYNFSDLLRLTKILLAILDCVHVTTIFPISKMAKGEENKGNNDVEKLKSSNVMRSIHGVGELMTQVVLRGGG-----------------FLPMTPMAAAPEGNVKQAEPEKEDIMVMDTKLKIIEILQFILNVRLDYRISCLLCIFKREFDESNSQTSETSSGNSSQEGPSNVPGALDFEHIEEQAEGIFGGSEEN-TPLDLDDHGGRTFLRVLLHLTMHDYPPLVSGALQLLFRHFSQRQEVLQAFKQVQLLVTSQDVDNYKQIKQDLDQLRSIVEKSELWVYKGQGP----------------------------------------DET--------------MDGASGENEHKKTEEGNNKPQKHESTSSYNYRVVKEILIRLSKLCVQESASVRKSRKQQQRLLRNMGAHAVVLELLQIPYEKA 1235 The following BLAST results are available for this feature:
BLAST of TCONS_00047016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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