TCONS_00047005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047005
Unique NameTCONS_00047005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047005 ID=TCONS_00047005|Name=TCONS_00047005|organism=Clytia hemisphaerica|type=transcript|length=2709bp
CTAAATTATCGTAACAAGGTGAGTGaggccattttttcaaaacaaacaaa
atttcaaaaaatatttaaaaagaaaagactCAGCAGGGGACCTGATCACA
AAAAGATAATGGGGACTGAAATGCCAGAGATCCAGATCAATGAAGTCCTT
TTGGAGATTGATGAGGAGGAGCCAGAGCTGATTGAGATGATGGTTTCCAC
CACATCAAATGATGAAATTATCCATGTCCtgttaaaatcatttttatctg
aaaaagacACTAAGGATTTGCGAAAAGAGATAAAAGAAGTtaagattgaa
aaaaaactaacagGAAAGCAAATCAAAAAGaacatttatttgttattcaa
taTCAAAAGAGAATTTGTGATAAAGTTACGTAACAGCAACAAATCCCTGG
TTCCATTCAGTAATACTATCAAGCCTAACACAGCAGACAAtCCATACATA
CTTGAAGTATTTTACCAATATCAAACAGTGACGCCTTTACCAAGAACAGT
CAGCGTAGCAACTTATGAACagcttttaaaaagaaaaatgaatagcACTT
CAAATCGATTGGCAAAACTTGAAGACTTTATTCCAGACCTTCCAAAGAaa
caagaaatcaaaatcaacgAAGAAATTAAAGACTTAAATGACAAAATGAA
TATATTGGAGCGAAAATTAAATGATGCTGATTCAACTCACTGGCAGGGAA
TGTTCGAGCGGGTGCCACTGTGGTGATATTGCTCCGAAAGATATAGTATT
CAAGGTGGAATAATATCAATACGGTTGTCATATTATTTGAAAAGGGATCT
CCCGTTTTCGAGGACAATCTCGATTTCGTGCAAATATATTTTGGTACCAC
ATAATTTTTGTTTGAGTTGTAAGCGTTACGACAACAACCTCGACTTCAAG
gactttcattttgttttgtttcttgttctaaattttttgtctttttcttt
tttttcatttccttaatttttttacctgtaaatattaaatttgtacattt
tcatttcaacattttctttttttcacgtTACATACGCAcattattaaaat
tttcaaaattttgaaatcctcATTAATTTTCTACTGTGTGAAATTTTTAT
GTCCGTaatggccctttttacgccgaccCCTTTTACGCCGCAGCctgatt
ttgggcttacgccaattagggccgtagaTAACGCCAAAGTTTGTTAGAAT
GGCTATTTATgcttcaatttacattaaaatatcatttttcagtagtaaac
cgttgaaaatcactgatttttgttaagttttaaatatggagtaaaacagt
ggataattttttatcttcgaatcagatctaaaatcctttaaatagagaaa
aatggtgaaaaattaacgccacttttaagtaaaatttgcaaaattttggc
tctttttacaccggcccttttaacgccggtCCTTATTACGCCAGGAGCCT
AAAAGtgacgccaataagggccggcgtaaaaaaggCGGATAAGGTActca
aattaatttttattcacattatatcaaattttattcCGTTATACATATTA
CGATATTATATCAAATTATATTCCGTTTTTTGCCGACAAATATCGTAAAT
TAGATTAAAGTTCCTTGACAATCGGACGGAATCGAAAATAAGTATATTTG
GATGGGTCACAGGCAAGAAACATGTTAAGTTTTAATAATGGAAAGGCGAT
CATTGAAGAGAAAATAAGTATTGTTTTCAGATACATTTCTTTTCGATATT
AATAAATAGCTACTATGTACATTATTCGGTATAATAATAGtttatttttt
cagcaaaaataaattttaaattgttgttgctatttttaaaaatagaaaat
gtcTTTTACGTTTCAATTTTAATGTCATTTCTCACTCTCTGCCCAATATT
TAAGCTCCAGCTTTATAGAGAATCCGGCTCCATTAGTTCACATAATACCC
ATAGGATAAAGTAAAGCAATATGGTTCCTGTAGCTTTGGTAAATTTGCGT
TGGATCTGCGTTGCAAAGACACTTTTCTACAATCGCATGTCTTTGCTTGT
GTGACACTCTAACTGTATATTTCAAAGGCCTCCGATCGAAATGCTTAAAT
GTTCTCCAGAGCAATTTCAATTGAACCGATTGTAGCCCATCTCACTGTGT
TACGTGCCGCAACTTTCAGTGTTCTCAAAACCATTATTGAATGAGTAATC
TCTTCATTTACAGTAATGGTTATTCTGTTCTTTCTCACACGTTTTACACT
TCACCTCACAACACCAAATCAACTTACAACCACATTTGGCTTTTACAATC
TCACGTCTCGAATAATAACCTCTGTCACAGCATAACATGTTACAATCGTT
CACCGAATTCCCTGTTTTGGTGCAAGATCGTCCTGCTACACCATACGACC
CAATAGATAATTTCTTTTCACAGTAACTTGGTGAATCTTTAATATAAACC
ATGTCTTTAGCTGAATACTTATTATAATTAGGGTTGGTTTCTACGAGCCT
GATTTCAgtatttttggaatttccaTCATCGTTTCCCTGCTTTAGTTCGA
CTTGTACAGATGACCTGTAGAGGTTTTCAAGATGTTTAGCAACCTTATTG
AAGCGACCAAGTTGTCGGTAGCAAGTATTGATAGCACAGTTTGTGGACAC
TCCGATACATCGGCATTGAACAAAGGATTTCTCGTAAACAGCCTGTAGAA
TGGAAGAAA
Run BLAST on NCBI

protein sequence of TCONS_00047005-protein

>TCONS_00047005-protein ID=TCONS_00047005-protein|Name=TCONS_00047005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
LNYRNKVSEAIFSKQTKFQKIFKKKRLSRGPDHKKIMGTEMPEIQINEVL
LEIDEEEPELIEMMVSTTSNDEIIHVLLKSFLSEKDTKDLRKEIKEVKIE
KKLTGKQIKKNIYLLFNIKREFVIKLRNSNKSLVPFSNTIKPNTADNPYI
LEVFYQYQTVTPLPRTVSVATYEQLLKRKMNSTSNRLAKLEDFIPDLPKK
QEIKINEEIKDLNDKMNILERKLNDADSTHWQGMFERVPLW
Run BLAST on NCBI

transcript from alignment at scaffold_120:222487..229932+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047005 ID=TCONS_00047005|Name=TCONS_00047005|organism=Clytia hemisphaerica|type=transcript|length=7446bp|location=Sequence derived from alignment at scaffold_120:222487..229932+ (Clytia hemisphaerica)
CTAAATTATCGTAACAAGGTGAGTGaggccattttttcaaaacaaacaaa
atttcaaaaaatatttaaaaagaaaagactCAGCAGGGGACCTGATCACA
AAAAGATAATGGGGACTGAAATGCCAGAGATCCAGATCAATGAAGTCCTT
TTGGAGATTGATGAGGAGGAGCCAGAGCTGATTGAGATGATGGTTTCCAC
CACATCAAATGATGAAATTATCCATGTCCtgttaaaatcatttttatctg
aaaaagacACTAAGGATTTGCGAAAAGGTATCCAACCATTgcattatttg
tttttattcagTAGTTATTTATTTTACAATGCTCAAACGCAAACCAAGAT
GGATATGTAGGCATTGCCTTAAGATAGTCTAAACTATTAAAaatacaatt
taaaaaaagcactactttttataaactttgttatcagcagaaaaataaaa
aagtaaataaatgaaaattgctgttttcggcaattatggccgttttttgg
aaataaaagttgattttattatctatttattttttctatctattatcagt
aggcccactgtgcctcgtttagttttgttttcaactggtttttgttggaa
atgcagatagcaaaatcgagtcatatgtaaacaataCAAATTTACAACAG
GGGTTTTGTTATCTCATTCTGGCTGTGTTTTGGCATGCAttgatgcagga
tcttttaacatattattttagaacttttcatgttattgagcaaccaaaat
ttgaaagaattatatacttttaaaaatctgaaaaacctttttcttctcca
tgcaattttactattttcaaatacctctgacatctttgcccttaaaagga
cgacacattttgctgattcagcatttcatcgttgaaaaaattgccatttt
cggcaataattgccaaaaagagcaataattgccgtttttatcttaaacac
ccaactggtTATGATTACTTGGGAAtcatataaataaataaacataaaaa
agaaCAGAATAATAATAAAGGCATTATCTTTGCTTTCTTACCTAGGGTGG
GAGATttgaagaaacaaagaaaactcATAGGTTCAGgttttggcctttaa
agagcctgggggctaaaattaccaaaatatttgggggcCTAGTTTGTTGG
GGGAGCctagatgatctgactgagactctgggggctgttcagctaaatta
aaaagatatcttatcttactattaaatcaaatataaaaagcaaaagactt
gtaaacataaatattaaaacaagtaaaatttagttttcatttatcagtac
tgtactGTGTtgggagaacaatgtttttgtttttgtttatcttaggacct
gaagtgttaggggacctagcacaaggcaattttttggagggagctaaatt
gttggggggGGGACCCTACTTTGTTGTGGGGAGCTAGAAACCTAACTGAA
GCTATGAAACTGTGAAAATTTACAGATGGATACCTTTAAAGTTGGTCTCA
CTAACGTCAACATCCCTCTACTAGCACTAAtaccgacacccttctttaga
gataggaataatatgaaggtcggaatcactaatagagaaaatatttttcc
ctcTCTGATTGCTAAACAACcgaaattattttcaatcagcgattctgacc
ttcctattttattcctatctttaaagggggtcgaaattagaagagggatg
tcgacattagaccaatttACGGTATAAAATAGAACATGTgttttaatttg
atatttttcattgatttattttcaGAGATAAAAGAAGTtaagattgaaaa
aaaactaacagGAAAGCAAATCAAAAAGGTGAGTTATACATGCTACCGTC
AACCGTAAGTtagtctaatatcgacatccctagtctaattccgacacacc
cttctttagagacaggaatatatgaaagcttgaatcattgattgaaaaag
gattattcctctctgaccactaagaaaaaaaacagtttcaacctttctat
caatttcagctgatttgggtgtcggaattagaggagggatgtcgacatta
gaccaagttacggtatgtaaaaaaactttctttctgaattaaaaaaaata
atttttcgaaaagtgttCAAACATAAGAGTTCACAAAATTCCcaagtttt
tggctttttcgTCAGAAAATCCACTACATTAAGCAAACTCCATAGATTTT
CAAGAGAGGTAATAATATCAATATTCAAACCAGGAAAACAAATTTAATCC
AAGTCTTTTTGGCATTCAATCTTGGCCATAAAAATTTATTGTCAAAATCT
TATGAAATTATAATAtcactttttcttttaagaacatttatttgttattc
aataTCAAAAGAGAATTTGTGATAAAGGtgagaaaatttaagaatataaa
TTAGGGTTGCTTATTATTGCAAACTTTGATTACTATATCCCCTCTTGTCA
TCCAGAAAAATCAAGTTCCCTCAAAATTGTGCTACAAGTATCAAATCTAA
TCCTTTCAAAATCCAAACCCTGACAAGTGTCCTTCTTTTTTAGTTACGTA
ACAGCAACAAATCCCTGGTTCCNACAAGTATCAGATCTAATCCTTTCAAA
ATCCAAACCCTGACAAGTGTCCTTCTTTTTTAGTTACGTAACAGCAACAA
ATCCCTGGTTCCATTCAGTAATACTATCAAGCCTAACACAGCAGACAAGT
GagtggttttttatttttttagtgcTGCTCAGGACTTTCTCATTTTTAGC
TACTACTGTACTGTATGTAGTTTcagttgaaaaataattttcaatttcac
ttttttttcagtCCATACATACTTGAAGTATTTTACCAATATCAAACAGG
TAAATGGTTAAGGAAAAGCTATTATTAAGTGAACAGCCAGTATTAAAAAG
TAAAGAGCCCACATCAACTTTTGATTTAAACTTCTCAAATGATGAAAGCC
CTAATTATGCTCTTAGCCATAAAAAGctaagatttagaaaaacattcaGT
GCTTTCTGTCTGATAACCATTTCAGTTGCATTTTGCTGGATCCAAAATTC
TTTATAAGGGCATTTTATAAAACTCATAGGGATTATCAAAGGGGTGGGAT
GGGAAGGTCATAGGGATGTAAATATTACAATCACTATATAAAAGTGGGTA
AACtgtttttatattcttttttcgttgacaataaaaaatctgatattctt
aacatttcgTTGTTTCAGTGACGCCTTTACCAAGAACAGTCAGCGTAGCA
ACTTATGAACagcttttaaaaagaaaaatgaatagcACTTCAAATCGAGT
ACGTCTATACTTTtgttatttcataaaaaaagtgCTCGATacttgtacat
gtttttttctttataagcattgcacttataagcatatctaggctcagata
tggggaaaaattaagcatatggcaaacattacttgagcctacgaaaaatg
tttttttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNccgggggggggttggaaaaaaatggaaaaattaacaagcggggg
ggcccgtttatttggcacctaagagtactagggttggcggatgaaAATCA
GGGGTATGtccggacgggacctccgaaaactgacccttagagagagtaat
ttttgccgaaaaggtacccttagagagactttttttgaaaaaactttctt
ccATTTTAGAAAGAaaccattttagattttttcgacccttagagagactt
tgaatggtgaaaaaaccgacccttaccatCTGTACATACCcatcactcat
ttttgcctaagtgcccccccccctcggggTCGCTAATGAAAACCATAAAT
AAGTTCGTATATTTTAATAATGTACATTGAAGAACAAGATTCTGAATAAT
AATCACTTCTGATTATTTTTATATTAGTTGGCAAAACTTGAAGACTTTAT
TCCAGACCTTCCAAAGAaacaagaaatcaaaatcaacgAAGAAATTAAAG
ACTTAAATGACAAAATGAATATATTGGAGCGAAAATTAAATGTGAGTTAC
CCTTTtcttaaaatgcattaaatgtaTTAAAAGCTCTAAACACTACTTAA
TTGTATACTGAATGCACTCTCAGGAAAACCAGAATTGTGTTTGTGCGAGA
ATGACGATTTCACTGCTCCCGCTTTAGTGGCTTCCATCCTaccagcctta
ttggaacatttttgagctttttgatCCCGAGATATAAAGTGCTAAGGTCT
TTTAGTTAAACCACTTAAAATATGTTCTAAGTTTTACAGAGGCAATTATC
TCTCGCCACTTTACAGAGCTTTGATTATGTTACACAATCTTTAATGGGTA
GAACTGTGCCCAACTACTGATGAAGGAGGTTTCGCagtctttattttcat
taatgtgcagtttaatgtttttataataACTCAAATAATGATTTTTCCAT
TACTCTTAGGATGCTGATTCAACTCACTGGCAGGGAATGTTCGAGCGGGT
GCCACTGTGGTGATATTGCTCCGAAAGATATAGTATTCAAGGTGGAATAA
TATCAATACGGTTGTCATATTATTTGAAAAGGGATCTCCCGTTTTCGAGG
ACAATCTCGATTTCGTGCAAATATATTTTGGTACCACATAATTTTTGTTT
GAGTTGTAAGCGTTACGACAACAACCTCGACTTCAAGgactttcattttg
ttttgtttcttgttctaaattttttgtctttttcttttttttcatttcct
taatttttttacctgtaaatattaaatttgtacattttcatttcaacatt
ttctttttttcacgtTACATACGCAcattattaaaattttcaaaattttg
aaatcctcATTAATTTTCTACTGTGTGAAATTTTTATGTCCGTaatggcc
ctttttacgccgaccCCTTTTACGCCGCAGCctgattttgggcttacgcc
aattagggccgtagaTAACGCCAAAGTTTGTTAGAATGGCTATTTATgct
tcaatttacattaaaatatcatttttcagtagtaaaccgttgaaaatcac
tgatttttgttaagttttaaatatggagtaaaacagtggataatttttta
tcttcgaatcagatctaaaatcctttaaatagagaaaaatggtgaaaaat
taacgccacttttaagtaaaatttgcaaaattttggctctttttacaccg
gcccttttaacgccggtCCTTATTACGCCAGGAGCCTAAAAGtgacgcca
ataagggccggcgtaaaaaaggCGGATAAGGTActcaaattaatttttat
tcacattatatcaaattttattcCGTTATACATATTACGATATTATATCA
AATTATATTCCGTTTTTTGCCGACAAATATCGTAAATTAGATTAAAGTTC
CTTGACAATCGGACGGAATCGAAAATAAGTATATTTGGATGGGTCACAGG
CAAGAAACATGTTAAGTTTTAATAATGGAAAGGCGATCATTGAAGAGAAA
ATAAGTATTGTTTTCAGATACATTTCTTTTCGATATTAATAAATAGCTAC
TATGTACATTATTCGGTATAATAATAGtttattttttcagcaaaaataaa
ttttaaattgttgttgctatttttaaaaatagaaaatgtcTTTTACGTTT
CAATTTTAATGTCATTTCTCACTCTCTGCCCAATATTTAAGCTCCAGCTT
TATAGAGAATCCGGCTCCATTAGTTCACATAATACCCATAGGATAAAGTA
AAGCAATATGGTTCCTGTAGCTTTGGTAAATTTGCGTTGGATCTGCGTTG
CAAAGACACTTTTCTACAATCGCATGTCTTTGCTTGTGTGACACTCTAAC
TGTATATTTCAAAGGCCTCCGATCGAAATGCTTAAATGTTCTCCAGAGCA
ATTTCAATTGAACCGATTGTAGCCCATCTCACTGTGTTACGTGCCGCAAC
TTTCAGTGTTCTCAAAACCATTATTGAATGAGTAATCTCTTCATTTACAG
TAATGGTTATTCTGTTCTTTCTCACACGTTTTACACTTCACCTCACAACA
CCAAATCAACTTACAACCACATTTGGCTTTTACAATCTCACGTCTCGAAT
AATAACCTCTGTCACAGCATAACATGTTACAATCGTTCACCGAATTCCCT
GTTTTGGTGCAAGATCGTCCTGCTACACCATACGACCCAATAGATAATTT
CTTTTCACAGTAACTTGGTGAATCTTTAATATAAACCATGTCTTTAGCTG
AATACTTATTATAATTAGGGTTGGTTTCTACGAGCCTGATTTCAgtattt
ttggaatttccaTCATCGTTTCCCTGCTTTAGTTCGACTTGTACAGATGA
CCTGTAGAGGTTTTCAAGATGTTTAGCAACCTTATTGAAGCGACCAAGTT
GTCGGTAGCAAGTATTGATAGCACAGTTTGTGGACACTCCGATACATCGG
CATTGAACAAAGGATTTCTCGTAAACAGCCTGTAGAATGGAAGAAA

Coding sequence (CDS) from alignment at scaffold_120:222487..229932+

>TCONS_00047005 ID=TCONS_00047005|Name=TCONS_00047005|organism=Clytia hemisphaerica|type=CDS|length=5808bp|location=Sequence derived from alignment at scaffold_120:222487..229932+ (Clytia hemisphaerica)
CTAAATTATCGTAACAAGGTGAGTGaggccattttttcaaaacaaacaaa
atttcaaaaaatatttaaaaagaaaagactCAGCAGGGGACCTGATCACA
AAAAGATAATGGGGACTGAAATGCCAGAGATCCAGATCAATGAAGTCCTT
TTGGAGATTGATGAGGAGGAGCCAGAGCTGATTGAGATGATGGTTTCCAC
CACATCAAATGATGAAATTATCCATGTCCtgttaaaatcatttttatctg
aaaaagacACTAAGGATTTGCGAAAAGAGATAAAAGAAGTtaagattgaa
aaaaaactaacagGAAAGCAAATCAAAAAGaacatttatttgttattcaa
taTCAAAAGAGAATTTGTGATAAAGTTACGTAACAGCAACAAATCCCTGG
TTCCATTCAGTAATACTATCAAGCCTAACACAGCAGACAAtCCATACATA
CTTGAAGTATTTTACCAATATCAAACAGTGACGCCTTTACCAAGAACAGT
CAGCGTAGCAACTTATGAACagcttttaaaaagaaaaatgaatagcACTT
CAAATCGATTGGCAAAACTTGAAGACTTTATTCCAGACCTTCCAAAGAaa
caagaaatcaaaatcaacgAAGAAATTAAAGACTTAAATGACAAAATGAA
TATATTGGAGCGAAAATTAAATGATGCTGATTCAACTCACTGGCAGGGAA
TGTTCGAGCGGGTGCCACTGTGGTGACTAAATTATCGTAACAAGGTGAGT
Gaggccattttttcaaaacaaacaaaatttcaaaaaatatttaaaaagaa
aagactCAGCAGGGGACCTGATCACAAAAAGATAATGGGGACTGAAATGC
CAGAGATCCAGATCAATGAAGTCCTTTTGGAGATTGATGAGGAGGAGCCA
GAGCTGATTGAGATGATGGTTTCCACCACATCAAATGATGAAATTATCCA
TGTCCtgttaaaatcatttttatctgaaaaagacACTAAGGATTTGCGAA
AAGAGATAAAAGAAGTtaagattgaaaaaaaactaacagGAAAGCAAATC
AAAAAGaacatttatttgttattcaataTCAAAAGAGAATTTGTGATAAA
GTTACGTAACAGCAACAAATCCCTGGTTCCATTCAGTAATACTATCAAGC
CTAACACAGCAGACAAtCCATACATACTTGAAGTATTTTACCAATATCAA
ACAGTGACGCCTTTACCAAGAACAGTCAGCGTAGCAACTTATGAACagct
tttaaaaagaaaaatgaatagcACTTCAAATCGATTGGCAAAACTTGAAG
ACTTTATTCCAGACCTTCCAAAGAaacaagaaatcaaaatcaacgAAGAA
ATTAAAGACTTAAATGACAAAATGAATATATTGGAGCGAAAATTAAATGA
TGCTGATTCAACTCACTGGCAGGGAATGTTCGAGCGGGTGCCACTGTGGT
GACTAAATTATCGTAACAAGGTGAGTGaggccattttttcaaaacaaaca
aaatttcaaaaaatatttaaaaagaaaagactCAGCAGGGGACCTGATCA
CAAAAAGATAATGGGGACTGAAATGCCAGAGATCCAGATCAATGAAGTCC
TTTTGGAGATTGATGAGGAGGAGCCAGAGCTGATTGAGATGATGGTTTCC
ACCACATCAAATGATGAAATTATCCATGTCCtgttaaaatcatttttatc
tgaaaaagacACTAAGGATTTGCGAAAAGAGATAAAAGAAGTtaagattg
aaaaaaaactaacagGAAAGCAAATCAAAAAGaacatttatttgttattc
aataTCAAAAGAGAATTTGTGATAAAGTTACGTAACAGCAACAAATCCCT
GGTTCCATTCAGTAATACTATCAAGCCTAACACAGCAGACAAtCCATACA
TACTTGAAGTATTTTACCAATATCAAACAGTGACGCCTTTACCAAGAACA
GTCAGCGTAGCAACTTATGAACagcttttaaaaagaaaaatgaatagcAC
TTCAAATCGATTGGCAAAACTTGAAGACTTTATTCCAGACCTTCCAAAGA
aacaagaaatcaaaatcaacgAAGAAATTAAAGACTTAAATGACAAAATG
AATATATTGGAGCGAAAATTAAATGATGCTGATTCAACTCACTGGCAGGG
AATGTTCGAGCGGGTGCCACTGTGGTGACTAAATTATCGTAACAAGGTGA
GTGaggccattttttcaaaacaaacaaaatttcaaaaaatatttaaaaag
aaaagactCAGCAGGGGACCTGATCACAAAAAGATAATGGGGACTGAAAT
GCCAGAGATCCAGATCAATGAAGTCCTTTTGGAGATTGATGAGGAGGAGC
CAGAGCTGATTGAGATGATGGTTTCCACCACATCAAATGATGAAATTATC
CATGTCCtgttaaaatcatttttatctgaaaaagacACTAAGGATTTGCG
AAAAGAGATAAAAGAAGTtaagattgaaaaaaaactaacagGAAAGCAAA
TCAAAAAGaacatttatttgttattcaataTCAAAAGAGAATTTGTGATA
AAGTTACGTAACAGCAACAAATCCCTGGTTCCATTCAGTAATACTATCAA
GCCTAACACAGCAGACAAtCCATACATACTTGAAGTATTTTACCAATATC
AAACAGTGACGCCTTTACCAAGAACAGTCAGCGTAGCAACTTATGAACag
cttttaaaaagaaaaatgaatagcACTTCAAATCGATTGGCAAAACTTGA
AGACTTTATTCCAGACCTTCCAAAGAaacaagaaatcaaaatcaacgAAG
AAATTAAAGACTTAAATGACAAAATGAATATATTGGAGCGAAAATTAAAT
GATGCTGATTCAACTCACTGGCAGGGAATGTTCGAGCGGGTGCCACTGTG
GTGACTAAATTATCGTAACAAGGTGAGTGaggccattttttcaaaacaaa
caaaatttcaaaaaatatttaaaaagaaaagactCAGCAGGGGACCTGAT
CACAAAAAGATAATGGGGACTGAAATGCCAGAGATCCAGATCAATGAAGT
CCTTTTGGAGATTGATGAGGAGGAGCCAGAGCTGATTGAGATGATGGTTT
CCACCACATCAAATGATGAAATTATCCATGTCCtgttaaaatcattttta
tctgaaaaagacACTAAGGATTTGCGAAAAGAGATAAAAGAAGTtaagat
tgaaaaaaaactaacagGAAAGCAAATCAAAAAGaacatttatttgttat
tcaataTCAAAAGAGAATTTGTGATAAAGTTACGTAACAGCAACAAATCC
CTGGTTCCATTCAGTAATACTATCAAGCCTAACACAGCAGACAAtCCATA
CATACTTGAAGTATTTTACCAATATCAAACAGTGACGCCTTTACCAAGAA
CAGTCAGCGTAGCAACTTATGAACagcttttaaaaagaaaaatgaatagc
ACTTCAAATCGATTGGCAAAACTTGAAGACTTTATTCCAGACCTTCCAAA
GAaacaagaaatcaaaatcaacgAAGAAATTAAAGACTTAAATGACAAAA
TGAATATATTGGAGCGAAAATTAAATGATGCTGATTCAACTCACTGGCAG
GGAATGTTCGAGCGGGTGCCACTGTGGTGACTAAATTATCGTAACAAGGT
GAGTGaggccattttttcaaaacaaacaaaatttcaaaaaatatttaaaa
agaaaagactCAGCAGGGGACCTGATCACAAAAAGATAATGGGGACTGAA
ATGCCAGAGATCCAGATCAATGAAGTCCTTTTGGAGATTGATGAGGAGGA
GCCAGAGCTGATTGAGATGATGGTTTCCACCACATCAAATGATGAAATTA
TCCATGTCCtgttaaaatcatttttatctgaaaaagacACTAAGGATTTG
CGAAAAGAGATAAAAGAAGTtaagattgaaaaaaaactaacagGAAAGCA
AATCAAAAAGaacatttatttgttattcaataTCAAAAGAGAATTTGTGA
TAAAGTTACGTAACAGCAACAAATCCCTGGTTCCATTCAGTAATACTATC
AAGCCTAACACAGCAGACAAtCCATACATACTTGAAGTATTTTACCAATA
TCAAACAGTGACGCCTTTACCAAGAACAGTCAGCGTAGCAACTTATGAAC
agcttttaaaaagaaaaatgaatagcACTTCAAATCGATTGGCAAAACTT
GAAGACTTTATTCCAGACCTTCCAAAGAaacaagaaatcaaaatcaacgA
AGAAATTAAAGACTTAAATGACAAAATGAATATATTGGAGCGAAAATTAA
ATGATGCTGATTCAACTCACTGGCAGGGAATGTTCGAGCGGGTGCCACTG
TGGTGACTAAATTATCGTAACAAGGTGAGTGaggccattttttcaaaaca
aacaaaatttcaaaaaatatttaaaaagaaaagactCAGCAGGGGACCTG
ATCACAAAAAGATAATGGGGACTGAAATGCCAGAGATCCAGATCAATGAA
GTCCTTTTGGAGATTGATGAGGAGGAGCCAGAGCTGATTGAGATGATGGT
TTCCACCACATCAAATGATGAAATTATCCATGTCCtgttaaaatcatttt
tatctgaaaaagacACTAAGGATTTGCGAAAAGAGATAAAAGAAGTtaag
attgaaaaaaaactaacagGAAAGCAAATCAAAAAGaacatttatttgtt
attcaataTCAAAAGAGAATTTGTGATAAAGTTACGTAACAGCAACAAAT
CCCTGGTTCCATTCAGTAATACTATCAAGCCTAACACAGCAGACAAtCCA
TACATACTTGAAGTATTTTACCAATATCAAACAGTGACGCCTTTACCAAG
AACAGTCAGCGTAGCAACTTATGAACagcttttaaaaagaaaaatgaata
gcACTTCAAATCGATTGGCAAAACTTGAAGACTTTATTCCAGACCTTCCA
AAGAaacaagaaatcaaaatcaacgAAGAAATTAAAGACTTAAATGACAA
AATGAATATATTGGAGCGAAAATTAAATGATGCTGATTCAACTCACTGGC
AGGGAATGTTCGAGCGGGTGCCACTGTGGTGACTAAATTATCGTAACAAG
GTGAGTGaggccattttttcaaaacaaacaaaatttcaaaaaatatttaa
aaagaaaagactCAGCAGGGGACCTGATCACAAAAAGATAATGGGGACTG
AAATGCCAGAGATCCAGATCAATGAAGTCCTTTTGGAGATTGATGAGGAG
GAGCCAGAGCTGATTGAGATGATGGTTTCCACCACATCAAATGATGAAAT
TATCCATGTCCtgttaaaatcatttttatctgaaaaagacACTAAGGATT
TGCGAAAAGAGATAAAAGAAGTtaagattgaaaaaaaactaacagGAAAG
CAAATCAAAAAGaacatttatttgttattcaataTCAAAAGAGAATTTGT
GATAAAGTTACGTAACAGCAACAAATCCCTGGTTCCATTCAGTAATACTA
TCAAGCCTAACACAGCAGACAAtCCATACATACTTGAAGTATTTTACCAA
TATCAAACAGTGACGCCTTTACCAAGAACAGTCAGCGTAGCAACTTATGA
ACagcttttaaaaagaaaaatgaatagcACTTCAAATCGATTGGCAAAAC
TTGAAGACTTTATTCCAGACCTTCCAAAGAaacaagaaatcaaaatcaac
gAAGAAATTAAAGACTTAAATGACAAAATGAATATATTGGAGCGAAAATT
AAATGATGCTGATTCAACTCACTGGCAGGGAATGTTCGAGCGGGTGCCAC
TGTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029991XLOC_029991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047005-exon-scaffold_120-1491911889:222487..222763TCONS_00047005-exon-scaffold_120-1491911889:222487..222763Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1510915933:222487..222763TCONS_00047005-exon-scaffold_120-1510915933:222487..222763Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1575043694:222487..222763TCONS_00047005-exon-scaffold_120-1575043694:222487..222763Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1491911889:224262..224314TCONS_00047005-exon-scaffold_120-1491911889:224262..224314Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1510915933:224262..224314TCONS_00047005-exon-scaffold_120-1510915933:224262..224314Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1575043694:224262..224314TCONS_00047005-exon-scaffold_120-1575043694:224262..224314Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1491911889:224819..224863TCONS_00047005-exon-scaffold_120-1491911889:224819..224863Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1510915933:224819..224863TCONS_00047005-exon-scaffold_120-1510915933:224819..224863Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1575043694:224819..224863TCONS_00047005-exon-scaffold_120-1575043694:224819..224863Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1491911889:225120..225184TCONS_00047005-exon-scaffold_120-1491911889:225120..225184Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1510915933:225120..225184TCONS_00047005-exon-scaffold_120-1510915933:225120..225184Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1575043694:225120..225184TCONS_00047005-exon-scaffold_120-1575043694:225120..225184Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1491911889:225298..225335TCONS_00047005-exon-scaffold_120-1491911889:225298..225335Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1510915933:225298..225335TCONS_00047005-exon-scaffold_120-1510915933:225298..225335Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1575043694:225298..225335TCONS_00047005-exon-scaffold_120-1575043694:225298..225335Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1491911889:225705..225784TCONS_00047005-exon-scaffold_120-1491911889:225705..225784Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1510915933:225705..225784TCONS_00047005-exon-scaffold_120-1510915933:225705..225784Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1575043694:225705..225784TCONS_00047005-exon-scaffold_120-1575043694:225705..225784Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1491911889:227364..227477TCONS_00047005-exon-scaffold_120-1491911889:227364..227477Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1510915933:227364..227477TCONS_00047005-exon-scaffold_120-1510915933:227364..227477Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1575043694:227364..227477TCONS_00047005-exon-scaffold_120-1575043694:227364..227477Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1491911889:227896..229932TCONS_00047005-exon-scaffold_120-1491911889:227896..229932Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1510915933:227896..229932TCONS_00047005-exon-scaffold_120-1510915933:227896..229932Clytia hemisphaericaexon
TCONS_00047005-exon-scaffold_120-1575043694:227896..229932TCONS_00047005-exon-scaffold_120-1575043694:227896..229932Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047005-proteinTCONS_00047005-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_120supercontigscaffold_120:222487..229932 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.08479	7.67444	16.8223	16.3335	5.00569	3.96387	7.41087	7.89827	7.85461	5.52693	6.67399	7.15351	11.2052	12.1893	9.51963	9.16565	8.58586	9.56568	15.8494	13.0622	12.9639	10.3165	8.37431	9.44548	8.25576	10.8308	5.57348	3.25345	3.83088	4.02749
Blast
[Close]
BLAST of TCONS_00047005 vs. Swiss-Prot (Human)
Match: WNT5A (Protein Wnt-5a OS=Homo sapiens GN=WNT5A PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 8.140e-24
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = -3 
Query: 2264 QAVYEKSFVQCRCIGVSTNCAINTCYRQLGRFNKVAKHLENLYRSSVQVELKQGNDDGNSKNTEIRLVETNPNYNKYSAKDMVYIKDSPSYCEKKLSIGSYGVAGRSCTKTGNSVNDCNMLCCDRGYYSRREIVKAKCGCKLIW 2695
            + VY  + V C+C GVS +C++ TC+ QL  F KV   L+  Y S+  + L          N+  +LV+ N  +N  + +D+VYI  SP YC +  S GS G  GR C KT   ++ C ++CC RGY   + +   +C CK  W
Sbjct:  228 RTVYNLADVACKCHGVSGSCSLKTCWLQLADFRKVGDALKEKYDSAAAMRL----------NSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGCELMCCGRGYDQFKTVQTERCHCKFHW 361
The following BLAST results are available for this feature:
BLAST of TCONS_00047005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WNT5A8.140e-2436.11Protein Wnt-5a OS=Homo sapiens GN=WNT5A PE=1 SV=2[more]
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