TCONS_00048405 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048405
Unique NameTCONS_00048405
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048405 ID=TCONS_00048405|Name=TCONS_00048405|organism=Clytia hemisphaerica|type=transcript|length=2300bp
GTTTTGTACTTTGTTGAGAGAAGATCTTGAAGGATTTTaaatcaactttt
tcttctGACCTAAATTTCACTTGAATACCACAAAGATTGTATATCAATGT
TACTACAAACGGTCGAGGTACAACAAACTTCACTCGAAGAAAACAACACA
AACGTCGCCATGTTGGATCGAAATGAACGGGACCGAAAACCTCGATCGAA
CGGTCGTTACTTCAATAAGCAACGTGCACAACAATACTCTCCAACCTCCA
CCGACACTGGATTGTCCGGATCTCCACCGTATGTAAACGGAATTAACGGA
AGCCGGACTAATCTTACAAATGGCTACAAACCATCCTACTCGCCGACATC
TACTGATGCTGAATCAGTCTCACCCTTACCTTCAAATGGGTGGGATTTTT
CAGAGCTCGAAATGCGCTACACATCAATGATAAATAGCCTAAAAGACGAA
CTTTCTTTTCTTGAAGAATCAAACACCAATCTACTTACGGAGCTACGAGA
AAGTCAAAACTCGAATTACGTATTAACGGAAGAAATTCGACGTCAGCAAC
GTAACAACTTAAGTACGTTAGATGAGTTACAAGCGTGCCAAACAGCAAAT
TCAGTTCTGAGACAGGAGTTGCAACGTCTTGAGCAATCCAGCGTTAAAAT
GTCCAGAGATTCTGAAAAATACAAGAAGGCGAACTCGATGCTTAAAGATG
AGATCAAAGACCTCAAAGCTCATAACTATAAACGTAAAAACAGTATGGTT
ACACTCAAAGAGAAAGCTATTGATCTACAAAATGACATTCTAGAAAAAGA
GAAGGATTTCAAAGATTTGTCATCTCTCAAACAAACTGTCAATATAATAG
TCGAAGCGGTCGAAAACGATTCTAACATCGATAACGGCTATTTCCCAACC
GATTCGGACATTTCTAGTAACGATGGCAACGATGATAAACAATTGGGTGC
TTTCACTCCAAAACCGGTAAAAAAATCGGATACTTTCTCAAGTTCTTTGC
CTTCACCTCTAGCAAGGAAATTCTTTGCACATCAAAACGGGGGTAAATCT
CCATTACTGAGACGAAAACAGAAAGACAAATACAACACTGACCTGACTGA
ACGATCTCGCTCGAGATCCTTGAACGTGACTTCTGGGGAAAGCCGGGACG
AAAGTCCCTCTCCTCCCCATTACAACGGTCCCTCATCCGGCCCTTTACCG
GCGGCTGGGGACCGACGACGAGGGTCTCTTGATAGTTTTCATCAGAATAA
GGACTTGAAAGAGACCTCTCTTCGTAACAATACTTTGACACGACAGTTAG
GGAAATCCCTTGAACGACTTCACGATCATAAAATCAAACGATCGGAGTCG
GGGAATCGCCCACGTAGTATGACGTTTGACGATCGACATAACGATAAAAT
GACGGATGACTTTTCTTACGTCGTAAAAGGTGAAAGTATTGGAACGATCA
ACTCTGCTTCTCCCGAGCAAGGAACCTTTGAGCTCTAACATTTCATCTTC
CGCGTACGTCTGAAGAAACGATTTAAGTGGATGCCTAACTCGGATACTAC
TTTGAATTAATACACCCAGGACGTGTATCTTCGAGCTCTAACATCTCTTC
CATTGAGAATGTACAACCATAACAAGCCAAGATGTTGTTTGGACGTTATA
TTAGCGTTCTTTTAACGAATAATGCTCAGGCGAGAAATAATCTAACATTT
CAAATGTTCTAACATTAATTTGTAGAAGGACTTCAAAGAGACTGACATAT
GAACAATAAATGAACATGTTACATCTTGGCTCCCGAAACAACGGATTTAA
TACACAACGTCCCGCAATATCAATCTAACGTCGTACAGATCTTTTTCGAT
GGATATTGTTAATGTAGGATCACTAGGAAGGCACTCATTAACTCAAAAAT
TATTTGTACGCTTGTATGCGTAGCATCAATGAAGTCTTTAGTTAGAAGAC
ATTTTTATCTGTACGAAAATATATCTCTAAAGCGTTCACCATACTTGGAA
ATGTATCTGGAAATTATCACAACTACTGCTGTAAAAATACTACTACGAAC
CGTAAAAATGATCAAGAAGTGAAGTCTGATAGACTTTTCAATGGCAAAAC
AGACcaataaaattttacaactttttactACAGTTTTGCGTGtttttgtc
tttaaaaataatatctaaatatcttttaaaaacctTCTATAAGAATACCC
ACGTATTTTTACTTGGCAATATACTAAGAACATATTTGACTtaagaattt
tgtaaaatattgttattttctACAAAACTTTGAAACATACTAGAAAATGA
Run BLAST on NCBI

transcript from alignment at scaffold_142:870718..876688-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048405 ID=TCONS_00048405|Name=TCONS_00048405|organism=Clytia hemisphaerica|type=transcript|length=5971bp|location=Sequence derived from alignment at scaffold_142:870718..876688- (Clytia hemisphaerica)
GTTTTGTACTTTGTTGAGAGAAGATCTTGAAGGATTTTAAATCAACTTTT
TCTTCTGACCTAAATTTCACTTGAATACCACAAAGATTGTATATCAATGT
TACTACAAACGGTCGAGGTAAACATTATCAATTGCTTTTGAAAATTTGAT
TTTGACTTAAATTTCTAGGACCATACTTGACTAACTTTCATGGGTCTCTC
CAGTACGTTTTCAATGACTTTTTAAACCTTTTGATTTTGACAACTGTAGT
CTTTTTAGGCCACACCCACTCATCAATGCAAGAATCTCTTATTCTCGGCA
AACTTTGAAAGTCTTTGTGAGGTTTTCAGGATAAACAAGTCCGAAACATA
CCATTTAACCATTTAAAATTGCTTTATAAGAGGAACTGTGAATCGCACAG
TTAGTCTTGACCACAATAAAGACTATGAAGTTTCCTTTTATCGCCAAATG
GAACAAATATAAAAGATAGTTATAGCATTCTCCTTGTATCAAACTAAATT
TTGACTCTGGTCAAAGGGGTTGTATTTTTTGATTGAGCAAAGTAGATAGC
GTTGAGGACATTTTTCAAAAAAAAATATTTTGGAAGTTCTAATTCTATCG
GATTTGAAGTGTAAGTATACTCTTGTCTCCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCAGAACTTTTTTTAACAACAACAAAAAAGAAACTTTAGCAAA
TGAACACGTAAAATAAGAACCAATACTAACAAAAAAGGAAAATTTTAATA
CGTTTAAGGTCTATCTACACTTTAATAAAATATTGAACTATTCGAATTTA
ATTGGCGGGGGGGACGTCTATTCGGGAGACAAGAGTAGGTAAGGTAATGC
TATTAGCCACATTTTATCATGTGATTCAATTTTGATGATTTAACTTTTGA
CAACAATAGTTTTGTCATCAGCAGTTCATAGGGTTACTGTGAAAGAAGAT
TGTAGATTTCTTTTTTGAAATTGCGGGGATTGTTGGCTATGTAGACGACA
TATCTCACCGCACATTGTTAATTTTATCCTGTAACATCGACAAAGATTTT
TCATAATTTATCACTGTCAGAATTGTGTAAATTATTCAAAATAATTGTTA
CGAATAAATTCTCTAATCACCGAAAAACATCAGATGTTGACAACTTTCAA
ACTAGTCAACAATCATTCCTCTAAATACGGAAACATGCAATCACGTCATA
CAGTAGGAAAAAAACTTTCATAATTAAGGAGGTTATTTAGTGGCTTTTTC
AGGAAGAAATACCGAAATTAAGCAGATAGTCATTAAAAATATACTCATTA
TATGCAAAATGTTTTACTGTATTTAGAGCATGGTGCCACATTGGCTTTTG
ATTATTTTGTTCTAGAGAGGGGAGTGACTGTTGGATATGAACGGTGTTCT
GCGTAATGTGATATGATGATATCTATGTTGTCGAACGATTTGAGGGTTTT
ATTAAGTCGAGGAATGAATACATAATCAAAATATTGAATTGATGAAGTGA
TTGAATGAATTTAGCCATGAAAATTTTTAATGATTGTGGTTAGAGTCTGA
TGCCACACTACGTTGTTTGAGGGTCCATCTAATGTCTACAACACCCATCT
TACATCTTTGACGTTGATTGGACGTTAAATGAACGTTGAAACAACGCCGT
GTGTCAGTTGGGAGTTTGTATAAGGCATCTTTGTTGAGTCAACATCAGTA
TTAGGCATTAAAATTTGAATAAGGTATTTTCTGTTGGAAAAAGTTTTGCT
AAAAGTTAACTACTAACCTTTGAAAACTTCAAACTATTTTGACAAAAACT
CGCCAAAATAAAAACTTTTGAAACTATGCAAAGTTTTTGGGTCACCTATT
AGAATATCTCATCTTTGTTTCCCAGGTACAACAAACTTCACTCGAAGAAA
ACAACACAAACGTCGCCATGTTGGATCGAAATGAACGGGACCGAAAACCT
CGATCGAACGGTCGTTACTTCAATAAGCAACGTGCACAACAATACTCTCC
AACCTCCACCGACACTGGATTGTCCGGATCTCCACCGTATGTAAACGGAA
TTAACGGAAGCCGGACTAATCTTACAAATGGCTACAAACCATCCTACTCG
CCGACATCTACTGATGCTGAATCAGTCTCACCCTTACCTTCAAATGGGTG
GGATTTTTCAGAGCTCGAAATGCGCTACACATCAATGATAAATAGCCTAA
AAGACGAACTTTCTTTTCTTGAAGAATCAAACACCAATCTACTTACGGAG
CTACGAGAAAGTCAAAACTCGAATTACGTATTAACGGAAGAAATTCGACG
TCAGCAACGTAACAACTTAAGTACGTTAGATGAGTTACAAGCGTGCCAAA
CAGCAAATTCAGTTCTGAGACAGGAGTTGCAACGTCTTGAGCAATCCAGC
GTTAAAATGTCCAGAGATTCTGAAAAATACAAGAAGGCGAACTCGATGCT
TAAAGATGAGATCAAAGACCTCAAAGCTCATAACTATAAACGTAAAAACA
GTATGGTTACACTCAAAGAGAAAGCTATTGATCTACAAAATGACATTCTA
GAAAAAGAGAAGGATTTCAAAGATTTGTCATCTCTCAAACAAACTGTCAA
TATAATAGTCGAAGCGGTCGAAAACGATTCTAACATCGATAACGGCTATT
TCCCAACCGATTCGGACATTTCTAGTAACGATGGCAACGATGATAAACAA
TTGGGTGCTTTCACTCCAAAACCGGTAAAAAAATCGGATACTTTCTCAAG
TTCTTTGCCTTCACCTCTAGCAAGGAAATTCTTTGCACATCAAAACGGGG
GTAAATCTCCATTACTGAGACGAAAACAGAAAGACAAATACAACACTGAC
CTGACTGAACGATCTCGCTCGAGATCCTTGAACGTGACTTCTGGGGAAAG
CCGGGACGAAAGTCCCTCTCCTCCCCATTACAACGGTCCCTCATCCGGCC
CTTTACCGGCGGCTGGGGACCGACGACGAGGGTCTCTTGATAGTTTTCAT
CAGAATAAGGACTTGAAAGAGACCTCTCTTCGTAACAATACTTTGACACG
ACAGTTAGGGAAATCCCTTGAACGACTTCACGATCATAAAATCAAACGAT
CGGAGTCGGGGAATCGCCCACGTAGTATGACGTTTGACGATCGACATAAC
GATAAAATGACGGATGACTTTTCTTACGTCGTAAAAGGTAATGTTTAATG
ACTATGACATGACGGAACTGACGAATCGTTTTTATAGAAAATCTACGTTT
ATTTGTTTCAACAAGCTTATAGTGACTACCGCATGTTTTTCAGACGTGTA
GGGCTGCAATACACATATTTCCTATTAGCAGATTCATGCAAAAGTCACGA
AAGACGTCGAGTAAACAAACTTTTGATTGGCGGAGGGATGCAAAGATTAC
CTCTTACATGGACAATTTGAAAAAATATGCTTGTATGTGCAATATTTCAG
CCAATCAGAGACTTTCTCGACGTTTTTCGTGACTTTTTTACACGAATCCG
CTAATAGGAAATAGGTGTATTCCCTTTATCAACCTTCGTATAAAGAAATC
GATTTAAGCTCCCCTGCTAGGCATTTTCGTACCCAGAGTCTCTTACACCA
CTTTTTGATTGTGCTGATGGATGTGATACAATCGTGAACGCTATTAGATT
CATCGAAAAAGCGAAATAAGGGACTGGGTTCGAGTCTACCTATTTTCTAA
ATGCAAAACTTTTCATGATCTTATAACTGAATGTTCTTCAATTTTTAATG
CTCTTGTGTTCTTATAAGTAAATGTTCCTTCTTTGACTTTTAACGTTATA
TATAACTAACTACAGTTGACTTTCTCTAATTCGATCTCAAAGCACAAAAT
ATTATCTTCGAATTAGAGAACGATTCGAATTACAGAGAGTAATTTATTTC
ATTCTCAAGCCGGGGGACCAATGTTTTAGTTTTAGTTTCGAAAAAACTTA
AATAATAGGAGTTCGAACTAGAGAGAATTGACTGAAGAAAAATGGTCTAC
CTTTTCGATGTTTTATCTAAAAATATGTTCTGTATTTGATGTTCTTTTAG
GTGAAAGTATTGGAACGATCAACTCTGCTTCTCCCGAGCAAGGAACCTTT
GAGCTCTAACATTTCATCTTCCGCGTACGTCTGAAGAAACGATTTAAGTG
GATGCCTAACTCGGATACTACTTTGAATTAATACACCCAGGACGTGTATC
TTCGAGCTCTAACATCTCTTCCATTGAGAATGTACAACCATAACAAGCCA
AGATGTTGTTTGGACGTTATATTAGCGTTCTTTTAACGAATAATGCTCAG
GCGAGAAATAATCTAACATTTCAAATGTTCTAACATTAATTTGTAGAAGG
ACTTCAAAGAGACTGACATATGAACAATAAATGAACATGTTACATCTTGG
CTCCCGAAACAACGGATTTAATACACAACGTCCCGCAATATCAATCTAAC
GTCGTACAGATCTTTTTCGATGGATATTGTTAATGTAGGATCACTAGGAA
GGCACTCATTAACTCAAAAATTATTTGTACGCTTGTATGCGTAGCATCAA
TGAAGTCTTTAGTTAGAAGACATTTTTATCTGTACGAAAATATATCTCTA
AAGCGTTCACCATACTTGGAAATGTATCTGGAAATTATCACAACTACTGC
TGTAAAAATACTACTACGAACCGTAAAAATGATCAAGAAGTGAAGTCTGA
TAGACTTTTCAATGGCAAAACAGACCAATAAAATTTTACAACTTTTTACT
ACAGTTTTGCGTGTTTTTGTCTTTAAAAATAATATCTAAATATCTTTTAA
AAACCTTCTATAAGAATACCCACGTATTTTTACTTGGCAATATACTAAGA
ACATATTTGACTTAAGAATTTTGTAAAATATTGTTATTTTCTACAAAACT
TTGAAACATACTAGAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030795XLOC_030795Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048405-exon-scaffold_142-1575043694:876572..876688TCONS_00048405-exon-scaffold_142-1575043694:876572..876688Clytia hemisphaericaexon
TCONS_00048405-exon-scaffold_142-1575043694:872452..873763TCONS_00048405-exon-scaffold_142-1575043694:872452..873763Clytia hemisphaericaexon
TCONS_00048405-exon-scaffold_142-1575043694:870718..871588TCONS_00048405-exon-scaffold_142-1575043694:870718..871588Clytia hemisphaericaexon
TCONS_00048405-exon-scaffold_142-1510915933:876572..876688TCONS_00048405-exon-scaffold_142-1510915933:876572..876688Clytia hemisphaericaexon
TCONS_00048405-exon-scaffold_142-1510915933:872452..873763TCONS_00048405-exon-scaffold_142-1510915933:872452..873763Clytia hemisphaericaexon
TCONS_00048405-exon-scaffold_142-1510915933:870718..871588TCONS_00048405-exon-scaffold_142-1510915933:870718..871588Clytia hemisphaericaexon
TCONS_00048405-exon-scaffold_142-1491911889:876572..876688TCONS_00048405-exon-scaffold_142-1491911889:876572..876688Clytia hemisphaericaexon
TCONS_00048405-exon-scaffold_142-1491911889:872452..873763TCONS_00048405-exon-scaffold_142-1491911889:872452..873763Clytia hemisphaericaexon
TCONS_00048405-exon-scaffold_142-1491911889:870718..871588TCONS_00048405-exon-scaffold_142-1491911889:870718..871588Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:870718..876688 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.00337825	0.0211417	0	0.773403	0	0	0	0.000300854	2.45651	3.36866	11.4881	2.99901	0	0.626044	0.226405	0	0	0	0	0	0	0.0540308	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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