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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048547 ID=TCONS_00048547|Name=TCONS_00048547|organism=Clytia hemisphaerica|type=transcript|length=2590bpRun BLAST on NCBI protein sequence of TCONS_00048547-protein >TCONS_00048547-protein ID=TCONS_00048547-protein|Name=TCONS_00048547-protein|organism=Clytia hemisphaerica|type=polypeptide|length=733bp MLKIIIKALIALSVVEAVICQSTTLSHDFVIWWSYARFPITGFVFGTIILRun BLAST on NCBI transcript from alignment at scaffold_143:238953..254316- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048547 ID=TCONS_00048547|Name=TCONS_00048547|organism=Clytia hemisphaerica|type=transcript|length=15364bp|location=Sequence derived from alignment at scaffold_143:238953..254316- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_143:238953..254316- >TCONS_00048547 ID=TCONS_00048547|Name=TCONS_00048547|organism=Clytia hemisphaerica|type=CDS|length=48444bp|location=Sequence derived from alignment at scaffold_143:238953..254316- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048547 vs. Swiss-Prot (Human)
Match: TYW1 (S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Homo sapiens GN=TYW1 PE=2 SV=2) HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0 Identity = 357/659 (54.17%), Postives = 459/659 (69.65%), Query Frame = 3
Query: 276 LKIFYGTQTGTSEKFAGDLMKAAAEQGLSATVIDIKEKDPEQLLTNQTDGKSICVFIVSTFVDGTPPESCNNFWTFISDSVNDFRVSKLMLKGMKYTVFGLGNSLYKDSQDVDNYNVFGMNLDENLERLSATRYCKLGLGDDNIQRKDLGNISEDFKEWYGQLLKQIAKDSVTKEEKINGVTPHEDSNGSVKKVSDEKPATNGDVNYESESDSENTTXXXXXXXXX-----XXXXXXLVDVEDIGVVMGKVKQTESEFDEGF--------VGEKSAPNNREMITPMLKKSLEKQGYKLIGSHSGVKICRWTKSMMRGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEWKWKMDEPKKIVDGALENHYKMVKQFRGVPGVKAERYTEAMNVQHCALSLVGEPIMYPEINELINLLHSKMISTFLVTNAQFPDAIRNLKPVTQLYVSVDASTKESLKKIDRPLFRDFWQRFLESLTSLSDKGQRTVYRLTLVKAFNTEEIEGYAKLVSLGKPGFIEVKGVTYCGDSKASSLTMENVPWHQEVVGFVQQLAESLPDYEIASEHEHSNCVLLAHKRFKINNKWHTWIDYPKYHQLMKDYEESNGTKTFKDIDYMEITPEWAVFGNPHRGFDPDETRWHRKKKADVTGGC 2213
+KIFYG+QTGT++ FA L +A L +I++KE DP+ L + K++CVF+V+T+ DG P ES F ++ ++ DFR K LKGM+Y VFGLGNS Y ++N G N+D+ L L A R G GD ++ + G+I DF+ W + + Q+ + +K G + S + S+E+ + + + D+E + +VDVED+G +M VK+ + E ++ +G R MITP L+++L KQGY+LIGSHSGVK+CRWTKSM+RGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEW+WKMD+P+ I+ A+ENH M+KQF+GVPGVKAER+ E M V+HCALSLVGEPIMYPEIN + LLH IS+FLVTNAQFP IRNL+PVTQLYVSVDASTK+SLKKIDRPLF+DFWQRFL+SL +L+ K QRTVYRLTLVKA+N +E++ YA+LVSLG P FIEVKGVTYCG+S ASSLTM +VPWH+EVV FV +L + +P+YEIA EHEHSNC+L+AH++FKI +W TWIDY ++ +L+++YE+S G+KTF DYM TP WA+FG RGFDP +TR RK K+ GC
Sbjct: 79 VKIFYGSQTGTAKGFATVLAEAVTSLDLPVAIINLKEYDPDDHLIEEVTSKNVCVFLVATYTDGLPTESAEWFCKWLEEASIDFRFGKTYLKGMRYAVFGLGNSAY-----ASHFNKVGKNVDKWLWMLGAHRVMSRGEGDCDVVKSKHGSIEADFRAWKTKFISQLQALQKGERKKSCGGHCKKGKCESHQHGSEEREEGSHEQDELHHRDTEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEEKSGLFRNMGRNEDGERRAMITPALREALTKQGYQLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEWRWKMDQPEMILKEAIENHQNMIKQFKGVPGVKAERFEEGMTVKHCALSLVGEPIMYPEINRFLKLLHQCKISSFLVTNAQFPAEIRNLEPVTQLYVSVDASTKDSLKKIDRPLFKDFWQRFLDSLKALAVKQQRTVYRLTLVKAWNVDELQAYAQLVSLGNPDFIEVKGVTYCGESSASSLTMAHVPWHEEVVQFVHELVDLIPEYEIACEHEHSNCLLIAHRKFKIGGEWWTWIDYNRFQELIQEYEDSGGSKTFSAKDYMARTPHWALFGASERGFDPKDTRHQRKNKSKAISGC 732 The following BLAST results are available for this feature:
BLAST of TCONS_00048547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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