TCONS_00048872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048872
Unique NameTCONS_00048872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length767

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048872 ID=TCONS_00048872|Name=TCONS_00048872|organism=Clytia hemisphaerica|type=transcript|length=767bp
CACAGGATGAGCCCAATACTTCGATCAAAGAGGTGATTAAAGAAGCTCTG
CGGGAAGAAGAAGCCGAGGAAACGAACAAACAGAAGCGTGCTTCGAACAT
TATTGTTCACGGAGTACCAGAACAAGATGCCAACACGGACAGGAGCTGGG
TCGAGGATCTCATTAAAACAACCCATTCAAACGTTACCATTAAGCGTATT
GCCCGTTTGGGTAAGACCTCGAACAATAAGAAGCGTCCCATTCTGATCTG
CCTCTTGAACGAAGCCGAGAAATTCAATCTTCTTGGAAATCTACCAGCTC
TGAAAGGGAATGAAAAGTTTTCTGGAGTGAGCGTTACTGAAGATCTTACA
CCTGAAATGCGTAAGAAACTGCGCCTACTGTCTATTGAAGCTAAAGAACT
GAATGAAACCGAAAAACCAGCAACAGAAATATATCGCGTCCGGGGTGATT
CAAAAAACGGCTTCACTGTCAAGAAGGTACCACTCAGAAAATCGTCAACC
CCCAACCAGTCACCAACAATGAAGAATGTCTCCTTCTCGAACAACCTAAC
AGAGACAAATATCATCGACCAACAGGAGCCAACTTtgctcaaaaagaaaa
attaatcaaagaTATGAAAGTTCTGTATACAAATCCCGATCAGTTGACTT
TAAAATGAAGGAATTGCAGTCCATGGCCCATGAGGAAAAGCCTCACATCG
TCGCTATCTGCgaagcgaagacaaaagtaggTACGTTGAGGGAATTACAT
GAATACGAATTCGATGA
Run BLAST on NCBI

protein sequence of TCONS_00048872-protein

>TCONS_00048872-protein ID=TCONS_00048872-protein|Name=TCONS_00048872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
QDEPNTSIKEVIKEALREEEAEETNKQKRASNIIVHGVPEQDANTDRSWV
EDLIKTTHSNVTIKRIARLGKTSNNKKRPILICLLNEAEKFNLLGNLPAL
KGNEKFSGVSVTEDLTPEMRKKLRLLSIEAKELNETEKPATEIYRVRGDS
KNGFTVKKVPLRKSSTPNQSPTMKNVSFSNNLTETNIIDQQEPTLLKKKN
Run BLAST on NCBI

transcript from alignment at scaffold_147:264260..265026

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048872 ID=TCONS_00048872|Name=TCONS_00048872|organism=Clytia hemisphaerica|type=transcript|length=767bp|location=Sequence derived from alignment at scaffold_147:264260..265026 (Clytia hemisphaerica)
TCATCGAATTCGTATTCATGTAATTCCCTCAACGTAcctacttttgtctt
cgcttcGCAGATAGCGACGATGTGAGGCTTTTCCTCATGGGCCATGGACT
GCAATTCCTTCATTTTAAAGTCAACTGATCGGGATTTGTATACAGAACTT
TCATAtctttgattaatttttctttttgagcaAAGTTGGCTCCTGTTGGT
CGATGATATTTGTCTCTGTTAGGTTGTTCGAGAAGGAGACATTCTTCATT
GTTGGTGACTGGTTGGGGGTTGACGATTTTCTGAGTGGTACCTTCTTGAC
AGTGAAGCCGTTTTTTGAATCACCCCGGACGCGATATATTTCTGTTGCTG
GTTTTTCGGTTTCATTCAGTTCTTTAGCTTCAATAGACAGTAGGCGCAGT
TTCTTACGCATTTCAGGTGTAAGATCTTCAGTAACGCTCACTCCAGAAAA
CTTTTCATTCCCTTTCAGAGCTGGTAGATTTCCAAGAAGATTGAATTTCT
CGGCTTCGTTCAAGAGGCAGATCAGAATGGGACGCTTCTTATTGTTCGAG
GTCTTACCCAAACGGGCAATACGCTTAATGGTAACGTTTGAATGGGTTGT
TTTAATGAGATCCTCGACCCAGCTCCTGTCCGTGTTGGCATCTTGTTCTG
GTACTCCGTGAACAATAATGTTCGAAGCACGCTTCTGTTTGTTCGTTTCC
TCGGCTTCTTCTTCCCGCAGAGCTTCTTTAATCACCTCTTTGATCGAAGT
ATTGGGCTCATCCTGTG

Coding sequence (CDS) from alignment at scaffold_147:264260..265026

>TCONS_00048872 ID=TCONS_00048872|Name=TCONS_00048872|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_147:264260..265026 (Clytia hemisphaerica)
ttaatttttctttttgagcaAAGTTGGCTCCTGTTGGTCGATGATATTTG
TCTCTGTTAGGTTGTTCGAGAAGGAGACATTCTTCATTGTTGGTGACTGG
TTGGGGGTTGACGATTTTCTGAGTGGTACCTTCTTGACAGTGAAGCCGTT
TTTTGAATCACCCCGGACGCGATATATTTCTGTTGCTGGTTTTTCGGTTT
CATTCAGTTCTTTAGCTTCAATAGACAGTAGGCGCAGTTTCTTACGCATT
TCAGGTGTAAGATCTTCAGTAACGCTCACTCCAGAAAACTTTTCATTCCC
TTTCAGAGCTGGTAGATTTCCAAGAAGATTGAATTTCTCGGCTTCGTTCA
AGAGGCAGATCAGAATGGGACGCTTCTTATTGTTCGAGGTCTTACCCAAA
CGGGCAATACGCTTAATGGTAACGTTTGAATGGGTTGTTTTAATGAGATC
CTCGACCCAGCTCCTGTCCGTGTTGGCATCTTGTTCTGGTACTCCGTGAA
CAATAATGTTCGAAGCACGCTTCTGTTTGTTCGTTTCCTCGGCTTCTTCT
TCCCGCAGAGCTTCTTTAATCACCTCTTTGATCGAAGTATTGGGCTCATC
CTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031059XLOC_031059Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048872-proteinTCONS_00048872-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048872-exon-scaffold_147-1491911889:264260..265026TCONS_00048872-exon-scaffold_147-1491911889:264260..265026Clytia hemisphaericaexon
TCONS_00048872-exon-scaffold_147-1510915933:264260..265026TCONS_00048872-exon-scaffold_147-1510915933:264260..265026Clytia hemisphaericaexon
TCONS_00048872-exon-scaffold_147-1575043694:264260..265026TCONS_00048872-exon-scaffold_147-1575043694:264260..265026Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:264260..265026 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.34065	0.124001	0.215966	0.986016	0.428707	0.67754	0.817424	0.61221	0.910823	0.223944	0.35402	0.696096	3.02214	2.16842	0	0.116232	0.0954588	0.293527	2.23038	2.5461	1.32457	0.89953	1.2481	2.96066	11.0586	10.4849	0.0871811	0	0.211707	0.287595
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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