TCONS_00049627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049627
Unique NameTCONS_00049627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length675

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049627 ID=TCONS_00049627|Name=TCONS_00049627|organism=Clytia hemisphaerica|type=transcript|length=675bp
GGCATTGTtccaaagatgaaaaatgaagcgcATATGAtgaaaggtgtgaa
aattttagctttccGATTTCTATACAATGAGTCCCTCGTAGTTTGTGTTG
AGTGGCGATATTTGATATAAATGTATATGTATACAGATATAAAGACGACA
TTTGTTGATAAAAGACCTACGATAGCGTTCCACTGGGACACGATCTTCGC
CGTTAAGGTTTCAGTTTGATTAAGAGCTAAAGAAacgatgaaaaataaaa
caaaagcaaTCCAAGATGCGACAACCATGTGAGTTCGTTTGAGGAAAACC
CAGGATGATTCATAGCGTAAATGCAACCAAATGGCAAAGAATCTTTGTAA
TGTCAATAATATCATTGAACTGTACATTGGGATGAAGAATGCAGCTGTCA
TTCCGTAAAAGTATTTTTCATAATTAGGATGCTCGATTTCGATTACAATG
CGAATTGTTTGATACACACTCAATAATATTAAAGAAATCGACAAGCTGAT
AAGTTCAATGTTTTCTGTGAGGTTGAGATTTGTTTTGATCAAAACACAAA
TTCCAAAAGAATGCAGAGAGATGACAAGAAATACTAAACAAATGCACGTT
ATATCAATCCAGTCCCAGTGAGCCATTGATTGAGTATTCTTTGCTAGCAA
TATTAGACTTGAACGTTATTTGCCG
Run BLAST on NCBI

transcript from alignment at scaffold_162:8534..9208

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049627 ID=TCONS_00049627|Name=TCONS_00049627|organism=Clytia hemisphaerica|type=transcript|length=675bp|location=Sequence derived from alignment at scaffold_162:8534..9208 (Clytia hemisphaerica)
CGGCAAATAACGTTCAAGTCTAATATTGCTAGCAAAGAATACTCAATCAA
TGGCTCACTGGGACTGGATTGATATAACGTGCATTTGTTTAGTATTTCTT
GTCATCTCTCTGCATTCTTTTGGAATTTGTGTTTTGATCAAAACAAATCT
CAACCTCACAGAAAACATTGAACTTATCAGCTTGTCGATTTCTTTAATAT
TATTGAGTGTGTATCAAACAATTCGCATTGTAATCGAAATCGAGCATCCT
AATTATGAAAAATACTTTTACGGAATGACAGCTGCATTCTTCATCCCAAT
GTACAGTTCAATGATATTATTGACATTACAAAGATTCTTTGCCATTTGGT
TGCATTTACGCTATGAATCATCCTGGGTTTTCCTCAAACGAACTCACATG
GTTGTCGCATCTTGGAttgcttttgttttatttttcatcgtTTCTTTAGC
TCTTAATCAAACTGAAACCTTAACGGCGAAGATCGTGTCCCAGTGGAACG
CTATCGTAGGTCTTTTATCAACAAATGTCGTCTTTATATCTGTATACATA
TACATTTATATCAAATATCGCCACTCAACACAAACTACGAGGGACTCATT
GTATAGAAATCggaaagctaaaattttcacacctttcaTCATATgcgctt
catttttcatctttggaACAATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031465XLOC_031465Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049627-exon-scaffold_162-1491911889:8534..9208TCONS_00049627-exon-scaffold_162-1491911889:8534..9208Clytia hemisphaericaexon
TCONS_00049627-exon-scaffold_162-1510915933:8534..9208TCONS_00049627-exon-scaffold_162-1510915933:8534..9208Clytia hemisphaericaexon
TCONS_00049627-exon-scaffold_162-1575043694:8534..9208TCONS_00049627-exon-scaffold_162-1575043694:8534..9208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_162supercontigscaffold_162:8534..9208 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0742412	0.290026	0.59034	0.102669	0	2.06992	0.824709	1.10596	2.42063	0.30853	0.71163	0.0545385	0	0.0432305	0.0634939	0	0	0	0.084688	0.0906631	0	0.087292	0.238083	0	0.0822236	0	0	0	0.189247
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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