TCONS_00049628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049628
Unique NameTCONS_00049628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length556

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049628 ID=TCONS_00049628|Name=TCONS_00049628|organism=Clytia hemisphaerica|type=transcript|length=556bp
GAACGGATTTCTCATTCCCTTTTATGCTGGAATGATTTTATTGACATTAC
AAAGATTCTTTGCTATTTGGTTGCATTTACGTTATGAATCATCTTGGGTT
TTCCTCAAACGAACTCATATGGTTGTTGGGTCATGGCTGATTGGAACTAT
ATTTCTCGGCTTCACTTTACTAATTAAAATATTGGATTTATTGTCTGAAG
ACGAGTGGAGACGCTTGATGACCATTGTACCTACTACAGGGATATTTGCA
ACGAACCTTGCCTTCGTAGGAGTATACACATATATTTACATTAAATATCG
TAAATCAACTGAAGCTACACGAAGTTCACTATACCAAAAGCGTAAAGCAA
AAATCTTTGCTCCATTTTTGATATGTTTATCATTCTTCGTCTTTGGGACA
GTTCCTCATTTTTTTGAAGGTTTGATAATGAATTTTCGTTATGCTTATTT
GTGGTTTTGCATGGATGGGATCAGTAATTTCtttgtctttgttttgatga
atGAGAAAATTCGAAGACTTTGGaagaaatggaggaacaaaaatcACGTC
GAACAC
Run BLAST on NCBI

protein sequence of TCONS_00049628-protein

>TCONS_00049628-protein ID=TCONS_00049628-protein|Name=TCONS_00049628-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
NGFLIPFYAGMILLTLQRFFAIWLHLRYESSWVFLKRTHMVVGSWLIGTI
FLGFTLLIKILDLLSEDEWRRLMTIVPTTGIFATNLAFVGVYTYIYIKYR
KSTEATRSSLYQKRKAKIFAPFLICLSFFVFGTVPHFFEGLIMNFRYAYL
WFCMDGISNFFVFVLMNEKIRRLWKKWRNKNHVEH
Run BLAST on NCBI

transcript from alignment at scaffold_162:13254..13809

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049628 ID=TCONS_00049628|Name=TCONS_00049628|organism=Clytia hemisphaerica|type=transcript|length=556bp|location=Sequence derived from alignment at scaffold_162:13254..13809 (Clytia hemisphaerica)
GTGTTCGACGTgatttttgttcctccatttcttCCAAAGTCTTCGAATTT
TCTCattcatcaaaacaaagacaaaGAAATTACTGATCCCATCCATGCAA
AACCACAAATAAGCATAACGAAAATTCATTATCAAACCTTCAAAAAAATG
AGGAACTGTCCCAAAGACGAAGAATGATAAACATATCAAAAATGGAGCAA
AGATTTTTGCTTTACGCTTTTGGTATAGTGAACTTCGTGTAGCTTCAGTT
GATTTACGATATTTAATGTAAATATATGTGTATACTCCTACGAAGGCAAG
GTTCGTTGCAAATATCCCTGTAGTAGGTACAATGGTCATCAAGCGTCTCC
ACTCGTCTTCAGACAATAAATCCAATATTTTAATTAGTAAAGTGAAGCCG
AGAAATATAGTTCCAATCAGCCATGACCCAACAACCATATGAGTTCGTTT
GAGGAAAACCCAAGATGATTCATAACGTAAATGCAACCAAATAGCAAAGA
ATCTTTGTAATGTCAATAAAATCATTCCAGCATAAAAGGGAATGAGAAAT
CCGTTC

Coding sequence (CDS) from alignment at scaffold_162:13254..13809

>TCONS_00049628 ID=TCONS_00049628|Name=TCONS_00049628|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_162:13254..13809 (Clytia hemisphaerica)
GTGTTCGACGTgatttttgttcctccatttcttCCAAAGTCTTCGAATTT
TCTCattcatcaaaacaaagacaaaGAAATTACTGATCCCATCCATGCAA
AACCACAAATAAGCATAACGAAAATTCATTATCAAACCTTCAAAAAAATG
AGGAACTGTCCCAAAGACGAAGAATGATAAACATATCAAAAATGGAGCAA
AGATTTTTGCTTTACGCTTTTGGTATAGTGAACTTCGTGTAGCTTCAGTT
GATTTACGATATTTAATGTAAATATATGTGTATACTCCTACGAAGGCAAG
GTTCGTTGCAAATATCCCTGTAGTAGGTACAATGGTCATCAAGCGTCTCC
ACTCGTCTTCAGACAATAAATCCAATATTTTAATTAGTAAAGTGAAGCCG
AGAAATATAGTTCCAATCAGCCATGACCCAACAACCATATGAGTTCGTTT
GAGGAAAACCCAAGATGATTCATAACGTAAATGCAACCAAATAGCAAAGA
ATCTTTGTAATGTCAATAAAATCATTCCAGCATAAAAGGGAATGAGAAAT
CCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031466XLOC_031466Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049628-exon-scaffold_162-1491911889:13254..13809TCONS_00049628-exon-scaffold_162-1491911889:13254..13809Clytia hemisphaericaexon
TCONS_00049628-exon-scaffold_162-1510915933:13254..13809TCONS_00049628-exon-scaffold_162-1510915933:13254..13809Clytia hemisphaericaexon
TCONS_00049628-exon-scaffold_162-1575043694:13254..13809TCONS_00049628-exon-scaffold_162-1575043694:13254..13809Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049628-proteinTCONS_00049628-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_162supercontigscaffold_162:13254..13809 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.204483	0.199403	0	0	0.275756	0.108953	0	0.123059	0.172314	0	0	0.0680922	0.339987	0.211848	0	0.062303	0	0.0786685	0.774847	1.41214	0.358995	0.289301	0.351684	0.145734	0	0.685782	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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