TCONS_00049668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049668
Unique NameTCONS_00049668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049668 ID=TCONS_00049668|Name=TCONS_00049668|organism=Clytia hemisphaerica|type=transcript|length=544bp
TGCATAATCAATAAAGAACAACAAATAGAATAAGCATCAATGCTCAAAAG
aataacagaaaaataaatattttcttactgGGTGGTTAGTGTTTAGGCTG
ACGGTAATATCACATTCTACAGGAATTCCTAGCATTCGAATAAAGTAGTT
CGAACAAAAGACCAAGAAACGCTAATCGTGACATCTAATCACGTGATAAC
AAAAACATTCCATTTGTATTACTTcgaaacgcccccttcttttgaACGCC
CTCTTTTGTTTAGAAAAACTATGAATAAAGGATATGATTGAATTACTTAA
ACTTTtgtatttgttcgaattattaAACAACACCCCCTAATATAAACGCC
TCTCTGTGTCTTAGGCTTCTAAAAAAAAAGCCCTGGGAATTTATTTATAT
GGAGCCATATGAAGTAATATAATACGAGGCGcctcagggggtacccgatt
ccgcaattccgccaattttttccaatttccgtcaaaccgtcttattgaac
caaaattccgtcaccgaaaattcctttgaaattcaatctttttg
Run BLAST on NCBI

transcript from alignment at scaffold_164:113316..113859

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049668 ID=TCONS_00049668|Name=TCONS_00049668|organism=Clytia hemisphaerica|type=transcript|length=544bp|location=Sequence derived from alignment at scaffold_164:113316..113859 (Clytia hemisphaerica)
caaaaagattgaatttcaaaggaattttcggtgacggaattttggttcaa
taagacggtttgacggaaattggaaaaaattggcggaattgcggaatcgg
gtaccccctgaggCGCCTCGTATTATATTACTTCATATGGCTCCATATAA
ATAAATTCCCAGGGCTTTTTTTTTAGAAGCCTAAGACACAGAGAGGCGTT
TATATTAGGGGGTGTTGTTtaataattcgaacaaatacaAAAGTTTAAGT
AATTCAATCATATCCTTTATTCATAGTTTTTCTAAACAAAAGAGGGCGTt
caaaagaagggggcgtttcgAAGTAATACAAATGGAATGTTTTTGTTATC
ACGTGATTAGATGTCACGATTAGCGTTTCTTGGTCTTTTGTTCGAACTAC
TTTATTCGAATGCTAGGAATTCCTGTAGAATGTGATATTACCGTCAGCCT
AAACACTAACCACCcagtaagaaaatatttatttttctgttattCTTTTG
AGCATTGATGCTTATTCTATTTGTTGTTCTTTATTGATTATGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031490XLOC_031490Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049668-exon-scaffold_164-1491911889:113316..113859TCONS_00049668-exon-scaffold_164-1491911889:113316..113859Clytia hemisphaericaexon
TCONS_00049668-exon-scaffold_164-1510915933:113316..113859TCONS_00049668-exon-scaffold_164-1510915933:113316..113859Clytia hemisphaericaexon
TCONS_00049668-exon-scaffold_164-1575043694:113316..113859TCONS_00049668-exon-scaffold_164-1575043694:113316..113859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_164supercontigscaffold_164:113316..113859 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.105904	0.112231	0	0	0.428451	0.338568	1.2254	0.912517	0.844492	0.926195	0.925705	1.26956	1.0147	1.00667	0.24073	0.387208	0	0.342646	0.356976	0.706829	0.670209	0.623857	0.137184	0	0	0.101478	0.320476	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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