TCONS_00049784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049784
Unique NameTCONS_00049784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049784 ID=TCONS_00049784|Name=TCONS_00049784|organism=Clytia hemisphaerica|type=transcript|length=629bp
CCtttttcagtattttcaaaGCCTTCATGGAAAAAAGAATACACGTTCTC
TGAATGTTATGGGGCTAGTATCTCAGCAAAATCCATCCAAGATATTGTAC
AGAATGTCATCTCCTCATCTGACAACTCAACCTGGGTACGTTACATGACT
CATATGAGAACGTTGTATGGTGGTTTTTCAACTGAAGTTATGTTCAGAGA
GTATTGTGGTGCACAACATTTTACTTTGGAAGCTTACTTAGCTTGTGTGA
AATATTATGAGACCAATGGATTTTGAATCCGTCGGTTTTTTGTGAGTAAC
TAACAGAAAACAATGTCATGTTTTTGTTGTCCTATTtagatttttaataa
ttttcatttttcaaatatacaaTATTTTGGAACctattttttaacctttt
tactCAGTTTCTCCTAACTACTGTTTTTTGTTATACCCACATACATATTA
TTTTAATGATATGAATTTTCAATTACATTTTGAATTCATATAATTGTGTA
GACATCAGTGGGCATTGCAAGGGGAATCGAATGACCTTACTTTCCAAAAA
GACGAACTTGCAAGCTACAATCAGCgtcgaaatatttggcacaaaaggag
aattccctcaaaactttgtAACTGCAAGT
Run BLAST on NCBI

transcript from alignment at scaffold_166:461240..461868+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049784 ID=TCONS_00049784|Name=TCONS_00049784|organism=Clytia hemisphaerica|type=transcript|length=629bp|location=Sequence derived from alignment at scaffold_166:461240..461868+ (Clytia hemisphaerica)
CCtttttcagtattttcaaaGCCTTCATGGAAAAAAGAATACACGTTCTC
TGAATGTTATGGGGCTAGTATCTCAGCAAAATCCATCCAAGATATTGTAC
AGAATGTCATCTCCTCATCTGACAACTCAACCTGGGTACGTTACATGACT
CATATGAGAACGTTGTATGGTGGTTTTTCAACTGAAGTTATGTTCAGAGA
GTATTGTGGTGCACAACATTTTACTTTGGAAGCTTACTTAGCTTGTGTGA
AATATTATGAGACCAATGGATTTTGAATCCGTCGGTTTTTTGTGAGTAAC
TAACAGAAAACAATGTCATGTTTTTGTTGTCCTATTtagatttttaataa
ttttcatttttcaaatatacaaTATTTTGGAACctattttttaacctttt
tactCAGTTTCTCCTAACTACTGTTTTTTGTTATACCCACATACATATTA
TTTTAATGATATGAATTTTCAATTACATTTTGAATTCATATAATTGTGTA
GACATCAGTGGGCATTGCAAGGGGAATCGAATGACCTTACTTTCCAAAAA
GACGAACTTGCAAGCTACAATCAGCgtcgaaatatttggcacaaaaggag
aattccctcaaaactttgtAACTGCAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031559XLOC_031559Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049784-exon-scaffold_166-1491911889:461240..461868TCONS_00049784-exon-scaffold_166-1491911889:461240..461868Clytia hemisphaericaexon
TCONS_00049784-exon-scaffold_166-1510915933:461240..461868TCONS_00049784-exon-scaffold_166-1510915933:461240..461868Clytia hemisphaericaexon
TCONS_00049784-exon-scaffold_166-1575043694:461240..461868TCONS_00049784-exon-scaffold_166-1575043694:461240..461868Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:461240..461868 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.328108	0	0	3.40305	3.14253	4.1806	7.2512	1.37094	1.4517	2.17906	2.51113	3.80109	2.2477	0.668066	0.648191	0	0.290362	0.368685	0.564289	0.383908	0.281313	0.405399	0.147763	1.09342	4.64777	0.208441	0	0.255188	0.502613
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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