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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049911 ID=TCONS_00049911|Name=TCONS_00049911|organism=Clytia hemisphaerica|type=transcript|length=881bp
ACATAACTTGCTACGAGGAGAcacaaattttggaaaagaaatCAGATCAA
ATTGGTACTTGCTTTAGCACACAACTATGGCTCTCCAACGCTCTTTTCTA
TGCTTTTTCGTTCTTTTAGCTTTTGCTAATCTTCTACACACATCTACATC
TTCTATTGTAGAGGTGCAACAACCTTTCAGCACCGAGGCAAAAGTAAAGC
CTGGTGATTCAGTTGAATTTATATGGCGCTATCAAAGACGGGCGCGTCTT
CATAGATTCTTCTGTGGATATTTCAACTTGGAACAACAATTCGTTATACT
GGCTGCAGACTTCAATGGTAAGGAGTTTTCTATATCTCACCAAGTACACG
ATGCCCCTAAGGATGATAAGAAATTACTTGGACGCATTAAGAACAGTTAC
GCTGTAAACCACGGTTCGAAAATAGCAGAACGTGGCATAACTTTGACCAA
ATACACCTTTACTGATGCTGGTACCTTTGAATGTGGATATCAGAAAACTC
CAATTTCCGGGATACAATATGAAGGAAAAATTACGGTAACGACAAAATAC
GGACATGCTCGGCCCCCTCAAGCATTGGAATATAGAGGACAGCAATCGGC
AAGAGACCGTTCAaataaagagaagaaaaaatcagGCTCCTTCCCAGGCT
GGGCTATCGGTCTTTCAATCGGCTTACCAATACTGATCGCCATTGTGGCT
ATCGCAGCATGTATTTACAAACGAAGCAATAAGTTACGGCAATCATTGGG
AAGTGACCGTGAAGGATTGATGGCTGATGTCGCCTCTAGTGATGATGATG
AAGTTCTCCAGTATCAAAAGAAAGTTGACTTGGCTGCTGCCAAATCCAAA
TAATTGCCCCAACCACCACTCCAAATCCCCC Run BLAST on NCBI protein sequence of TCONS_00049911-protein >TCONS_00049911-protein ID=TCONS_00049911-protein|Name=TCONS_00049911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MALQRSFLCFFVLLAFANLLHTSTSSIVEVQQPFSTEAKVKPGDSVEFIW
RYQRRARLHRFFCGYFNLEQQFVILAADFNGKEFSISHQVHDAPKDDKKL
LGRIKNSYAVNHGSKIAERGITLTKYTFTDAGTFECGYQKTPISGIQYEG
KITVTTKYGHARPPQALEYRGQQSARDRSNKEKKKSGSFPGWAIGLSIGL
PILIAIVAIAACIYKRSNKLRQSLGSDREGLMADVASSDDDEVLQYQKKV
DLAAAKSK Run BLAST on NCBI transcript from alignment at scaffold_167:664026..666417+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049911 ID=TCONS_00049911|Name=TCONS_00049911|organism=Clytia hemisphaerica|type=transcript|length=2392bp|location=Sequence derived from alignment at scaffold_167:664026..666417+ (Clytia hemisphaerica)
ACATAACTTGCTACGAGGAGAcacaaattttggaaaagaaatCAGATCAA
ATTGGTACTTGCTTTAGCACACAACTATGGCTCTCCAACGCTCTTTTCTA
TGCTTTTTCGTTCTTTTAGCTTTTGCTAATCTTCTACACACATCTACATC
TTCTATTGTAGAGGTAAGTTTTCGCTTTTCTTGTTACCAAGTTTGAGAGG
TACACAGGAAAGAAATCTCACAGCATTCTCACTCCACATTCTCATAACCA
AGAAAGTTGATGTTTGAGAGCAAAGTTTCACGTTTTTGAATCTTCTTTAT
GAAACTTTCTACTGATATTCTTCACTCAGTACTGAATAAACTTACTCCCA
TTAATCCATTCTTCCTCATGGCAGGTTTCTGGCTCTTCTAGAGGCTGTTC
ATTAGGTAGGCTGTTCATTCACGAGAGTAGGTAGCGGCTTCCATCCTCTT
CCATTCAATGaaaactaaaatattttctttcagcaAAATCTTTTCGGTAA
AAAACTATCTTCAGTGCTAGATATTAAAGTAAAACTTTTAACAAACAGAT
TTTGAACATCTATCTAGTgctgaaatgaaataaaactttgCCGTTTCTTT
ACTCATTAAAAATTGTATCAATCTCTTTTGCAGGTGCAACAACCTTTCAG
CACCGAGGCAAAAGTAAAGCCTGGTGATTCAGTTGAATTTATATGGCGCT
ATCAAAGACGGGCGCGTCTTCATAGATTCTTCTGTGGATATTTCAACTTG
GAACAACAATTCGTTATACTGGCTGCAGACTTCAATGGTAAGTTTTTCCT
AACTAACAAGTTTTTTTCTAAGCATAAGATACATCTTTGAAAGCCTCATT
ATCCTTATAACACTACTTGTTTGAGGTCTATCAATGCTTTGCTTATGGGG
TGAAGTAAATTGGACATTATGcgtgtttttaatatttttgggaTTTGAAT
GTTTCGGAAGCCTGAGGCTTAGCAAATACTAAAGTTCGTTTAAGATTTGA
GCCAGAAAATGCTTGCTCATTAACACGTACTTATATGACACAAAACACCA
ACAGAACTTTCATAACACCCAcatattactattattattttaGGTAAGGA
GTTTTCTATATCTCACCAAGTACACGATGCCCCTAAGGATGATAAGAAAT
TACTTGGACGCATTAAGAACAGTTACGCTGTAAACCACGGTTCGAAAATA
GCAGAACGTGGCATAACTTTGACCAAATACACCTTTACTGATGCTGGTAC
CTTTGAATGTGGATATCAGAAAACTCCAATTTCCGGGATACAATATGAAG
GAAAAATTACGGTAACGACAAAATACGGACATGCTCGGCCCCCTCAAGCA
TTGGAATATAGAGGACAGCAATCGGCAAGAGACCGTTCAaataaagagaa
gaaaaaatcagGCTCCTTCCCAGGCTGGGCTATCGGTAAGTGATCACTTA
CTTACACTTGCTGAAAAACTTTTATAAACAAATAtgattttatgaataaa
aatttaaaaaaataaaattcagatTCAAATCTCTTAATGACACAAAGGTA
GTTTCATGTTTCTGTGATGAACATCCTTCCATGATGTGATTCTCAATTCC
CAAGATAATTTTAACAGGCTTTTGAGAAAAGAAACTAAGTCATTAGGTAA
TAGAAGTTGGCAGAAATATTGAAGATATTGTTATACGAAGGTCTAAAGGA
TGACTGTGGTGCATGAAAGTTTTGAGTAAGTTTTTCAGCAAGAGTCGGTA
CATAATAGAATTTCGTTTGTTTGATAGATGATATTTCGATAACATTAAGA
AAATGCCAGATTTAGTACTCTAATAATCAGGTTTTAAGCAAAATCTTACC
GGCTCTTTTTTCACCGGCCGTTATTGGTATTATTCATATAAAAGATTGGA
ATTAAATTAGAACCGGGCTAATAATAGAAATAGTTGCGATTTGGCGTAAC
AAGAGCCGGTAAAAAGAACCATTAAGGTagttaaaattttctatttccat
GATTTCTGCTATGTAGGCAAAAATGACAATTTAAGTCCGGTCAACTTGAT
TACACCGTGAATATATCTTTCTTTGAATTCGGCGTTAATCAGACCAAAAT
AAGACCCCTGGTTATTCAAATAAAGTACCTTGCATATGAAAACTTACCTA
TCCTTCTTTTCTTTGGTCAGGTCTTTCAATCGGCTTACCAATACTGATCG
CCATTGTGGCTATCGCAGCATGTATTTACAAACGAAGCAATAAGTTACGG
CAATCATTGGGAAGTGACCGTGAAGGATTGATGGCTGATGTCGCCTCTAG
TGATGATGATGAAGTTCTCCAGTATCAAAAGAAAGTTGACTTGGCTGCTG
CCAAATCCAAATAATTGCCCCAACCACCACTCCAAATCCCCC Coding sequence (CDS) from alignment at scaffold_167:664026..666417+ >TCONS_00049911 ID=TCONS_00049911|Name=TCONS_00049911|organism=Clytia hemisphaerica|type=CDS|length=3108bp|location=Sequence derived from alignment at scaffold_167:664026..666417+ (Clytia hemisphaerica)
ATGGCTCTCCAACGCTCTTTTCTATGCTTTTTCGTTCTTTTAGCTTTTGC
TAATCTTCTACACACATCTACATCTTCTATTGTAGAGGTGCAACAACCTT
TCAGCACCGAGGCAAAAGTAAAGCCTGGTGATTCAGTTGAATTTATATGG
CGCTATCAAAGACGGGCGCGTCTTCATAGATTCTTCTGTGGATATTTCAA
CTTGGAACAACAATTCGTTATACTGGCTGCAGACTTCAATGGTAAGGAGT
TTTCTATATCTCACCAAGTACACGATGCCCCTAAGGATGATAAGAAATTA
CTTGGACGCATTAAGAACAGTTACGCTGTAAACCACGGTTCGAAAATAGC
AGAACGTGGCATAACTTTGACCAAATACACCTTTACTGATGCTGGTACCT
TTGAATGTGGATATCAGAAAACTCCAATTTCCGGGATACAATATGAAGGA
AAAATTACGGTAACGACAAAATACGGACATGCTCGGCCCCCTCAAGCATT
GGAATATAGAGGACAGCAATCGGCAAGAGACCGTTCAaataaagagaaga
aaaaatcagGCTCCTTCCCAGGCTGGGCTATCGGTCTTTCAATCGGCTTA
CCAATACTGATCGCCATTGTGGCTATCGCAGCATGTATTTACAAACGAAG
CAATAAGTTACGGCAATCATTGGGAAGTGACCGTGAAGGATTGATGGCTG
ATGTCGCCTCTAGTGATGATGATGAAGTTCTCCAGTATCAAAAGAAAGTT
GACTTGGCTGCTGCCAAATCCAAATAAATGGCTCTCCAACGCTCTTTTCT
ATGCTTTTTCGTTCTTTTAGCTTTTGCTAATCTTCTACACACATCTACAT
CTTCTATTGTAGAGGTGCAACAACCTTTCAGCACCGAGGCAAAAGTAAAG
CCTGGTGATTCAGTTGAATTTATATGGCGCTATCAAAGACGGGCGCGTCT
TCATAGATTCTTCTGTGGATATTTCAACTTGGAACAACAATTCGTTATAC
TGGCTGCAGACTTCAATGGTAAGGAGTTTTCTATATCTCACCAAGTACAC
GATGCCCCTAAGGATGATAAGAAATTACTTGGACGCATTAAGAACAGTTA
CGCTGTAAACCACGGTTCGAAAATAGCAGAACGTGGCATAACTTTGACCA
AATACACCTTTACTGATGCTGGTACCTTTGAATGTGGATATCAGAAAACT
CCAATTTCCGGGATACAATATGAAGGAAAAATTACGGTAACGACAAAATA
CGGACATGCTCGGCCCCCTCAAGCATTGGAATATAGAGGACAGCAATCGG
CAAGAGACCGTTCAaataaagagaagaaaaaatcagGCTCCTTCCCAGGC
TGGGCTATCGGTCTTTCAATCGGCTTACCAATACTGATCGCCATTGTGGC
TATCGCAGCATGTATTTACAAACGAAGCAATAAGTTACGGCAATCATTGG
GAAGTGACCGTGAAGGATTGATGGCTGATGTCGCCTCTAGTGATGATGAT
GAAGTTCTCCAGTATCAAAAGAAAGTTGACTTGGCTGCTGCCAAATCCAA
ATAAATGGCTCTCCAACGCTCTTTTCTATGCTTTTTCGTTCTTTTAGCTT
TTGCTAATCTTCTACACACATCTACATCTTCTATTGTAGAGGTGCAACAA
CCTTTCAGCACCGAGGCAAAAGTAAAGCCTGGTGATTCAGTTGAATTTAT
ATGGCGCTATCAAAGACGGGCGCGTCTTCATAGATTCTTCTGTGGATATT
TCAACTTGGAACAACAATTCGTTATACTGGCTGCAGACTTCAATGGTAAG
GAGTTTTCTATATCTCACCAAGTACACGATGCCCCTAAGGATGATAAGAA
ATTACTTGGACGCATTAAGAACAGTTACGCTGTAAACCACGGTTCGAAAA
TAGCAGAACGTGGCATAACTTTGACCAAATACACCTTTACTGATGCTGGT
ACCTTTGAATGTGGATATCAGAAAACTCCAATTTCCGGGATACAATATGA
AGGAAAAATTACGGTAACGACAAAATACGGACATGCTCGGCCCCCTCAAG
CATTGGAATATAGAGGACAGCAATCGGCAAGAGACCGTTCAaataaagag
aagaaaaaatcagGCTCCTTCCCAGGCTGGGCTATCGGTCTTTCAATCGG
CTTACCAATACTGATCGCCATTGTGGCTATCGCAGCATGTATTTACAAAC
GAAGCAATAAGTTACGGCAATCATTGGGAAGTGACCGTGAAGGATTGATG
GCTGATGTCGCCTCTAGTGATGATGATGAAGTTCTCCAGTATCAAAAGAA
AGTTGACTTGGCTGCTGCCAAATCCAAATAAATGGCTCTCCAACGCTCTT
TTCTATGCTTTTTCGTTCTTTTAGCTTTTGCTAATCTTCTACACACATCT
ACATCTTCTATTGTAGAGGTGCAACAACCTTTCAGCACCGAGGCAAAAGT
AAAGCCTGGTGATTCAGTTGAATTTATATGGCGCTATCAAAGACGGGCGC
GTCTTCATAGATTCTTCTGTGGATATTTCAACTTGGAACAACAATTCGTT
ATACTGGCTGCAGACTTCAATGGTAAGGAGTTTTCTATATCTCACCAAGT
ACACGATGCCCCTAAGGATGATAAGAAATTACTTGGACGCATTAAGAACA
GTTACGCTGTAAACCACGGTTCGAAAATAGCAGAACGTGGCATAACTTTG
ACCAAATACACCTTTACTGATGCTGGTACCTTTGAATGTGGATATCAGAA
AACTCCAATTTCCGGGATACAATATGAAGGAAAAATTACGGTAACGACAA
AATACGGACATGCTCGGCCCCCTCAAGCATTGGAATATAGAGGACAGCAA
TCGGCAAGAGACCGTTCAaataaagagaagaaaaaatcagGCTCCTTCCC
AGGCTGGGCTATCGGTCTTTCAATCGGCTTACCAATACTGATCGCCATTG
TGGCTATCGCAGCATGTATTTACAAACGAAGCAATAAGTTACGGCAATCA
TTGGGAAGTGACCGTGAAGGATTGATGGCTGATGTCGCCTCTAGTGATGA
TGATGAAGTTCTCCAGTATCAAAAGAAAGTTGACTTGGCTGCTGCCAAAT
CCAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049911-exon-scaffold_167-1491911889:664026..664188 | TCONS_00049911-exon-scaffold_167-1491911889:664026..664188 | Clytia hemisphaerica | exon |
| TCONS_00049911-exon-scaffold_167-1510915933:664026..664188 | TCONS_00049911-exon-scaffold_167-1510915933:664026..664188 | Clytia hemisphaerica | exon |
| TCONS_00049911-exon-scaffold_167-1575043694:664026..664188 | TCONS_00049911-exon-scaffold_167-1575043694:664026..664188 | Clytia hemisphaerica | exon |
| TCONS_00049911-exon-scaffold_167-1491911889:664659..664812 | TCONS_00049911-exon-scaffold_167-1491911889:664659..664812 | Clytia hemisphaerica | exon |
| TCONS_00049911-exon-scaffold_167-1510915933:664659..664812 | TCONS_00049911-exon-scaffold_167-1510915933:664659..664812 | Clytia hemisphaerica | exon |
| TCONS_00049911-exon-scaffold_167-1575043694:664659..664812 | TCONS_00049911-exon-scaffold_167-1575043694:664659..664812 | Clytia hemisphaerica | exon |
| TCONS_00049911-exon-scaffold_167-1491911889:665119..665460 | TCONS_00049911-exon-scaffold_167-1491911889:665119..665460 | Clytia hemisphaerica | exon |
| TCONS_00049911-exon-scaffold_167-1510915933:665119..665460 | TCONS_00049911-exon-scaffold_167-1510915933:665119..665460 | Clytia hemisphaerica | exon |
| TCONS_00049911-exon-scaffold_167-1575043694:665119..665460 | TCONS_00049911-exon-scaffold_167-1575043694:665119..665460 | Clytia hemisphaerica | exon |
| TCONS_00049911-exon-scaffold_167-1491911889:666196..666417 | TCONS_00049911-exon-scaffold_167-1491911889:666196..666417 | Clytia hemisphaerica | exon |
| TCONS_00049911-exon-scaffold_167-1510915933:666196..666417 | TCONS_00049911-exon-scaffold_167-1510915933:666196..666417 | Clytia hemisphaerica | exon |
| TCONS_00049911-exon-scaffold_167-1575043694:666196..666417 | TCONS_00049911-exon-scaffold_167-1575043694:666196..666417 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:664026..666417 + |
Blast
The following BLAST results are available for this feature:
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