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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049992 ID=TCONS_00049992|Name=TCONS_00049992|organism=Clytia hemisphaerica|type=transcript|length=1329bp
CTTTAAGCGAGGGAAAGCGAGACAAAGTCAGACTTTTCGATGCAGCGCGT
TTTTTCTTTGTGTCCTTTTCCTTCGTTCACTCTTTCCATCAGTGACATTT
GAAAACCCACCTTCAAGCTTTATATACCAACGACTTCGAATACATAGCAG
AATGGCTGATACAGAAGAACAAGTCCCACAAACTGAAGAACCAACCACTG
AAAAGGTTGAATCAACAGAAGAGGAAAAGCCAGAAACTGAGGAAGAAGAA
ATCACAGAATTTATTAGAGACCCTATTCTTGATGAAGAggaaatgaaaaa
agtttttgttggtGGAATTTCAACAGAAAGTACTGAAGATGAACTAAAAC
AATACTTTGAAGAAAAGTGTGGCGGATCTGTTACAGACACtgttattatt
aaaaaagaCACTGATAAGAAGAGTCATTTTGGATTTCTGACCTTTGAAAC
ATCAGATCTTGTTGATGAGGTCTTATTGAAAAGGGAGGAATTGAACTTCA
AAGGTAGACAATTGGATGTGAATAGAGCTGTCCCAAAGAATAACAATAAT
GCTGGAGCCCATGAAAGAACCAAAAAACTCTTCATTGCCAATCTTCCAAA
AATGAACTGTTCTGAAGATGATCTTCTCAANtgtactaactgattttacc
ctcaaaattggtgtataccacccccaaaaatgccaaatttggcaattttt
tcactgaattcctcatttttgataccattttgctgggtacgtcttattaa
cggccgttcaagagttaaatatctcaatcattttccaagtttgttaaaat
atctttcatgccttgattgaagaaaaaaatttgattttttttttactttt
gaaaaaaatgatttgaatttttttgcttccggaattttcaaaaacctNCT
GAGGAAGAAGAAATCACAGAATTTATTAGAGACCCTATTCTTGATGAAGA
ggaaatgaaaaaagtttttgttggtGGAATTTCAACAGAAAGTACTGAAG
ATGAACTAAAACAATACTTTGAAGAAAAGTGTGGCGGATCTGTTACAGAC
ACtgttattattaaaaaagaCACTGATAAGAAGAGTCATTTTGGATTTCT
GACCTTTGAAACATCAGATCTTGTTGATGAGGTCTTATTGAAAAGGGAGG
AATTGAACTTCAAAGGTAGACAATTGGATGTGAATAGAGCTGTCCCAAAG
AATAACAATAATGCTGGAGCCCATGAAAGAACCAAAAAACTCTTCATTGC
CAATCTTCCAAAAATGAACTGTTCTGAAGATGATCTTCTCAATTATTTCA
AGCACAGACATCCCAAAAAGTATGGTACC Run BLAST on NCBI protein sequence of TCONS_00049992-protein >TCONS_00049992-protein ID=TCONS_00049992-protein|Name=TCONS_00049992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
FKRGKARQSQTFRCSAFFLCVLFLRSLFPSVTFENPPSSFIYQRLRIHSR
MADTEEQVPQTEEPTTEKVESTEEEKPETEEEEITEFIRDPILDEEEMKK
VFVGGISTESTEDELKQYFEEKCGGSVTDTVIIKKDTDKKSHFGFLTFET
SDLVDEVLLKREELNFKGRQLDVNRAVPKNNNNAGAHERTKKLFIANLPK
MNCSEDDLLXCTN Run BLAST on NCBI transcript from alignment at scaffold_167:1741808..1746050+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049992 ID=TCONS_00049992|Name=TCONS_00049992|organism=Clytia hemisphaerica|type=transcript|length=4243bp|location=Sequence derived from alignment at scaffold_167:1741808..1746050+ (Clytia hemisphaerica)
CTTTAAGCGAGGGAAAGCGAGACAAAGTCAGACTTTTCGATGCAGCGCGT
TTTTTCTTTGTGTCCTTTTCCTTCGTTCACTCTTTCCATCAGTGACATTT
GAAAACCCACCTTCAAGCTTTATATACCAACGACTTCGAATACATAGCAG
GTACCACACATCTTATCTCTGTTTGGTTCGGACTAACTTATCTCAACTTA
GATTTACGTTTGACTtagtattttgttttaaaacttattttACAAATTAA
TAGCTGAATCTTCCTATACTATATATATGGGCTTTGTTCGAGTTCTTGTT
AAGCAGGATATTACTTTGTAGTAGTGTGCATCTTGGATGTTGCAATTTCT
GGGGTGACTGCCTCTGGTTAATGATTCTGCTTTGAGCACCAATGGATTCT
TTGCTTTGAGTGATCTTGAGGATAAATTTCTTCACGATCAGTCAGGAGTT
TTTGcctaatacacctttcctgCAATTTAAATTTCTCAGAACTGACCTGG
GAAAATATAAGCTCcacttttggttaaaaaaattctttgggAGGTGAACA
AACACATTTTTGCCTAACAGGGGTTAAGGTAAAAATTTCTAAGGTTTTCC
TCAAGACAATAGAAAGATTACAtatgccaaatatctcaaaccatttgatt
atccctttaatgaTACAAAAGTTAAATATTACACATGTTTTGTAATTAAT
CAATCAAATAAAAGTTGACTTTCTTAATGAGAGAATCCCTATTGGGTCAT
ttcagaatttgtctgtaacaggggggggggtggacgacACAGATTttcga
gggcaaaagtttttaccaaaattggaaatttccaaggcaagagaagaaaa
tgtatgaatttccaaggcaattgaattaaaaaaggcaaaaaaaaaaaaaa
atgcacgtcgtccgaaTGGGGGTAACAAAAATCTTCTGGAATGTCCCATT
AGTCAGGCAGCTGGGGTCACACAAAAAAGTGCTTTACTTACAAAGTTTGT
GAACAAACTTCTGTACTTCTgttgttttgaataaatatgGCCATTGTGAC
cacaaaatcatcaaccggaCACAAATTATTTACCAGGGGCGTCCGGGAAC
AATCTTGTTTTTGATGTCACAACCAAGGATAAAAAGTTATAACGCTTTGT
AATTTTGACGTCACAATTACCTTTTTTTCAGAATCAATATATCCTCtcaa
aagtcttctatatcaatttttgagagctttcgaatggtggtatgggtttt
catttttaagagtttgaattttcagattttttgcctCTCGGACCAGGTAA
AAGTAACGTTGCGGTTGTTAAAGAAACCTTTGTAACTTTTTATAGAGAAA
TTTTCACCTATGGTTACTGATCTTTTTCCTAATCTACGTTTGAAGACGCT
TcttttggtatataatatgatCATGTTTGTGAACGAAAATTTTTTAGTTA
GCTTAGGCCTATATGACATCATTTTGGGACCTGGAATATTACCGGGGACG
TCAGGTAAATAATTAGGATAGGTCTTGTTGATGATTTCTAGATATTTGAG
GTGTGTATTTTCGATTTAATTTGGTTTTGGATTGTTTGCACCCCGtccat
attttttttgtttcctcGGCTGCCTGACTATATCGGAAATTATCCCCAGC
TTAAATTTACGCTTGCTTTACTTGTTTTATTAAGAGACATATTTGAGTTT
AAGAAGCTGATATTTAGATCTGAGACAGAAGGAGAAATGCAAATCTAAGa
atttttggtggaaagaaaCTTGATGGATTTGGACAAGATATCAGTTAAAT
TAAGTTACCATCAAATTTAAGTGCGAGCAAAATTTTAATCACATGACTTA
AAATAGTTTATTCTTTTGCACAAGTTTTCTTGGCCAAAAAGTAGTTACAT
TTTTATTTATGCAGTTTCATGCCTTTTTCAACACCCTCCTCAaccaaatt
tttatgaaaaccaCTTGAAAAATCTCTCAAACTGAATATTTGTTGCATGT
GTATGAATTTTAATTGTTACATAGAAATTGTAGGTATGTAAAAATTAATG
GGAACGTTGGTTTCAATTTTTTAGGCCGGGTTTAGCTGGAATAAAATTTG
GCGGAAACACCTAAGCTATCTTGATTTCTAGATgttaaaacaacaaaatt
gaACTATTATATTCATAAATTATTTACTCCTTGGGccctaaaattttaaa
aatcccACCATTTATATGATGTTAGCTTTAAAACTCAACAAACCACCTTT
TATCAATAGTAATTCAAGCTGAATATCAGTTTTAGTCTGGCAGAACTAAA
GCACTTTTAATGAATGCTCTGTCATTTCAACAAGCAGAGATTTTCTAAGG
AAAGGAATATATACCATTGCTGCTGTGGAATAGCCGTCATTGATCTTGGT
TTCTGCACAAACAGTTAAGGATTAGGATACCTCTCCTAATTAGGAGTATC
AGGTATGTTGAATAGGAGAGCAGACACTTTGACCTAAATTTTTTCAGGTA
TTGCTTCGATCTGCGTTCGGAAAACTAAAGAAACTTTTTATTCATTGAGA
TTTGCACCAGTGACctaaatttcaagtaatttctcGGCAAGTTCCTCATT
AATTTGCCGTGCAGAGAGAAAATTTTGGGAACACgagctaaaatttgtca
ttctttcacAGAACAGCCTGATACAGTCCATATTTTTTGCGCGGGGAACA
AGCGTTTTTTTATGGTGTGGTGTGCTAATTAGcacgttttgagtggtttt
ggGCTACAGTTTTACATTCCGCCAGTCAAAAGTTCTTAAATTCAGCATAG
AATCTCACTTGCTTGTTATTTACATTTTGGAAGTGATAAGATTGCGCAAA
TGTCTCTGGTAGTTGAAAAATACAGCATTTTCAGTTTTTAGTATCTTAAT
TAGGATGttgattgctattttgtatacttttttgtaTCCAATTTAAGATA
CTCTCCTAAGTAGGTTCTGTAGGTATCATAATTCGCAATAATCCTCGACT
AACAAATATTTTCAGAGGGTTGACTGTCTATCATGGGCTAAATgagaaaa
ttctaattttataGAATGGCTGATACAGAAGAACAAGTCCCACAAACTGA
AGAACCAACCACTGAAAAGGTTGAATCAACAGAAGAGGAAAAGCCAGAAA
CTGAGGAAGAAGAAATCACAGAATTTATTAGAGACCCTATTCTTGATGAA
GAggaaatgaaaaaagtttttgttggtGGAATTTCAACAGAAAGTACTGA
AGATGAACTAAAACAATACTTTGAAGAAAAGTGTGGCGGATCTGTTACAG
ACACtgttattattaaaaaagaCACTGATAAGAAGAGTCATTTTGGATTT
CTGACCTTTGAAACATCAGATCTTGTTGATGAGGTCTTATTGAAAAGGGA
GGAATTGAACTTCAAAGGTAGACAATTGGATGTGAATAGAGCTGTCCCAA
AGAATAACAATAATGCTGGAGCCCATGAAAGAACCAAAAAACTCTTCATT
GCCAATCTTCCAAAAATGAACTGTTCTGAAGATGATCTTCTCAANtgtac
taactgattttaccctcaaaattggtgtataccacccccaaaaatgccaa
atttggcaattttttcactgaattcctcatttttgataccattttgctgg
gtacgtcttattaacggccgttcaagagttaaatatctcaatcattttcc
aagtttgttaaaatatctttcatgccttgattgaagaaaaaaatttgatt
ttttttttacttttgaaaaaaatgatttgaatttttttgcttccggaatt
ttcaaaaacctNCTGAGGAAGAAGAAATCACAGAATTTATTAGAGACCCT
ATTCTTGATGAAGAggaaatgaaaaaagtttttgttggtGGAATTTCAAC
AGAAAGTACTGAAGATGAACTAAAACAATACTTTGAAGAAAAGTGTGGCG
GATCTGTTACAGACACtgttattattaaaaaagaCACTGATAAGAAGAGT
CATTTTGGATTTCTGACCTTTGAAACATCAGATCTTGTTGATGAGGTCTT
ATTGAAAAGGGAGGAATTGAACTTCAAAGGTAGACAATTGGATGTGAATA
GAGCTGTCCCAAAGAATAACAATAATGCTGGAGCCCATGAAAGAACCAAA
AAACTCTTCATTGCCAATCTTCCAAAAATGAACTGTTCTGAAGATGATCT
TCTCAATTATTTCAAGCACAGACATCCCAAAAAGTATGGTACC Coding sequence (CDS) from alignment at scaffold_167:1741808..1746050+ >TCONS_00049992 ID=TCONS_00049992|Name=TCONS_00049992|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at scaffold_167:1741808..1746050+ (Clytia hemisphaerica)
TTTAAGCGAGGGAAAGCGAGACAAAGTCAGACTTTTCGATGCAGCGCGTT
TTTTCTTTGTGTCCTTTTCCTTCGTTCACTCTTTCCATCAGTGACATTTG
AAAACCCACCTTCAAGCTTTATATACCAACGACTTCGAATACATAGCAGA
ATGGCTGATACAGAAGAACAAGTCCCACAAACTGAAGAACCAACCACTGA
AAAGGTTGAATCAACAGAAGAGGAAAAGCCAGAAACTGAGGAAGAAGAAA
TCACAGAATTTATTAGAGACCCTATTCTTGATGAAGAggaaatgaaaaaa
gtttttgttggtGGAATTTCAACAGAAAGTACTGAAGATGAACTAAAACA
ATACTTTGAAGAAAAGTGTGGCGGATCTGTTACAGACACtgttattatta
aaaaagaCACTGATAAGAAGAGTCATTTTGGATTTCTGACCTTTGAAACA
TCAGATCTTGTTGATGAGGTCTTATTGAAAAGGGAGGAATTGAACTTCAA
AGGTAGACAATTGGATGTGAATAGAGCTGTCCCAAAGAATAACAATAATG
CTGGAGCCCATGAAAGAACCAAAAAACTCTTCATTGCCAATCTTCCAAAA
ATGAACTGTTCTGAAGATGATCTTCTCAANtgtactaactgaTTTAAGCG
AGGGAAAGCGAGACAAAGTCAGACTTTTCGATGCAGCGCGTTTTTTCTTT
GTGTCCTTTTCCTTCGTTCACTCTTTCCATCAGTGACATTTGAAAACCCA
CCTTCAAGCTTTATATACCAACGACTTCGAATACATAGCAGAATGGCTGA
TACAGAAGAACAAGTCCCACAAACTGAAGAACCAACCACTGAAAAGGTTG
AATCAACAGAAGAGGAAAAGCCAGAAACTGAGGAAGAAGAAATCACAGAA
TTTATTAGAGACCCTATTCTTGATGAAGAggaaatgaaaaaagtttttgt
tggtGGAATTTCAACAGAAAGTACTGAAGATGAACTAAAACAATACTTTG
AAGAAAAGTGTGGCGGATCTGTTACAGACACtgttattattaaaaaagaC
ACTGATAAGAAGAGTCATTTTGGATTTCTGACCTTTGAAACATCAGATCT
TGTTGATGAGGTCTTATTGAAAAGGGAGGAATTGAACTTCAAAGGTAGAC
AATTGGATGTGAATAGAGCTGTCCCAAAGAATAACAATAATGCTGGAGCC
CATGAAAGAACCAAAAAACTCTTCATTGCCAATCTTCCAAAAATGAACTG
TTCTGAAGATGATCTTCTCAANtgtactaactga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049992-exon-scaffold_167-1491911889:1741808..1741957 | TCONS_00049992-exon-scaffold_167-1491911889:1741808..1741957 | Clytia hemisphaerica | exon |
| TCONS_00049992-exon-scaffold_167-1510915933:1741808..1741957 | TCONS_00049992-exon-scaffold_167-1510915933:1741808..1741957 | Clytia hemisphaerica | exon |
| TCONS_00049992-exon-scaffold_167-1575043694:1741808..1741957 | TCONS_00049992-exon-scaffold_167-1575043694:1741808..1741957 | Clytia hemisphaerica | exon |
| TCONS_00049992-exon-scaffold_167-1491911889:1744872..1746050 | TCONS_00049992-exon-scaffold_167-1491911889:1744872..1746050 | Clytia hemisphaerica | exon |
| TCONS_00049992-exon-scaffold_167-1510915933:1744872..1746050 | TCONS_00049992-exon-scaffold_167-1510915933:1744872..1746050 | Clytia hemisphaerica | exon |
| TCONS_00049992-exon-scaffold_167-1575043694:1744872..1746050 | TCONS_00049992-exon-scaffold_167-1575043694:1744872..1746050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1741808..1746050 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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