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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047494 ID=TCONS_00047494|Name=TCONS_00047494|organism=Clytia hemisphaerica|type=transcript|length=2539bp
CGACAAgggtagtccccccccccccaggctAGGCGCTCACAAGGTAAGTC
TAACTTTCCTTGTTCCTCATCTGTCGGTGAATTTGATTCCTTCTCGTGGA
GTATTCTTTCTTTCTTGAATTTGTGCTCGATGGGTTATTTCTGAATGAAA
CGATAGATTCACCAGCAACTTCATCCGTATGTGAAAATGATTGACCAAAT
GATTTGAAAGTActtgttgtatttttttttttcttgaatttgtgCTCGAT
GAGCGGTTCCTGAACGAAACGGTAGATTCATCCGAAACGAACCCAACTTC
ATTCTTGTTTGCCAATGATTTGAAGGAACTTGTTTCATACGTTGTTACAC
CCCCAAAGACAGGACGACGTTGGTTAGAAGTGTTTTTGAAGACTTGGTCA
GCAATAAAGACAGAATGTCCAAAAGCTGACCTTCTTGAATATCTTCTTCC
TCCATCTTCGTACAGAATCTAAATTCAAAgagtaaattaattttttttaa
tgaaaggtACTGAAAACGCTAAACTGGATCAGACGATTCCatccttttca
aacaaattAACAAATCATTTATACTAATGAAATATTATACTTGAAACAAT
GTCATCAAATGACTACAGAATTCTCCATGTctgtattttccaaaaatttc
aattgcACTTGTACAACAATGGCACgcagaaaaaaactttatacTTGACA
CTACCACTAGCAGTGACATTTCTTATAATAACACTgatatttaaaagaaa
actaaTGATCGTCTTCCTCCATGCTGCCATCAAAATATGATTAGCTTACT
TTTTGTTCGACTAAGTTCAGCCTAAGTATCTTCCTTTGCCACTACGTGCT
GGATGTTAAATCCTTTTCTCTCCAACGCCAAAAAAAAATGAACGCATGGT
GATGATTATTACTGTTTTCGCCTGTGTAGGCTAGAAAGGTAATTGAAAAT
GTGTCAAAggctgagtgttgtgtaataaAACTTATGTTACGAATCTACga
atcttgaaaagaaattagCTGGGGGTTATTttccttagccccccccctga
aaaatgctgggggctggacccctctgcacactatggttATCCACTGCGCC
AACTGGCCTTAGGTTACATTTATTGGGAAATGTTTTATTCTATGTATAAA
TGGCGAAGGCCCCTTAAATGGATTATTTTCAGAAGAGGAAGTTTATGAAT
AATTAGGAAAATATAGTAGAGAGAAATTCTCTTACCTGGATAGGCGATTG
TCGAATAATGAATAGTTGACGAGTGTGCAGCAACAGCAGCGAATAACGAT
ATCaaagaaaaatgtataaaaacgACTGTATAAAAACGATTAGATTAGGT
TATTTGTAGAGAAATTAAAACTTTCCACTAGCTTTGGGTGCTATTTTTTA
CAGGCTTTTTGATAAGCTTACTTTGTTGTTCGATTTTGAGCTTTTTCTCG
TAAACTTCACCCTCGATCACCTTTTTTTCATCGTTCAATGACAGtgagtt
ttgaaaaatcgaGGCTTACCTGTTCGCCATTCTCAAGGATTGGGTATATT
TCAATAAGATTTTTGACGGATATATGTGATCCTTAATCAGTTTTGCACGT
TGATCGTGTAGGGTAAGCTCCAAACGAGTCGCAATAAGCTCAgtctttct
ttttgctttttgagtttcaatATGCTTTGAAACCGAATGTTAATCTTCTC
CAGCAGGGATATTTGGGAGATCAATCCCCaaagtttttttggatttcttc
aGCATCACGAAATAATAACAAAAGAGAGATATGTTACAAAAACAGAGGTA
CAAAAACACTAAAGACTATGTATTTACAAGAGTAGGAAAGTATATTTACA
AAAAACAGAGCAATAAAAAACACTTAACACTTTCATCGTCCGAGGACACA
ACAATTACTACTTCGTCATCTACAAAGTTTTCTGGTGAGCATCATCGTCA
GATTCGTCGTCTGATATTATAATGGGTGGTACTATTGGCATGTCTTCCAA
AAAATTGTCCAAGATCAAATTGTTTATAATCATCTCATCCACCACGTGGT
TCACAAAATGTTCGTACATTTCAAAGACATTATTCAAATCGATATCAATG
ATGGCAAATGGAAACGTCAAGTCTAGAATGAAATCACCTAATAGTTAATA
AATAATAGTCTAAATTAAACTAGTTCACGCTCGATCATCTTCTTTTTATC
GGTTAGTTGGCTGACAGTGAGTTTTGAAGAATCGAGACACTCTAACGCTT
CCATAAGGTCTCTCTTCTTCAACCAGTTTGTTCTTCTCCGTCAAATCTTC
GATGATAAAACTCGATTCTGAAAGCTTCTGACGAAGGATATCGTGCGATA
AATCTTCCATTGAGGTGTCATCAGAGCTTGCTTTAGGGAAGGTTCTGGGT
GTTTGATCAGTCTCAAGGGCACGATGGATGATCGAGTTTGTATaaagaaa
ttaaagattttagttTGAAGGTTTTTGCAAAGttcatagttatgaatttt
tagCCTTGAATCGTCCGTAAGAATCAAGAAAGAATTCAC Run BLAST on NCBI transcript from alignment at scaffold_13:180146..182684- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047494 ID=TCONS_00047494|Name=TCONS_00047494|organism=Clytia hemisphaerica|type=transcript|length=2539bp|location=Sequence derived from alignment at scaffold_13:180146..182684- (Clytia hemisphaerica)
CGACAAGGGTAGTCCCCCCCCCCCCAGGCTAGGCGCTCACAAGGTAAGTC
TAACTTTCCTTGTTCCTCATCTGTCGGTGAATTTGATTCCTTCTCGTGGA
GTATTCTTTCTTTCTTGAATTTGTGCTCGATGGGTTATTTCTGAATGAAA
CGATAGATTCACCAGCAACTTCATCCGTATGTGAAAATGATTGACCAAAT
GATTTGAAAGTACTTGTTGTATTTTTTTTTTTCTTGAATTTGTGCTCGAT
GAGCGGTTCCTGAACGAAACGGTAGATTCATCCGAAACGAACCCAACTTC
ATTCTTGTTTGCCAATGATTTGAAGGAACTTGTTTCATACGTTGTTACAC
CCCCAAAGACAGGACGACGTTGGTTAGAAGTGTTTTTGAAGACTTGGTCA
GCAATAAAGACAGAATGTCCAAAAGCTGACCTTCTTGAATATCTTCTTCC
TCCATCTTCGTACAGAATCTAAATTCAAAGAGTAAATTAATTTTTTTTAA
TGAAAGGTACTGAAAACGCTAAACTGGATCAGACGATTCCATCCTTTTCA
AACAAATTAACAAATCATTTATACTAATGAAATATTATACTTGAAACAAT
GTCATCAAATGACTACAGAATTCTCCATGTCTGTATTTTCCAAAAATTTC
AATTGCACTTGTACAACAATGGCACGCAGAAAAAAACTTTATACTTGACA
CTACCACTAGCAGTGACATTTCTTATAATAACACTGATATTTAAAAGAAA
ACTAATGATCGTCTTCCTCCATGCTGCCATCAAAATATGATTAGCTTACT
TTTTGTTCGACTAAGTTCAGCCTAAGTATCTTCCTTTGCCACTACGTGCT
GGATGTTAAATCCTTTTCTCTCCAACGCCAAAAAAAAATGAACGCATGGT
GATGATTATTACTGTTTTCGCCTGTGTAGGCTAGAAAGGTAATTGAAAAT
GTGTCAAAGGCTGAGTGTTGTGTAATAAAACTTATGTTACGAATCTACGA
ATCTTGAAAAGAAATTAGCTGGGGGTTATTTTCCTTAGCCCCCCCCCTGA
AAAATGCTGGGGGCTGGACCCCTCTGCACACTATGGTTATCCACTGCGCC
AACTGGCCTTAGGTTACATTTATTGGGAAATGTTTTATTCTATGTATAAA
TGGCGAAGGCCCCTTAAATGGATTATTTTCAGAAGAGGAAGTTTATGAAT
AATTAGGAAAATATAGTAGAGAGAAATTCTCTTACCTGGATAGGCGATTG
TCGAATAATGAATAGTTGACGAGTGTGCAGCAACAGCAGCGAATAACGAT
ATCAAAGAAAAATGTATAAAAACGACTGTATAAAAACGATTAGATTAGGT
TATTTGTAGAGAAATTAAAACTTTCCACTAGCTTTGGGTGCTATTTTTTA
CAGGCTTTTTGATAAGCTTACTTTGTTGTTCGATTTTGAGCTTTTTCTCG
TAAACTTCACCCTCGATCACCTTTTTTTCATCGTTCAATGACAGTGAGTT
TTGAAAAATCGAGGCTTACCTGTTCGCCATTCTCAAGGATTGGGTATATT
TCAATAAGATTTTTGACGGATATATGTGATCCTTAATCAGTTTTGCACGT
TGATCGTGTAGGGTAAGCTCCAAACGAGTCGCAATAAGCTCAGTCTTTCT
TTTTGCTTTTTGAGTTTCAATATGCTTTGAAACCGAATGTTAATCTTCTC
CAGCAGGGATATTTGGGAGATCAATCCCCAAAGTTTTTTTGGATTTCTTC
AGCATCACGAAATAATAACAAAAGAGAGATATGTTACAAAAACAGAGGTA
CAAAAACACTAAAGACTATGTATTTACAAGAGTAGGAAAGTATATTTACA
AAAAACAGAGCAATAAAAAACACTTAACACTTTCATCGTCCGAGGACACA
ACAATTACTACTTCGTCATCTACAAAGTTTTCTGGTGAGCATCATCGTCA
GATTCGTCGTCTGATATTATAATGGGTGGTACTATTGGCATGTCTTCCAA
AAAATTGTCCAAGATCAAATTGTTTATAATCATCTCATCCACCACGTGGT
TCACAAAATGTTCGTACATTTCAAAGACATTATTCAAATCGATATCAATG
ATGGCAAATGGAAACGTCAAGTCTAGAATGAAATCACCTAATAGTTAATA
AATAATAGTCTAAATTAAACTAGTTCACGCTCGATCATCTTCTTTTTATC
GGTTAGTTGGCTGACAGTGAGTTTTGAAGAATCGAGACACTCTAACGCTT
CCATAAGGTCTCTCTTCTTCAACCAGTTTGTTCTTCTCCGTCAAATCTTC
GATGATAAAACTCGATTCTGAAAGCTTCTGACGAAGGATATCGTGCGATA
AATCTTCCATTGAGGTGTCATCAGAGCTTGCTTTAGGGAAGGTTCTGGGT
GTTTGATCAGTCTCAAGGGCACGATGGATGATCGAGTTTGTATAAAGAAA
TTAAAGATTTTAGTTTGAAGGTTTTTGCAAAGTTCATAGTTATGAATTTT
TAGCCTTGAATCGTCCGTAAGAATCAAGAAAGAATTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047494-exon-scaffold_13-1575043694:180146..182684 | TCONS_00047494-exon-scaffold_13-1575043694:180146..182684 | Clytia hemisphaerica | exon |
| TCONS_00047494-exon-scaffold_13-1510915933:180146..182684 | TCONS_00047494-exon-scaffold_13-1510915933:180146..182684 | Clytia hemisphaerica | exon |
| TCONS_00047494-exon-scaffold_13-1491911889:180146..182684 | TCONS_00047494-exon-scaffold_13-1491911889:180146..182684 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:180146..182684 - |
Blast
The following BLAST results are available for this feature:
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