TCONS_00004641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004641
Unique NameTCONS_00004641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004641 ID=TCONS_00004641|Name=TCONS_00004641|organism=Clytia hemisphaerica|type=transcript|length=3702bp
aatctcaTTTCATTATATATTGACATTGATTACTCATGCCTACTTTATTC
TGCTCTTGCAGGTTGGGAGCTCGATGacatatagaaaatttaaaaaaagt
tcaatataATGGAACAAATCAGCGATGGTATCCGCAAAAGGCGGAGTGTG
GCAAAGGTTTTTAAGGAGCTTGATGCATTTCCAAAAGTACCTGAAGATTA
CCAAGAGACCAGTACCAGTGGAGGGACTGTATCTATACTGGTGTTTCTAT
TTATTGGAATATTGATAGTATCAGAATTCATTTACTATCTGGATACTGAT
GTCAAATACCAGTATGAAGTTGATAAAGATTCTGAACACAAAATGAGAAT
TAATATTGACATGACAGTTGCAATGGAATGTAATGATATTGGAGCTGATG
TGTTGGACGTTGCTGGAGCTAGCATATCTACTGATGAGCATTTAAAAATG
GAACCCACCTATTTTAAAATGAGCAACAACCAATTAACGTGGTGGCAAGC
TTTTCGCAAGTTCCGTCGATTTGATGAAGGCTTTCGATCATTAAGAGAAA
TCAACCAAATGTCACTTATTTTTGGACATGTATTACCAACCTATATTCCA
GAAATTGATAAGAAGGAATTCGCAGATCGAGAACCAGACGCTTGCCGTAT
TTACGGGAATGTTGAAGTCAACAAAGTTGCAGGTAATTTTCATGTGACTG
CTGGGAAATCCATACCTCACCCACGTGGGCATGCTCACTTAAGCTCCCTT
GTTTCGGAACTTAATTACAATTTTTCACACCGTATTGATTTGTTATCATT
TGGTGACCCACATCCAGGCTTGATTAATCCAATGGATGGTGATCTACAAA
TTGCAGAGAAGGGCTATCATATGTTTCAATATTACATTAAAATCGTTCCA
ACTTATATTCAAACCGTACGCGAAGATATGAAAGCAAACCAATTCTCAGT
CACGCAACGTTCTCGACCTATTGACCATACAAAAGGCTCCCATGGTGTCC
CTGGTATATTTTTCAAGTATGATTTCAATGCTGTCAGCGTTCGTATCAAA
GAGGAACGTCGTGATTTCAGCCAGTTTTTAGTTCGTCTATGTGGTATTAT
CGGTGGTGTGTTTGCAACGTCAGGGATGCTTCATTCGTTAGTTGGATTTT
TAGCAGATTCGATTATGTGTCAGATAAAGAAACAGAGAGCTAGTGCTATG
AAAGTTCCCATTAGCCAACCGCTGATGAATCCAGCTCAACAGCAGAGTGG
TGGTGGATTAAGTCAACAAAACCCTCAAGTGTCACTGCTACCTCAAGTAC
AATAGTAGTATTTATaatttgttcaatattttttgggtAATTTGTTTAAA
ATGTACCAATTGTTGGCAGCATTTGCTAAAccgtatacatgttttttata
agcattgaacTTATATGCATATAGGCTCAGATATGAAAcaaatttaagca
tatgctaagcattgCTTCAGCCTacatttttccgattttggctgtttttg
cTGGCGGGAATTTCAcagattttcggaatttccctAGATATATATCAtag
tgtcccccccccccccctttataaagaaaaaaaagaggggggaggtttaa
aaaaatcaagaatttggtggggggaacaaaccctggaggacactatgtat
ATATTAGATATTAGCATCCATCAATCACGCATTTTTCAGCCTACTTGTCA
ATCTATTCTCTCAATCAAGAATAGGCAGcatagtgggcacccccccccct
ttaaaaaggggggtttgagaattttactgaatttaaaagaagggaggctt
gtgaaaatttcaaataaaaggggtggcttggacaaaaagaggggagttaa
ttttttaagggggggggcttGGAAGATTTGGCAATTTGCAAAAGAGTTTC
TGCCATCAGATTCATATTATTGTATTCTTCATTTTAATAACCTTGGAATA
TAGTTAGAGATTGTAAGAGTTTGTGCGTAAAAGGtcaaaaaaaagagggg
ggttgaaTAAAAAGAGGGGAGTtgaggaattttcatttttaagagggGGG
TTGAGCTAAAAAAGGAGGGTGCCATTTTTAAGAGGGGGGCTTGATATCCC
TCTGCCCACTATGggcagtttttgttttttctatgcttataaaaaacatg
cacTGATTCTCCGAAGCATTCCTTGTAGATTGGATTCACGAGTTTCAGCA
AATGCGTGAAAGAAATGACATAACTGGTTGTTTCCATATTGAAATCGACC
AATTCTAATTTTTATTGGAGTTAGCGTTGGGTTTTAACTTGTGATTCAAT
TACCCAAATGATATTGAACGTTGGAACTAGGGCGTTTTTATATATTCTAT
TAGTCTTGGATTTTGGTTTAATATATTATTTTGGCACATTTTATGACCTT
GACTATTtagaatttgatgtttttttgtgtttctttttcaaattctacGA
ACTTTATATACTAAACACTACCTTTGGGATGcacttatttttcattggct
tATTGTAATCTACAAAATCAGATTTCGACGATGTATCTCCCGAGCCAATA
TGTTTTACAGGCCCAGTTTTTGCGCAAAGAAGTCCCTCACAAATATGAAA
ATCCGTGTCAAAAATCAAGTCTGACACATGACGTAAGCGAGACTCACGTT
GGAAAAACGTAAGACTACGTAATACACACCTGCCTAAGCTGGTTAAGGCA
AAACTCGAAGTACTCGTAACTCATGAACCAATGAGTTTCAGAACCCCAAA
TTGACACGCATTTTCATATTTGTGAGGggcttctttgtgcaaaatttggg
CCTGTAAAACATATTGGCTCGGGAAATACaatgattttaagttttttcaa
aaagggtTTGTAGAGTCCCTTTCGTGATTTTACGTTATTCCGTCAGAGCT
GCCGTTAACGACCTTTTCAAATgttaaaatttggcacagaacAGCGTCTT
ATGGATGTCgaaagtttggtttgaaataatCAATTCCTTCGAGAGTCATT
AGCAAattccgtagatttgtaatttgcggaatcagTTCGGAAATAAAAGT
TTTTCTGCCGTAACTTCCGTTTACGTAGGTTATaagagttgatttttttt
gtgaaggtGCATCTGTTAGTTGGTAATATGCATGCtaaatttggttgaaa
aatattaattggTTGGAAAGATAAAGGCGGaatcttttttattggcatAA
GCAAACAAGAATAGTAATTCTAAACGATTTTCCTtgcatttctttttctt
tgggaAGATTACTAAGAAAAGCGGAAATTTTTAAGCCCTTTTATTTCGGG
CTAAAAGCTCtgtattcattttttcaaattttcactccTAAGTATCATTA
CTTCTTGTTAATATAGTTGGCGTTTCAGTAATGTTTATATATTTAACTTT
CAAAAGTTGTGATTTTATGCTTCAAAATTTGAGCCACCACTGACAGTTTT
GATATCGTGTGGATACTTTTTCTATGAATGAGTACATCTTCCAGTTCTAA
TGAGTAAAAGGAACCGTTGATCCTATTCTGAAACCCacccatttttgaaa
tttacattGTTTCCTCCATAAATGAttttatgttgttgtttttttggaat
atATTTGGTCTAATATTAGTTAGTTTATAATGTAAAATTTCTCCTCCCTT
TGAATTTTTAAGTGTAAATTATTTAACAACTAGGAAAATATTGTTTCGTA
AA
Run BLAST on NCBI

protein sequence of TCONS_00004641-protein

>TCONS_00004641-protein ID=TCONS_00004641-protein|Name=TCONS_00004641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MEQISDGIRKRRSVAKVFKELDAFPKVPEDYQETSTSGGTVSILVFLFIG
ILIVSEFIYYLDTDVKYQYEVDKDSEHKMRINIDMTVAMECNDIGADVLD
VAGASISTDEHLKMEPTYFKMSNNQLTWWQAFRKFRRFDEGFRSLREINQ
MSLIFGHVLPTYIPEIDKKEFADREPDACRIYGNVEVNKVAGNFHVTAGK
SIPHPRGHAHLSSLVSELNYNFSHRIDLLSFGDPHPGLINPMDGDLQIAE
KGYHMFQYYIKIVPTYIQTVREDMKANQFSVTQRSRPIDHTKGSHGVPGI
FFKYDFNAVSVRIKEERRDFSQFLVRLCGIIGGVFATSGMLHSLVGFLAD
SIMCQIKKQRASAMKVPISQPLMNPAQQQSGGGLSQQNPQVSLLPQVQ
Run BLAST on NCBI

transcript from alignment at sc0000047:581289..599902+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004641 ID=TCONS_00004641|Name=TCONS_00004641|organism=Clytia hemisphaerica|type=transcript|length=18614bp|location=Sequence derived from alignment at sc0000047:581289..599902+ (Clytia hemisphaerica)
aatctcaTTTCATTATATATTGACATTGATTACTCATGCCTACTTTATTC
TGCTCTTGCAGGTTGGGAGCTCGATGGTAAgatcaatttccatttttaga
ttcattcaattttttacaTAACAGGCTTTGTAGGTAAAAGGTTTTACATT
TTAGTACTATAGGCTAGGGATCTTcgcttcgacaaaaaactttcgaattt
tttatcggcattgggccgataagggggtggggggtccaactacataccga
taaaaaaacaagtattgagacgaaaatcctttcagccaatttctttctga
tttcgtccacaaactccactgaaagcatatgatttcacttgctttcaccA
GGACCctctgccgacgcaccggacttataacgaacaccggacacgcgaaa
gtccggtgtaaaataagaattttttttaccaccggacaatctctacaccg
gacttaaggaagtcggatgtctgGTGTCGGAGAAGGtaattttttccacc
ggacaatccacgtgcgtttgcgtagggtaaaatggcgaaatgcgaaaatc
gaatttggcaaaaaatttttgaaaaatgaccctacaagatttgactatat
ctttttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNaatcaaaacaccggacatgaccagtctgctctggtgcgtccggt
gtttctttattttttgtttcttaaatgtccagcgtccaaaattccctcta
tgcaacaccggactgacaccggacttattgcgtccggtgtagcaaaagga
tactttttgccacctgacaaatacaccggacagtccggtgcgtcggcagg
gtcctctttCACCTTTGCGCGCAAATTCGCAGCTTTAAGAGTACAGTTTT
GAActagctttgataaaaaactcttttttcattggccagcgcgctgcctt
ttccttcgaaatgttgcgacttcatcccgtcattttaactttcgttttga
ttaacaatgcgggtatgaacaaactcaatgttggtgcacAAATAGATGAC
GATGACGGGTGGGAAGGCGATGGCGGACAAGATTGGAGGAAATTGTGTTT
TCGAAGATGTAATAgttggatttgaaaaatttcggccgataagagcaagg
ggggagggggtctgaagcttatcggcccaatgccgataaaaaattcgaaa
gttttttgtcgaagaccccttatattatattttaggtttatttttcattt
cttctaTATAAAGTTCTAAAAATGACTCACGCTTCTGGGCTACTTGGcga
ttttgaacttgaaaatgtCCTGACCATGACCCAAACAAGCTGGGGAATGT
TAGATGTGTGTCCAGACCAGgtttcagtgaggctggaacatcgatttttg
aggattacgattttaccagctttttacctatttttgcctcgctaacccaa
atctcgcaacctcttcaTCTTAAAGGATGATCGAAATTacagtttttcag
cgttccgaaaaaaacacaaagcagaaattttttcatcttcacaggatcga
ttgtcaacaacaaaatacatcttttggtctttgggtttggttctgacgtt
tttccttcaaagaatatcggtcactttccttttccccttgagcgcgcgag
aaaaaaatgattagctcgcattctcgcgcgggcgaataaagatgaggcgg
caatcttgcactgagggtgctacttagtttccgccctattttgcgcccac
caTAGAATGGTCCagatacgggggtattccaaatgataaatgatgtcgtt
ctgtaagtgttttatTTTCTGATAGATACAAATAGAATATTGAAtactat
taacttatttatttaaatatttttgagcccaaatttaaatatctggtcta
ataaaaaacaaatgacagcagttctgtttttccctCAAACCCcggggaaa
agtttttttgccgactcaactattttacaaatttcggaaaagaactccca
taggaattccgattcataacccgattggttcatttcagaacagcttcaaa
aaagtcataatggcagataattttaaaagtttctctgagtaaatgtgtgt
aatttattgatgttgatggcttgctgattctttaaagaaaaaagataaca
ggtatagctttttctaatcctggaatatcgagggtCCAGCTACACTGGGT
TTTGGGggctaaaatctaaaattttatgGCTCAAACTTGGTCAATAATGT
TAATGATcacacaagtgttacgcgtaagccaaatcgcgtattacaaACAA
CCTTTAAATTGctgagtacaggagaaaaaaatcgaaattcaaaatggcgg
ccaagcaccaagcccacgctgataactatcaaaaatcttagtttttcaat
cagctattgcaacTTAttataaatcaatgaaataatttgaaataaaaagt
aaacaaaccttgaacctttcatgaatccaaatgaataaaagtattcatct
aaagtgaagattacatttcaaataaaacgatttccaaaccaacctaaagt
cagtctgccaactaaaaatttctctacGGGGTCACTGGCGCGCGGCAagg
actttagattccaattcttgtataggctgcaactacactgccaaatgatc
tgtattacaaatacttccaaatgggtccataagttaagaaaatgaaatta
tcatttaacacaggggttttgtttttaaaaacaaacttcaaaataaaatt
gttaacgaacttgttacttaaaatatctcTTACTTGCATaattatttatg
atataacacccctttcttaaataaatggcctcttaaaaaaaaaaataaaa
aaaatgtagacacaactttaatccgacgaaatgaagcgttttcattggtc
taaaatcacggatggtcacgttaccagaatttttatccagggaaatgctg
TGGCGGCTattttttgctttagtgaggtcgaccattttgttattttggtt
tgagcgggcaaaatttctgtacaaaccaaaatatggctttgttggaatac
cggttgaaacacttgtgatcAGGCCGAAAGACTATAAAACTTTTGCTATT
TGTGATATATACCATTTTATTTATCTATGATTCAACACGATAGCCTAATA
GTAGATTAATTTGCACGCATTTAATTTTTATCTTACTgtgtttttgttta
tcttactgtgtttttgtttatctttttgtgtttttttaccctttttgGTT
TCCAAGGGTCAtttttaaggttaaattttatttttgtctgaTGAAAACTT
AAGATTGCTGAAAGATGCAACGATGCACTTTTTTCCCTGCTctgttttat
ttattatttcttttattttcttaaaattattacatctaaagtctgtccaa
atataattggcagtggaaacaagaatgcctgtaacttttgatagtcaaat
ataattatggatttttttttgcttgtttcagagaatcaaaagagctatat
ttgaatgtatttttggttgaaaaattcgcgatttttagcggttaaatttg
cgattacaaaaatttccataattatatttgactatcaaaagttacaggca
ttcttgtttccaccgccaattatatctggacagactttaatcacatacac
gctttttttttatgagaatacactttataagaatgtccatgatgaaaatg
gccaaaaaactaagaatatgctaagaatatcaccatcatggaatttggct
atTGAAGCtcagaatgccattttaagagcattttaaaaaattataaatta
tcctCAAGTATGGCTCgctccttttacaaaagtgccatttcatgcttgag
acgtatgtactaaatgttaaatctagtatgaattaggatcctaacctaag
aatatactgtaagaatattttaggatgattttcccaaaaaagttaagaat
atccatgatgaaatggatttacaccattcttataaaaaaaaagcgNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaagttgg
tctaatctcgacatccgtcttctaatttcgacacccttctttagagatag
gaataatatgaaatttAGAATCAGTGATTGAAAAAAGACTTATTCTCcct
taccactaagcaaagaaaaataatttcgaccttttttttatttttcagct
ctagaaaagggtgtcgaatttagacgagggatgtcgatattagaccaagt
tacggtataaatttcagctgataaaaagggtgtctgaattagaggagggg
tgtcgacattagaccaagttacagtaATCAAGACATCGTGGAAGGCGAGT
GCAATGTTTATTACTTTTACAAATAAGATTCTCTCAACAAATTGAGAAAA
CACTTGGTGGTGTTTTAAGCCTATTTAAGACCTATTTCgtcaattaaaaa
tttttccaggGGCTCCTCAGACCCCAGTTCTTTTTTCTTGCTACGCTCAA
AAATTCGCTGACCAGTTCACAATTCTTTATTTACAGCACTGCATAACGCc
tagcaaaatttcttttgaatatgGGGTCCATTGGCATGGAGTACAGCGCT
TATTAAAAAAAANagcaaaatttctttttaatgtgGGGTCCATTGGCATG
GAGTACAGTGCTTATTAAAAGAAATTATTCAGAGGATTTTGTTGTATCTT
CTGCCGTGCTCCTTGGAAATAATAGACCTTTAGGTAAACGGGACAGCCAG
acagtctattgaataacaaattactacaGCATTCATTACTAGTCCTTCAC
CAGATACATTATTTTGATTACTGTATTCAGATTAACAGCCAGTCTAGAAA
GAAGGTGATATGTATGCCTGATTTTTTTTGGTACAGCCAACGAATATGCT
TTGTTTTCAGACTGGGATAACAGGTGTGTCGAAAAGACAGATCAATTAGA
TGACGTTATCATAAAGAAAGTTTATGCTGTACTGTAGTGATTGGTTATGC
AATATACTGCCATAATTGTCTAAATGACTATTCGAACCCAAGattgtaaa
tttaaattttctgcTGTAAGTTAGTGCTAACGTGGGTACCTTTATCGATT
TCTgtaatttggaaaaaaaaaaaaaacctgaatGGGTTCCTTGATCCATT
GATCAAATGAAACTTTTAAATCAGATTTATAGAAAAACAAGAATTTTGGC
AGTGACAGAATGAGATTCAACACCCAGATTCTGGCACCCACCTCCTTCAC
TAAGATTTTCCTGCCTTTTCCAGACTTTTTCAGACTTTTCCGCTATTATC
TTTATTCTTTATATTTAtattagcttttttatttttttttcagacatata
gaaaatttaaaaaaagttcaatataATGGAACAAATCAGCGATGGTATCC
GCAAAAGGCGGAGTGTGGCAAAGGTTTTTAAGGAGCTTGATGCATTTCCA
AAAGTACCTGAAGATTACCAAGAGACCAGTACCAGTGGAGGGACTGTATC
TATACTGGTGTTTCTATTTATTGGAATATTGATAGTATCAGAATTCATTT
ACTATCTGGATACTGATGTCAAATACCAGTATGAAGTTGATAAAGATTCT
GAACACAAAATGAGAATTAATATTGACATGACAGTTGCAATGGAATGTAA
TGATATTGGAGCTGATGTGTTGGACGTTGCTGGAGCTAGCATATCTACTG
ATGAGCATTTAAAAATGGAACCCACCTATTTTAAAATGAGCAACAACCAA
TTAACGTGGTGGCAAGCTTTTCGCAAGTTCCGTCGATTTGATGAAGGCTT
TCGATCATTAAGAGAAATCAACCAAATGTCACTTATTTTTGGACATGTAT
TACCAACCTATATTCCAGAAATTGATAAGAAGGAATTCGCAGATCGAGAA
CCAGACGCTTGCCGTATTTACGGGAATGTTGAAGTCAACAAAGTTGCAGG
TAATTTTCATGTGACTGCTGGGAAATCCATACCTCACCCACGTGGGCATG
CTCACTTAAGCTCCCTTGTTTCGGAACTTAATTACAATTTTTCACACCGT
ATTGATTTGTTATCATTTGGTGACCCACATCCAGGCTTGATTAATCCAAT
GGATGGTGATCTACAAATTGCAGAGAAGGGCTATCATATGTTTCAATATT
ACATTAAAATCGTTCCAACTTATATTCAAACCGTACGCGAAGATATGAAA
GCAAACCAATTCTCAGTCACGCAACGTTCTCGACCTATTGACCATACAAA
AGGCTCCCATGGTGTCCCTGGTATATTTTTCAAGTATGATTTCAATGCTG
TCAGCGTTCGTATCAAAGAGGAACGTCGTGATTTCAGCCAGTTTTTAGTT
CGTCTATGTGGTATTATCGGTGGTGTGTTTGCAACGTCAGGGATGCTTCA
TTCGTTAGTTGGATTTTTAGCAGATTCGATTATGTGTCAGATAAAGAAAC
AGAGAGCTAGTGCTATGAAAGTTCCCATTAGCCAACCGCTGATGAATCCA
GCTCAACAGCAGAGTGGTGGTGGATTAAGTCAACAAAACCCTCAAGTGTC
ACTGCTACCTCAAGTACAATAGTAGTATTTATaatttgttcaatattttt
tgggtAATTTGTTTAAAATGTACCAATTGTTGGCAGCATTTGCTAAAccg
tatacatgttttttataagcattgaacTTATATGCATATAGGCTCAGATA
TGAAAcaaatttaagcatatgctaagcattgCTTCAGCCTacatttttcc
gattttggctgtttttgcTGGCGGGAATTTCAcagattttcggaatttcc
ctAGATATATATCAtagtgtcccccccccccccctttataaagaaaaaaa
agaggggggaggtttaaaaaaatcaagaatttggtggggggaacaaaccc
tggaggacactatgtatATATTAGATATTAGCATCCATCAATCACGCATT
TTTCAGCCTACTTGTCAATCTATTCTCTCAATCAAGAATAGGCAGcatag
tgggcacccccccccctttaaaaaggggggtttgagaattttactgaatt
taaaagaagggaggcttgtgaaaatttcaaataaaaggggtggcttggac
aaaaagaggggagttaattttttaagggggggggcttGGAAGATTTGGCA
ATTTGCAAAAGAGTTTCTGCCATCAGATTCATATTATTGTATTCTTCATT
TTAATAACCTTGGAATATAGTTAGAGATTGTAAGAGTTTGTGCGTAAAAG
GtcaaaaaaaagaggggggttgaaTAAAAAGAGGGGAGTtgaggaatttt
catttttaagagggGGGTTGAGCTAAAAAAGGAGGGTGCCATTTTTAAGA
GGGGGGCTTGATATCCCTCTGCCCACTATGggcagtttttgttttttcta
tgcttataaaaaacatgcacTGATTCTCCGAAGCATTCCTTGTAGATTGG
ATTCACGAGTTTCAGCAAATGCGTGAAAGAAATGACATAACTGGTTGTTT
CCATATTGAAATCGACCAATTCTAATTTTTATTGGAGTTAGCGTTGGGTT
TTAACTTGTGATTCAATTACCCAAATGATATTGAACGTTGGAACTAGGGC
GTTTTTATATATTCTATTAGTCTTGGATTTTGGTTTAATATATTATTTTG
GCACATTTTATGACCTTGACTATTtagaatttgatgtttttttgtgtttc
tttttcaaattctacGAACTTTATATACTAAACACTACCTTTGGGATGca
cttatttttcattggcttATTGTAATCTACAAAATCAGATTTCGACGATG
TATCTCCCGAGCCAATATGTTTTACAGGCCCAGTTTTTGCGCAAAGAAGT
CCCTCACAAATATGAAAATCCGTGTCAAAAATCAAGTCTGACACATGACG
TAAGCGAGACTCACGTTGGAAAAACGTAAGACTACGTAATACACACCTGC
CTAAGCTGGTTAAGGCAAAACTCGAAGTACTCGTAACTCATGAACCAATG
AGTTTCAGAACCCCAAATTGACACGCATTTTCATATTTGTGAGGggcttc
tttgtgcaaaatttgggCCTGTAAAACATATTGGCTCGGGAAATACaatg
attttaagttttttcaaaaagggtTTGTAGAGTCCCTTTCGTGATTTTAC
GTTATTCCGTCAGAGCTGCCGTTAACGACCTTTTCAAATgttaaaatttg
gcacagaacAGCGTCTTATGGATGTCgaaagtttggtttgaaataatCAA
TTCCTTCGAGAGTCATTAGCAAattccgtagatttgtaatttgcggaatc
agTTCGGAAATAAAAGTTTTTCTGCCGTAACTTCCGTTTACGTAGGTTAT
aagagttgattttttttgtgaaggtGCATCTGTTAGTTGGTAATATGCAT
GCtaaatttggttgaaaaatattaattggTTGGAAAGATAAAGGCGGaat
cttttttattggcatAAGCAAACAAGAATAGTAATTCTAAACGATTTTCC
TtgcatttctttttctttgggaAGATTACTAAGAAAAGCGGAAATTTTTA
AGCCCTTTTATTTCGGGCTAAAAGCTCtgtattcattttttcaaattttc
actccTAAGTATCATTACTTCTTGTATATATAGTNNNNNNNNNNNNNNNN
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TGGAACTCAAAAACAGTGTCAAACCTTTTTCACCACCAAGGTGGGGGTAC
ATGCCCCATATTGCCTGGACTAATATAGTTGGCGTTTCAGTAATGTTTAT
ATATTTAACTTTCAAAAGTTGTGATTTTATGCTTCAAAATTTGAGCCACC
ACTGACAGTTTTGATATCGTGTGGATACTTTTTCTATGAATGAGTACATC
TTCCAGTTCTAATGAGTAAAAGGAACCGTTGATCCTATTCTGAAACCCac
ccatttttgaaatttacattGTTTCCTCCATAAATGAttttatgttgttg
tttttttggaatatATTTGGTCTAATATTAGTTAGTTTATAATGTAAAAT
TTCTCCTCCCTTTGAATTTTTAAGTGTAAATTATTTAACAACTAGGAAAA
TATTGTTTCGTAAA

Coding sequence (CDS) from alignment at sc0000047:581289..599902+

>TCONS_00004641 ID=TCONS_00004641|Name=TCONS_00004641|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at sc0000047:581289..599902+ (Clytia hemisphaerica)
ATGGAACAAATCAGCGATGGTATCCGCAAAAGGCGGAGTGTGGCAAAGGT
TTTTAAGGAGCTTGATGCATTTCCAAAAGTACCTGAAGATTACCAAGAGA
CCAGTACCAGTGGAGGGACTGTATCTATACTGGTGTTTCTATTTATTGGA
ATATTGATAGTATCAGAATTCATTTACTATCTGGATACTGATGTCAAATA
CCAGTATGAAGTTGATAAAGATTCTGAACACAAAATGAGAATTAATATTG
ACATGACAGTTGCAATGGAATGTAATGATATTGGAGCTGATGTGTTGGAC
GTTGCTGGAGCTAGCATATCTACTGATGAGCATTTAAAAATGGAACCCAC
CTATTTTAAAATGAGCAACAACCAATTAACGTGGTGGCAAGCTTTTCGCA
AGTTCCGTCGATTTGATGAAGGCTTTCGATCATTAAGAGAAATCAACCAA
ATGTCACTTATTTTTGGACATGTATTACCAACCTATATTCCAGAAATTGA
TAAGAAGGAATTCGCAGATCGAGAACCAGACGCTTGCCGTATTTACGGGA
ATGTTGAAGTCAACAAAGTTGCAGGTAATTTTCATGTGACTGCTGGGAAA
TCCATACCTCACCCACGTGGGCATGCTCACTTAAGCTCCCTTGTTTCGGA
ACTTAATTACAATTTTTCACACCGTATTGATTTGTTATCATTTGGTGACC
CACATCCAGGCTTGATTAATCCAATGGATGGTGATCTACAAATTGCAGAG
AAGGGCTATCATATGTTTCAATATTACATTAAAATCGTTCCAACTTATAT
TCAAACCGTACGCGAAGATATGAAAGCAAACCAATTCTCAGTCACGCAAC
GTTCTCGACCTATTGACCATACAAAAGGCTCCCATGGTGTCCCTGGTATA
TTTTTCAAGTATGATTTCAATGCTGTCAGCGTTCGTATCAAAGAGGAACG
TCGTGATTTCAGCCAGTTTTTAGTTCGTCTATGTGGTATTATCGGTGGTG
TGTTTGCAACGTCAGGGATGCTTCATTCGTTAGTTGGATTTTTAGCAGAT
TCGATTATGTGTCAGATAAAGAAACAGAGAGCTAGTGCTATGAAAGTTCC
CATTAGCCAACCGCTGATGAATCCAGCTCAACAGCAGAGTGGTGGTGGAT
TAAGTCAACAAAACCCTCAAGTGTCACTGCTACCTCAAGTACAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002614XLOC_002614Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004641-exon-sc0000047-1491911889:581289..581364TCONS_00004641-exon-sc0000047-1491911889:581289..581364Clytia hemisphaericaexon
TCONS_00004641-exon-sc0000047-1510915933:581289..581364TCONS_00004641-exon-sc0000047-1510915933:581289..581364Clytia hemisphaericaexon
TCONS_00004641-exon-sc0000047-1575043694:581289..581364TCONS_00004641-exon-sc0000047-1575043694:581289..581364Clytia hemisphaericaexon
TCONS_00004641-exon-sc0000047-1491911889:587632..590913TCONS_00004641-exon-sc0000047-1491911889:587632..590913Clytia hemisphaericaexon
TCONS_00004641-exon-sc0000047-1510915933:587632..590913TCONS_00004641-exon-sc0000047-1510915933:587632..590913Clytia hemisphaericaexon
TCONS_00004641-exon-sc0000047-1575043694:587632..590913TCONS_00004641-exon-sc0000047-1575043694:587632..590913Clytia hemisphaericaexon
TCONS_00004641-exon-sc0000047-1491911889:599559..599902TCONS_00004641-exon-sc0000047-1491911889:599559..599902Clytia hemisphaericaexon
TCONS_00004641-exon-sc0000047-1510915933:599559..599902TCONS_00004641-exon-sc0000047-1510915933:599559..599902Clytia hemisphaericaexon
TCONS_00004641-exon-sc0000047-1575043694:599559..599902TCONS_00004641-exon-sc0000047-1575043694:599559..599902Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004641-proteinTCONS_00004641-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:581289..599902 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.08296	4.01334	4.5514	4.50704	11.7197	9.20726	14.7181	16.3894	8.99688	9.57643	8.12086	6.00399	5.50979	5.20144	4.50285	5.0194	9.38401	7.67954	3.7669	4.58707	6.65949	7.04116	4.52132	5.178	7.28898	8.26329	5.84233	4.69806	4.90725	4.63631
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012936Erv_C
Blast
[Close]
BLAST of TCONS_00004641 vs. Swiss-Prot (Human)
Match: ERGI2 (Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Homo sapiens GN=ERGIC2 PE=1 SV=2)

HSP 1 Score: 334.339 bits (856), Expect = 3.946e-103
Identity = 170/348 (48.85%), Postives = 235/348 (67.53%), Query Frame = 1 
Query:  139 RRSVAKVFKELDAFPKVPEDYQETSTSGGTXXXXXXXXXXXXXXXEFIYYLDTDVKYQYEVDKDSEHKMRINIDMTVAMECNDIGADVLDVAGASISTDEHLKMEPTYFKMSNNQLTWWQAFRKFRRFDEGFRSLREINQMSLIFGHVLPTYIPEIDKKEF-ADREPDACRIYGNVEVNKVAGNFHVTAGKSIPHPRGHAHLSSLVSELNYNFSHRIDLLSFGDPHPGLINPMDGDLQIAEKGYHMFQYYIKIVPTYIQTVREDMKANQFSVTQRSRPIDHTKGSHGVPGIFFKYDFNAVSVRIKEERRDFSQFLVRLCGIIGGVFATSGMLHSLVGFLADSIMCQIK 1179
            R+    + KELDAFPKVPE Y ETS SGGTVS++ F  + +L + EF  Y DT +KY+YEVDKD   K+RINID+TVAM+C  +GADVLD+A   +++ + L  EPT F +S  Q  W +  +  +   +   SL+++     IF     +    +  +E  + + P+ACRI+G++ VNKVAGNFH+T GK+IPHPRGHAHL++LV+  +YNFSHRID LSFG+  P +INP+DG  +IA     MFQY+I +VPT + T +     +QFSVT+R R I+H  GSHGV GIF KYD +++ V + EE   F QF VRLCGI+GG+F+T+GMLH +  F+ + I C+ +
Sbjct:    6 RKKTLSLVKELDAFPKVPESYVETSASGGTVSLIAFTTMALLTIMEFSVYQDTWMKYEYEVDKDFSSKLRINIDITVAMKCQYVGADVLDLAETMVASADGLVYEPTVFDLSPQQKEWQRMLQLIQSRLQEEHSLQDV-----IFKSAFKSTSTALPPREDDSSQSPNACRIHGHLYVNKVAGNFHITVGKAIPHPRGHAHLAALVNHESYNFSHRIDHLSFGELVPAIINPLDGTEKIAIDHNQMFQYFITVVPTKLHTYKISADTHQFSVTERERIINHAAGSHGVSGIFMKYDLSSLMVTVTEEHMPFWQFFVRLCGIVGGIFSTTGMLHGIGKFIVEIICCRFR 348
The following BLAST results are available for this feature:
BLAST of TCONS_00004641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERGI23.946e-10348.85Endoplasmic reticulum-Golgi intermediate compartme... [more]
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