TCONS_00047731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047731
Unique NameTCONS_00047731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047731 ID=TCONS_00047731|Name=TCONS_00047731|organism=Clytia hemisphaerica|type=transcript|length=333bp
NAAGTCTTGAGCTAATCCACACTTGTTTGAAAAGGATGGCATATCCCAGG
TCTTTGTTCTCAACGGTGAAAGTTTGGTTGCTGGATTCAAAAGCTTCTCT
GGAAATTTATCTTCTATCTtgggtttttcgtcaaaaaagaaaaaccagCC
GTGTTTTTCTGTGACGTGTTTCCGGCAACCTCTCTGACTTTTGTAAGCGT
TGCTGTCACATTCACTGAGTGGACAAAGATAAATACCATTGATATCTGGT
TGTAATTTCAGTCGTTTTGCTTTTTCGCTGGCACCCTCAACATTTTTCCA
CTCTTTTTTATGAAACGTCCTCTTCATATTGAC
Run BLAST on NCBI

protein sequence of TCONS_00047731-protein

>TCONS_00047731-protein ID=TCONS_00047731-protein|Name=TCONS_00047731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
VNMKRTFHKKEWKNVEGASEKAKRLKLQPDINGIYLCPLSECDSNAYKSQ
RGCRKHVTEKHGWFFFFDEKPKIEDKFPEKLLNPATKLSPLRTKTWDMPS
FSNKCGLAQDX
Run BLAST on NCBI

transcript from alignment at scaffold_135:16934..17266

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047731 ID=TCONS_00047731|Name=TCONS_00047731|organism=Clytia hemisphaerica|type=transcript|length=333bp|location=Sequence derived from alignment at scaffold_135:16934..17266 (Clytia hemisphaerica)
GTCAATATGAAGAGGACGTTTCATAAAAAAGAGTGGAAAAATGTTGAGGG
TGCCAGCGAAAAAGCAAAACGACTGAAATTACAACCAGATATCAATGGTA
TTTATCTTTGTCCACTCAGTGAATGTGACAGCAACGCTTACAAAAGTCAG
AGAGGTTGCCGGAAACACGTCACAGAAAAACACGGctggtttttcttttt
tgacgaaaaacccaAGATAGAAGATAAATTTCCAGAGAAGCTTTTGAATC
CAGCAACCAAACTTTCACCGTTGAGAACAAAGACCTGGGATATGCCATCC
TTTTCAAACAAGTGTGGATTAGCTCAAGACTTN

Coding sequence (CDS) from alignment at scaffold_135:16934..17266

>TCONS_00047731 ID=TCONS_00047731|Name=TCONS_00047731|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_135:16934..17266 (Clytia hemisphaerica)
GTCAATATGAAGAGGACGTTTCATAAAAAAGAGTGGAAAAATGTTGAGGG
TGCCAGCGAAAAAGCAAAACGACTGAAATTACAACCAGATATCAATGGTA
TTTATCTTTGTCCACTCAGTGAATGTGACAGCAACGCTTACAAAAGTCAG
AGAGGTTGCCGGAAACACGTCACAGAAAAACACGGctggtttttcttttt
tgacgaaaaacccaAGATAGAAGATAAATTTCCAGAGAAGCTTTTGAATC
CAGCAACCAAACTTTCACCGTTGAGAACAAAGACCTGGGATATGCCATCC
TTTTCAAACAAGTGTGGATTAGCTCAAGACTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030397XLOC_030397Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047731-exon-scaffold_135-1491911889:16934..17266TCONS_00047731-exon-scaffold_135-1491911889:16934..17266Clytia hemisphaericaexon
TCONS_00047731-exon-scaffold_135-1510915933:16934..17266TCONS_00047731-exon-scaffold_135-1510915933:16934..17266Clytia hemisphaericaexon
TCONS_00047731-exon-scaffold_135-1575043694:16934..17266TCONS_00047731-exon-scaffold_135-1575043694:16934..17266Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047731-proteinTCONS_00047731-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_135supercontigscaffold_135:16934..17266 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43053	1.39499	0.647886	1.26771	3.47246	2.4391	13.6098	29.2707	4.58081	11.3481	4.92767	4.95415	1.33196	1.77846	0.8123	1.39475	3.43645	2.20141	0.304136	1.90954	1.65974	1.21434	0.656085	0	0	3.01564	1.17692	0	1.90533	0.323538
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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