TCONS_00047809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047809
Unique NameTCONS_00047809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1011

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047809 ID=TCONS_00047809|Name=TCONS_00047809|organism=Clytia hemisphaerica|type=transcript|length=1011bp
cccgattccgcaattccgtcaattttttttccaatttccgtcaaaccgtc
ttaaattgaaccaaaattccgtcaccgaaaattcctttgaaattcaatat
ttttgtcgaaaattccgNCACGAAAATCGTAAACAAGTAGAAAATCCCCT
AGACTTCTATAGAAAAGAAAGCCTCAAGAATGAAGCttcaaaatgtttat
ttttttagtaTCCGTAATTGCCATCAGCTTCAGGAAACTTTTTTCTAATC
CTTGCTACAACACATGAGGGCAATGGACCTCTCCGTTCTCTCTTGCCTAA
CTGTCGTACTCTAAAAGCCCATGTATTGAATTGTTTATAAGCTGCAACTC
GATAAGAACGATTGGTTAGTTTGTCGTCTATAGGATCGCCTCTAATAAAA
TGTTTGTCTCTTAACATCATTTCCAGCATTGTTTTGTCCAAGAAAAGCGt
attaaaggaagaaaagttCCTAATACATGTGATGTTCTCTTGCACGAATC
TGGCATTCAATTGTTCAACTTCCCAACAACATTTACAGTCACTTGATTCA
CTCTCAATTCTACAATTTCCACACGAACACCATTCAAGATTTTGAGTTCT
ACCTGACTCAACATTGCTAATAAAACCATTTTCTTCTTCTGGGCCACTCA
TCGAGTATTCGGAATATTAAATTTAATCACtataaaatgagaatttttgt
GAAGCAAACGGAAAAGTTTTCTATCTAGAAAATTCCCGCGAGTACATAAA
CCactttaaaaacaacttttcaCTTTCTAGGCGAAACCTGGTATTAAGGG
TGTGGTCAAACGCGAAGTATATTGATAGAATACTCCTGTCTACCATCATG
AATGCCATTCTAACACtaacttttgatttgagaaaTAGCTCAAGTCGTGT
CATGAACAAATTATCATACAAGAGCTGAAACCTTTCTGCCGCAGTTCTTT
TAAACTTTCACTGTTTTAAAGTATTTTGAGTTTCTACTTCAAGTACCTGT
Cgaaattataa
Run BLAST on NCBI

protein sequence of TCONS_00047809-protein

>TCONS_00047809-protein ID=TCONS_00047809-protein|Name=TCONS_00047809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MSGPEEENGFISNVESGRTQNLEWCSCGNCRIESESSDCKCCWEVEQLNA
RFVQENITCIRNFSSFNTLFLDKTMLEMMLRDKHFIRGDPIDDKLTNRSY
RVAAYKQFNTWAFRVRQLGKRERRGPLPSCVVARIRKKFPEADGNYGY
Run BLAST on NCBI

transcript from alignment at scaffold_136:30704..31714

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047809 ID=TCONS_00047809|Name=TCONS_00047809|organism=Clytia hemisphaerica|type=transcript|length=1011bp|location=Sequence derived from alignment at scaffold_136:30704..31714 (Clytia hemisphaerica)
ttataatttcGACAGGTACTTGAAGTAGAAACTCAAAATACTTTAAAACA
GTGAAAGTTTAAAAGAACTGCGGCAGAAAGGTTTCAGCTCTTGTATGATA
ATTTGTTCATGACACGACTTGAGCTAtttctcaaatcaaaagttaGTGTT
AGAATGGCATTCATGATGGTAGACAGGAGTATTCTATCAATATACTTCGC
GTTTGACCACACCCTTAATACCAGGTTTCGCCTAGAAAGtgaaaagttgt
ttttaaagtGGTTTATGTACTCGCGGGAATTTTCTAGATAGAAAACTTTT
CCGTTTGCTTCacaaaaattctcattttataGTGATTAAATTTAATATTC
CGAATACTCGATGAGTGGCCCAGAAGAAGAAAATGGTTTTATTAGCAATG
TTGAGTCAGGTAGAACTCAAAATCTTGAATGGTGTTCGTGTGGAAATTGT
AGAATTGAGAGTGAATCAAGTGACTGTAAATGTTGTTGGGAAGTTGAACA
ATTGAATGCCAGATTCGTGCAAGAGAACATCACATGTATTAGGaactttt
cttcctttaataCGCTTTTCTTGGACAAAACAATGCTGGAAATGATGTTA
AGAGACAAACATTTTATTAGAGGCGATCCTATAGACGACAAACTAACCAA
TCGTTCTTATCGAGTTGCAGCTTATAAACAATTCAATACATGGGCTTTTA
GAGTACGACAGTTAGGCAAGAGAGAACGGAGAGGTCCATTGCCCTCATGT
GTTGTAGCAAGGATTAGAAAAAAGTTTCCTGAAGCTGATGGCAATTACGG
AtactaaaaaaataaacattttgaaGCTTCATTCTTGAGGCTTTCTTTTC
TATAGAAGTCTAGGGGATTTTCTACTTGTTTACGATTTTCGTGNcggaat
tttcgacaaaaatattgaatttcaaaggaattttcggtgacggaattttg
gttcaatttaagacggtttgacggaaattggaaaaaaaattgacggaatt
gcggaatcggg

Coding sequence (CDS) from alignment at scaffold_136:30704..31714

>TCONS_00047809 ID=TCONS_00047809|Name=TCONS_00047809|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_136:30704..31714 (Clytia hemisphaerica)
ATGAGTGGCCCAGAAGAAGAAAATGGTTTTATTAGCAATGTTGAGTCAGG
TAGAACTCAAAATCTTGAATGGTGTTCGTGTGGAAATTGTAGAATTGAGA
GTGAATCAAGTGACTGTAAATGTTGTTGGGAAGTTGAACAATTGAATGCC
AGATTCGTGCAAGAGAACATCACATGTATTAGGaacttttcttcctttaa
taCGCTTTTCTTGGACAAAACAATGCTGGAAATGATGTTAAGAGACAAAC
ATTTTATTAGAGGCGATCCTATAGACGACAAACTAACCAATCGTTCTTAT
CGAGTTGCAGCTTATAAACAATTCAATACATGGGCTTTTAGAGTACGACA
GTTAGGCAAGAGAGAACGGAGAGGTCCATTGCCCTCATGTGTTGTAGCAA
GGATTAGAAAAAAGTTTCCTGAAGCTGATGGCAATTACGGAtactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030421XLOC_030421Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047809-proteinTCONS_00047809-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047809-exon-scaffold_136-1491911889:30704..31714TCONS_00047809-exon-scaffold_136-1491911889:30704..31714Clytia hemisphaericaexon
TCONS_00047809-exon-scaffold_136-1510915933:30704..31714TCONS_00047809-exon-scaffold_136-1510915933:30704..31714Clytia hemisphaericaexon
TCONS_00047809-exon-scaffold_136-1575043694:30704..31714TCONS_00047809-exon-scaffold_136-1575043694:30704..31714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_136supercontigscaffold_136:30704..31714 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.0156	12.9834	4.46299	3.05031	4.64404	3.1398	4.81992	5.84685	2.91476	2.22432	1.75256	2.04057	2.13216	1.74853	3.71346	5.94986	5.60809	7.5572	0.427877	0.494349	6.37723	4.7327	12.1998	10.1765	4.89138	4.90761	2.58402	3.49011	8.03358	8.00326
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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