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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047811 ID=TCONS_00047811|Name=TCONS_00047811|organism=Clytia hemisphaerica|type=transcript|length=1301bp
gtcaaaatatgaaaatatgaaaaatgggTGAAAAAGAGGccgatttgcaa
aattttgtccACGTAATTTTCAATTCGCGAAAAAAAAGTCCACAAggaaa
ttaatccacttaaggtaaaaAGTGCGTTACTCTACTTACACGACAAAGTC
TTTAGCCGTCAGTATAGCAACACAAAACACGTAATAGCCAAAGCACAGAC
CACATAATAAAGAATGTCTCTCAAGGGTTCAAAAAGAAGTTGGAAAGTTT
TCTTAACCAATTTCCAAATTGATCAAGCAACGGAAGATTTCAACTAACTC
AACCAAATCCAATGACaatattgttttgaatatttcactCTTTTGGTAAT
CTAGCAACATAAAAAAACTAATATCCAATGAAAGATTTTCAGGGTAATGT
TCTCCTGTTCAGAATATTAAATCACAACATCACAATCAAGATCCATaaaa
gcgagtttatgtatcggaagatatcgagggcgacggttaGTGAAGCCAAC
GCAAAACAAAGAATTGATGTACGGCTCTTTATCAATTTTGCTCACCTAAA
CTGACGACAGTATCATTGTCGAGCAAAGTGAACGGCGATTCTGGTGACAT
TTCAACTTTGCTTCGtaccgtctccttcgatttatttcaaatacataaac
tcgctaaaatctgaaatcaaatcaatcttctTCTTCGCTGTCATCGAAAT
CAGTGTACATAGTCCACCACATGGTGACCCTCTCTTGAGGAGGATAAAAA
ACAATATCCATTTTCTGGATTTCTCGACATTCAAACCTACTGGTAGCTTT
GATCTTGGTTTTACCCAAGATCTCTGCTGCAGCTAGGGGGCCTTTGACGG
TTGCCACCACGACGGGTGTCTCTTTCGTAAAGGTTTCCGGAGTTACGCTA
CTTGAATTAGGAACgattaatttttcaaacaattcTTTAGAAATATCTTT
GCATGTACACGTGCAATTTGCCTTAACGGCGTATTTTTCGAAGTGGATTT
TCGCTTTGACCATATCCCCAAGACGACGTCTCTCTTGCTCTAATGTGGAT
GTGTTTTTCTTTAACTTCTTACTTTTAAGACTTATAATATTTGTTTTCTT
CTCTTGAGAAGCAGTGGCTTCATCACCatcgttttctttttcatctttat
cATCGGGTTTAGTAGTCTTACGTTTATATTGTCTTTTTGCGAAAAAGTTG
ATACTCAttatgttttcttgtttttaatttgctgaaaaataagtgtaata
atttataattttgattcaaCTCCAACTACACGTATCCTGTATTAACACAG
G Run BLAST on NCBI protein sequence of TCONS_00047811-protein >TCONS_00047811-protein ID=TCONS_00047811-protein|Name=TCONS_00047811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MSINFFAKRQYKRKTTKPDDKDEKENDGDEATASQEKKTNIISLKSKKLK
KNTSTLEQERRRLGDMVKAKIHFEKYAVKANCTCTCKDISKELFEKLIVP
NSSSVTPETFTKETPVVVATVKGPLAAAEILGKTKIKATSRFECREIQKM
DIVFYPPQERVTMWWTMYTDFDDSEEED Run BLAST on NCBI transcript from alignment at scaffold_136:89807..91107 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047811 ID=TCONS_00047811|Name=TCONS_00047811|organism=Clytia hemisphaerica|type=transcript|length=1301bp|location=Sequence derived from alignment at scaffold_136:89807..91107 (Clytia hemisphaerica)
CCTGTGTTAATACAGGATACGTGTAGTTGGAGttgaatcaaaattataaa
ttattacacttatttttcagcaaattaaaaacaagaaaacataaTGAGTA
TCAACTTTTTCGCAAAAAGACAATATAAACGTAAGACTACTAAACCCGAT
gataaagatgaaaaagaaaacgatGGTGATGAAGCCACTGCTTCTCAAGA
GAAGAAAACAAATATTATAAGTCTTAAAAGTAAGAAGTTAAAGAAAAACA
CATCCACATTAGAGCAAGAGAGACGTCGTCTTGGGGATATGGTCAAAGCG
AAAATCCACTTCGAAAAATACGCCGTTAAGGCAAATTGCACGTGTACATG
CAAAGATATTTCTAAAgaattgtttgaaaaattaatcGTTCCTAATTCAA
GTAGCGTAACTCCGGAAACCTTTACGAAAGAGACACCCGTCGTGGTGGCA
ACCGTCAAAGGCCCCCTAGCTGCAGCAGAGATCTTGGGTAAAACCAAGAT
CAAAGCTACCAGTAGGTTTGAATGTCGAGAAATCCAGAAAATGGATATTG
TTTTTTATCCTCCTCAAGAGAGGGTCACCATGTGGTGGACTATGTACACT
GATTTCGATGACAGCGAAGAagaagattgatttgatttcagattttagcg
agtttatgtatttgaaataaatcgaaggagacggtaCGAAGCAAAGTTGA
AATGTCACCAGAATCGCCGTTCACTTTGCTCGACAATGATACTGTCGTCA
GTTTAGGTGAGCAAAATTGATAAAGAGCCGTACATCAATTCTTTGTTTTG
CGTTGGCTTCACtaaccgtcgccctcgatatcttccgatacataaactcg
cttttATGGATCTTGATTGTGATGTTGTGATTTAATATTCTGAACAGGAG
AACATTACCCTGAAAATCTTTCATTGGATATTAGTTTTTTTATGTTGCTA
GATTACCAAAAGagtgaaatattcaaaacaatattGTCATTGGATTTGGT
TGAGTTAGTTGAAATCTTCCGTTGCTTGATCAATTTGGAAATTGGTTAAG
AAAACTTTCCAACTTCTTTTTGAACCCTTGAGAGACATTCTTTATTATGT
GGTCTGTGCTTTGGCTATTACGTGTTTTGTGTTGCTATACTGACGGCTAA
AGACTTTGTCGTGTAAGTAGAGTAACGCACTttttaccttaagtggatta
atttccTTGTGGACTTTTTTTTCGCGAATTGAAAATTACGTggacaaaat
tttgcaaatcggCCTCTTTTTCAcccatttttcatattttcatattttga
c Coding sequence (CDS) from alignment at scaffold_136:89807..91107 >TCONS_00047811 ID=TCONS_00047811|Name=TCONS_00047811|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_136:89807..91107 (Clytia hemisphaerica)
aTGAGTATCAACTTTTTCGCAAAAAGACAATATAAACGTAAGACTACTAA
ACCCGATgataaagatgaaaaagaaaacgatGGTGATGAAGCCACTGCTT
CTCAAGAGAAGAAAACAAATATTATAAGTCTTAAAAGTAAGAAGTTAAAG
AAAAACACATCCACATTAGAGCAAGAGAGACGTCGTCTTGGGGATATGGT
CAAAGCGAAAATCCACTTCGAAAAATACGCCGTTAAGGCAAATTGCACGT
GTACATGCAAAGATATTTCTAAAgaattgtttgaaaaattaatcGTTCCT
AATTCAAGTAGCGTAACTCCGGAAACCTTTACGAAAGAGACACCCGTCGT
GGTGGCAACCGTCAAAGGCCCCCTAGCTGCAGCAGAGATCTTGGGTAAAA
CCAAGATCAAAGCTACCAGTAGGTTTGAATGTCGAGAAATCCAGAAAATG
GATATTGTTTTTTATCCTCCTCAAGAGAGGGTCACCATGTGGTGGACTAT
GTACACTGATTTCGATGACAGCGAAGAagaagattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047811-exon-scaffold_136-1491911889:89807..91107 | TCONS_00047811-exon-scaffold_136-1491911889:89807..91107 | Clytia hemisphaerica | exon |
| TCONS_00047811-exon-scaffold_136-1510915933:89807..91107 | TCONS_00047811-exon-scaffold_136-1510915933:89807..91107 | Clytia hemisphaerica | exon |
| TCONS_00047811-exon-scaffold_136-1575043694:89807..91107 | TCONS_00047811-exon-scaffold_136-1575043694:89807..91107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_136 | supercontig | scaffold_136:89807..91107 . |
Blast
The following BLAST results are available for this feature:
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