TCONS_00047774 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00047774
Unique Name	TCONS_00047774
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1562

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_136:210479..212040-

transcript sequence

>TCONS_00047774 ID=TCONS_00047774|Name=TCONS_00047774|organism=Clytia hemisphaerica|type=transcript|length=1562bp
AAGAAATTTAGTCAACGAGACTTTGCTGAAGCCTTTGCTGCGATTTCAAG
AGAAATAGATTTATGCTGTGATGCTGTTGGATATCGTACCATATGGCACA
GACTATCAGTCAAGTATGGAATTAGAATTTCTCGAAATTTTGTGATGGAA
GCAATGAAGTTTCTTGACCCGGCTGGGGCAGCACATAGAAGATCTCGACG
CCTGCGGAGAAGAAGCTATAGATCAGATGGACCAAACTACACGTGGCATG
TGGATGGCTATGACAAACTTAAAAGATATTTTTGTCCCTTAGTTTTTGAA
TATCTCAAGCAACGCAACATGTCATCAATCTCGATATCATCCTTAAATCC
ATAATTTAGTAAAATTTCTATGTTAGAAATCTTAAATTTTCTAATTTTTC
AGGTATGGTTTCCCAATTCATGGGTGCTGTGATGGTTTCAGCAGGAAGAT
TTTGTGGCTACGTGTTATCAACAGTAACAACAATCCAAAAATAATTTGCA
ACCTTTTTTTGAAAACCGTAGAAGAAATTGGTGTGTTTCCCAGATGTGTG
CGATCGGACTGCGGTACAGAGAATGGTTATTTAGCTGCAGCACAATGCTA
CTTCAACCGTCAAAGTGATCATCGAGCTCATTTGTATGGATCTTCAAATC
ACAATCAGCGCATAGAAAGTTGGTGGTCACAATTTCGACGACTAAATACC
GAGTATTTAATAAATTTTTTTCAAGATATGGTGGACGAAGGTATCTATAA
TACAGGCGATTATCTTCACCGGGCCTGTGCGTTTTATTGTTTTGCTCCGT
TGATTCAACACGAGCTTGATTCTTGTATGGAACAGTGGAATTCACATTTC
ATTAGGCACTCTCCTAATGTAGAAGCTAGTGGTCGCCCTGATGTGCTATA
TTCCTTCCCGCCGAATGGTTTCAGAGAAAATTGTACCCAGTGTAATCCTG
CCGATATTGCTACTGTTCGAGGATATTCAGTTAACTTGGAAAATGACATG
GACCAAAATAATTTTGACTGGAACAGCGTCGATTTTTTCAACTACCTGTG
TGATTTCTTGATACTACCCGAGTTCTCTAACCTTCAAAttgcaaaacaaa
actttaTTCGCATGTTGCCACATTGTGTTTTATAAGTAAGCAAAAGTAAC
TGGAAAGTGATGCTGCTAAATCTTGTGTGGGCAAAAAATGGGACTATTCG
AATACACTGGCTTTAGTTACGGTTTTTAATATCAATATGTAGAAATCGAC
TAAATTACATGATCCAAATGTGTTTGAAGTTTTTCAAGTTTAAATTGATT
GACGGGTTTTTTAATTGTTGTACCAATTATTCGGATAAAGTCCCATTTTT
TGCCCACTcagtatttttaaacaaaagaattggcTACATTTTTCTGAGCA
CACATAATTCTTTTTCAGCTGTTATTTACAGAATTTTGCTTTAACTTGTG
CTACTCTGCTGATGTTACATCAAGTCGCTTAGCGTAACCTACcagcaaag
aaaaaatatttgagtGCAATTGAAATTGTTCCAAAATTTGAAGCAGCCTT
TCTCTTCTTCCG

Run BLAST on NCBI

transcript from alignment at scaffold_136:210479..212040-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00047774 ID=TCONS_00047774|Name=TCONS_00047774|organism=Clytia hemisphaerica|type=transcript|length=1562bp|location=Sequence derived from alignment at scaffold_136:210479..212040- (Clytia hemisphaerica)
AAGAAATTTAGTCAACGAGACTTTGCTGAAGCCTTTGCTGCGATTTCAAG
AGAAATAGATTTATGCTGTGATGCTGTTGGATATCGTACCATATGGCACA
GACTATCAGTCAAGTATGGAATTAGAATTTCTCGAAATTTTGTGATGGAA
GCAATGAAGTTTCTTGACCCGGCTGGGGCAGCACATAGAAGATCTCGACG
CCTGCGGAGAAGAAGCTATAGATCAGATGGACCAAACTACACGTGGCATG
TGGATGGCTATGACAAACTTAAAAGATATTTTTGTCCCTTAGTTTTTGAA
TATCTCAAGCAACGCAACATGTCATCAATCTCGATATCATCCTTAAATCC
ATAATTTAGTAAAATTTCTATGTTAGAAATCTTAAATTTTCTAATTTTTC
AGGTATGGTTTCCCAATTCATGGGTGCTGTGATGGTTTCAGCAGGAAGAT
TTTGTGGCTACGTGTTATCAACAGTAACAACAATCCAAAAATAATTTGCA
ACCTTTTTTTGAAAACCGTAGAAGAAATTGGTGTGTTTCCCAGATGTGTG
CGATCGGACTGCGGTACAGAGAATGGTTATTTAGCTGCAGCACAATGCTA
CTTCAACCGTCAAAGTGATCATCGAGCTCATTTGTATGGATCTTCAAATC
ACAATCAGCGCATAGAAAGTTGGTGGTCACAATTTCGACGACTAAATACC
GAGTATTTAATAAATTTTTTTCAAGATATGGTGGACGAAGGTATCTATAA
TACAGGCGATTATCTTCACCGGGCCTGTGCGTTTTATTGTTTTGCTCCGT
TGATTCAACACGAGCTTGATTCTTGTATGGAACAGTGGAATTCACATTTC
ATTAGGCACTCTCCTAATGTAGAAGCTAGTGGTCGCCCTGATGTGCTATA
TTCCTTCCCGCCGAATGGTTTCAGAGAAAATTGTACCCAGTGTAATCCTG
CCGATATTGCTACTGTTCGAGGATATTCAGTTAACTTGGAAAATGACATG
GACCAAAATAATTTTGACTGGAACAGCGTCGATTTTTTCAACTACCTGTG
TGATTTCTTGATACTACCCGAGTTCTCTAACCTTCAAATTGCAAAACAAA
ACTTTATTCGCATGTTGCCACATTGTGTTTTATAAGTAAGCAAAAGTAAC
TGGAAAGTGATGCTGCTAAATCTTGTGTGGGCAAAAAATGGGACTATTCG
AATACACTGGCTTTAGTTACGGTTTTTAATATCAATATGTAGAAATCGAC
TAAATTACATGATCCAAATGTGTTTGAAGTTTTTCAAGTTTAAATTGATT
GACGGGTTTTTTAATTGTTGTACCAATTATTCGGATAAAGTCCCATTTTT
TGCCCACTCAGTATTTTTAAACAAAAGAATTGGCTACATTTTTCTGAGCA
CACATAATTCTTTTTCAGCTGTTATTTACAGAATTTTGCTTTAACTTGTG
CTACTCTGCTGATGTTACATCAAGTCGCTTAGCGTAACCTACCAGCAAAG
AAAAAATATTTGAGTGCAATTGAAATTGTTCCAAAATTTGAAGCAGCCTT
TCTCTTCTTCCG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030411	XLOC_030411	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00047774-exon-scaffold_136-1575043694:210479..212040	TCONS_00047774-exon-scaffold_136-1575043694:210479..212040	Clytia hemisphaerica	exon
TCONS_00047774-exon-scaffold_136-1510915933:210479..212040	TCONS_00047774-exon-scaffold_136-1510915933:210479..212040	Clytia hemisphaerica	exon
TCONS_00047774-exon-scaffold_136-1491911889:210479..212040	TCONS_00047774-exon-scaffold_136-1491911889:210479..212040	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_136	supercontig	scaffold_136:210479..212040 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.130433	0.127193	0.0593787	0	0.351792	0.416986	0.922306	0.941948	0.79044	0.408436	1.05717	0.694941	1.0394	1.21618	0.148128	0.516634	0.146873	0.551981	0.346633	0.408355	0.063055	0.369072	0.747759	0.679821	0.49014	1.62477	0	0.0767442	0.0291039	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00047774 vs. Swiss-Prot (Human)

BLAST of TCONS_00047774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00047774 (transcript) - C. hemisphaerica