TCONS_00047813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047813
Unique NameTCONS_00047813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047813 ID=TCONS_00047813|Name=TCONS_00047813|organism=Clytia hemisphaerica|type=transcript|length=468bp
GCGAAGAGGACCGCTTGCTCGAACGTGTGTTCCATCACTTACTCTTCAAG
ATGACTATGAAAGCTACAATGTCTTTGAGCAAGAGTTTAAGGATATTCTC
AACTCAAAATATGCATACAGCTTTCACTTTGGCTGATTGTAAAATATAAA
ATTTTTAAGAACTTGAACAGTTGATATTGTATGATTTCTTTTTGACTTTT
TACTTCGTCTGTTTAACATTACCGGTTTCTTTTGTCCTGAGCTTAAAGCT
CCCTTTTGTTGTTCTAATACTTTTTTGTTGATACTAATACTAGTGTAATA
GAAATTTCAAATTTGACTATCCATTGTATCAGGTTCCCCTTATCTACAAT
TAAGGCTGTGAAAAATAGAGTTATGTTTATGATTTATACGTTTACATATT
TGCGAGGTTTTATCACCAGATAACAGTTTACTAGTTTATATTTTCAAACC
TCAAAACTTTGCAAAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_136:212627..213094

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047813 ID=TCONS_00047813|Name=TCONS_00047813|organism=Clytia hemisphaerica|type=transcript|length=468bp|location=Sequence derived from alignment at scaffold_136:212627..213094 (Clytia hemisphaerica)
CTTTTTGCAAAGTTTTGAGGTTTGAAAATATAAACTAGTAAACTGTTATC
TGGTGATAAAACCTCGCAAATATGTAAACGTATAAATCATAAACATAACT
CTATTTTTCACAGCCTTAATTGTAGATAAGGGGAACCTGATACAATGGAT
AGTCAAATTTGAAATTTCTATTACACTAGTATTAGTATCAACAAAAAAGT
ATTAGAACAACAAAAGGGAGCTTTAAGCTCAGGACAAAAGAAACCGGTAA
TGTTAAACAGACGAAGTAAAAAGTCAAAAAGAAATCATACAATATCAACT
GTTCAAGTTCTTAAAAATTTTATATTTTACAATCAGCCAAAGTGAAAGCT
GTATGCATATTTTGAGTTGAGAATATCCTTAAACTCTTGCTCAAAGACAT
TGTAGCTTTCATAGTCATCTTGAAGAGTAAGTGATGGAACACACGTTCGA
GCAAGCGGTCCTCTTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030425XLOC_030425Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047813-exon-scaffold_136-1491911889:212627..213094TCONS_00047813-exon-scaffold_136-1491911889:212627..213094Clytia hemisphaericaexon
TCONS_00047813-exon-scaffold_136-1510915933:212627..213094TCONS_00047813-exon-scaffold_136-1510915933:212627..213094Clytia hemisphaericaexon
TCONS_00047813-exon-scaffold_136-1575043694:212627..213094TCONS_00047813-exon-scaffold_136-1575043694:212627..213094Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_136supercontigscaffold_136:212627..213094 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.13698	0	0	0	0	0.437916	1.23276	0.329742	1.1543	0.428937	2.08168	1.55087	1.73092	3.68976	0.544471	0.0834716	0.822641	0.42159	0.291225	0	0.529759	0.775194	0.314116	0.142789	0.294138	0.918789	0.187826	0	0	0.154901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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