TCONS_00047778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047778
Unique NameTCONS_00047778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047778 ID=TCONS_00047778|Name=TCONS_00047778|organism=Clytia hemisphaerica|type=transcript|length=1450bp
agttAATGAAAAATGTATTGTTGTCATTGCGCATATCCCATTGCATCTAA
TCAAGTTTTTTGTACTGCATGTGGTAAACGAAATACTACACAAAATACTG
GTGCCAGCACAAGTACATCAAAtcaaggaaaaaaaacattccagCAATTC
TTAGAAGAGAAGAAGACTGATCGTATATGcaagtccaaaaaacaaaagat
ttctaAAGTTACTGTTAATGTCTCTGTTTTAAATGAATTTGTTGGGCAAC
AGTTCGAGACTTATTACAAACAAGTACCAAACTCCCGTCTCCCACTTGAA
TGTGAGCCTCAATGGGACTACTACAAATTACGAGAAGCTGCTTTTGATAA
ACAAAAACGTTACAACAAACTGATTGCATCAAAACAGCTGGAAGATGTAA
AACTTGTATATAATAAGGATGGTGATATTTGTAAAACAATTCCAGGAACT
AACATTCCATTCACATTGGAAAAATATCAAAGAGATATCTGTAAGAAATA
CAAAGATATGTTGTTTTATCTGTTGCCAATGTTCATTGAAGACGAAGACG
ATGATGAACCGCTTCCATCTGCACTAAGCAAAAGACAAAAGTAAGCAATC
AATATCTTTTGGTTTACCTTTCAGAAACAATTTTTGgcagaatttaaatt
ttttttctattcaggaaaagttttgaggaaatgtaaataaaacattacaa
attttgaagattgttGCAGGAGAAAGATTCTACCaggatttctttcaaaa
ataattcaaaattgggcttaaaagtcaaaaatgctaacaaaaatttgaca
aagttTGACGTCTTTGAGATTGTGACCATATTTTTTCCATGAGGAAATTA
AGACACCAAATTTGACCCTGGTCTACAGTAGATTCTGTCTTCTTGTGAGC
TGCTTTAAAGTGTACCACTTACTTAGCAACCCTGTCAAACCAGTAAGATC
CCACCCGCCTCGTCCTTATTAATATGGGTGGTGCCAAAGGCTAAAAGAAG
ATATCTTAAAGCTATATACAATTTTCTTTCTAGTACTGTATCACAGTAAA
TTATTAATTCAATGCGTTTTTTTTAGTGACGAGAATCCAGTGAATCCATT
ACCTTTCAATATCTTTGATACGGGAGCAGCAATATCATTCAACAATAATA
GCTCTACAGTTTCTGCAAATCCACACAACTCTACTGTCGAATTTGGAGCC
AACTCTCAGAATGATCAGCTTCTTTCTTCAGTCACGCATCCCTGGAATCA
TGCTTCAATGGATTCTGCCGCCGCTCGCAACACCTCTTTTGAATATTCAA
CAAATCATGTGAACAATCAACTCAGTTCTTTGATTGCACCTGCTTCAATT
GAGGATTCAACATATTCTACAGTTTCTCACAACACTTCTTTGGTTGCAAG
CTCTTCGAATGACCAGCTTCTTTCTTCGATTGCACCAAACTCAATTCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_136:215717..220435-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047778 ID=TCONS_00047778|Name=TCONS_00047778|organism=Clytia hemisphaerica|type=transcript|length=4719bp|location=Sequence derived from alignment at scaffold_136:215717..220435- (Clytia hemisphaerica)
AGTTAATGAAAAATGTATTGTTGTCATTGCGCATATCCCATTGCATCTAA
TCAAGTTTTTTGTACTGCATGTGGTAAACGAAATACTACACAAAATACTG
GTGCCAGCACAAGTACATCAAATCAAGGAAAAAAAACATTCCAGCAATTC
TTAGAAGAGAAGAAGACTGATCGTATATGCAAGTCCAAAAAACAAAAGAT
TTCTAAAGTTACTGTTAATGTCTCTGTTTTAAATGAATTTGTTGGGCAAC
AGTTCGAGACTTATTACAAACAAGTACCAAACTCCCGTCTCCCACTTGAA
TGTGAGCCTCAATGGGACTACTACAAATTACGAGAAGCTGCTTTTGATAA
ACAAAAACGTTACAACAAACTGATTGCATCAAAACAGCTGGAAGATGTAA
AACTTGTATATAATAAGGATGGTGATATTTGTAAAACAATTCCAGGAACT
AACATTCCATTCACATTGGAAAAATATCAAAGAGATATCTGTAAGAAATA
CAAAGATATGTTGTTTTATCTGTTGCCAATGTTCATTGAAGACGAAGACG
ATGATGAACCGCTTCCATCTGCACTAAGCAAAAGACAAAAGTAAGCAATC
AATATCTTTTGGTTTACCTTTCAGAAACAATTTTTGGCAGAATTTAAATT
TTTTTTCTATTCAGGAAAAGTTTTGAGGAAATGTAAATAAAACATTACAA
ATTTTGAAGATTGTTGCAGGAGAAAGATTCTACCAGGATTTCTTTCAAAA
ATAATTCAAAATTGGGCTTAAAAGTCAAAAATGCTAACAAAAATTTGACA
AAGTTTGACGTCTTTGAGATTGTGACCATATTTTTTCCATGAGGAAATTA
AGACACCAAATTTGACCCTGGTCTACAGTAGATTCTGTCTTCTTGTGAGC
TGCTTTAAAGTGTACCACTTACTTAGCAACCCTGTCAAACCAGTAAGATC
CCACCCGCCTCGTCCTTATTAATATGGGTGGTGCCAAAGGCTAAAAGAAG
ATATCTTAAAGCTATATACAATTTTCTTTCTAGTACTGTATCACAGTAAA
TTATTAATTCAATGCGTTTTTTTTAGTGACGAGAATCCAGTGAATCCATT
ACCTTTCAATATCTTTGATACGGGAGCAGCAATATCATTCAACAATAATA
GTATTTTTGCATGATAAAAATCATTAATATTGTGTTTTTATTGTGATTTA
TGAAATGTTTTATGAATTGGCTTCTCACAAAAATGACATTTTGGCTTCAT
TTGATTATTCCTGATAATTCATAACATTTTTTCAAATCATTACACTACTA
TACAGTTATCTAAGAATTCCAATCTTAATAACTCAATATTTATTGAATTT
CAAAATTCTTTTAGGTCTGTGTAATTTAAGATGCACGATTCATGCATAAT
TCATGCTAATCATTTTAATGCATGCATATTATAGATAATGTTTAAGTGGG
TTCTTTTGGTTTGCTTAAAAGTTAAAAAATATAACATTCGTATTTTCGTC
TGATCTAAATATTTTTCGACTGTTTTTATTTATCAAAACTCAAGATTTAC
TAAGGCAAATTTCTGAGGAAGTAGGACAAGAGAGGTATTTCCAAACTTTG
TAAACCCTCACTTTATGGGTATTTCTGTTAATTTAACTCACCCAGTCATT
CTTTTATAAAAAATGAGTTGGGTAAAAAGTTAAAACATTCAGTAGAAATT
GTTTAGTTATAAATATTGAAATATAGCGTAAAAAAATAATGCCTTTAAAC
GGCTGGTTTATTTTGAATTCAAAATTGTATTTCTCTATTGATAGGCTCTA
CAGTTTCTGCAAATCCACACAACTCTACTGTCGAATTTGGAGCCAACTCT
CAGAATGATCAGCTTCTTTCTTCAGTCACGCATCCCTGGAATCATGGTAA
GTTTGTTGATAAGTGAAAATTTTTAATTAAAGCAGGTTTGTGAAAATTTA
TCATTCAAGCATATTAAAGAATGTTCTCCTAGTATATTCCTTTCTTTTGA
CACTTTGTATTGATGAAATGTATTTTGTTATTGACAGCTTCAATGGATTC
TGCCGCCGCTCGCAACACCTCTTTTGAATATTCAACAAATCATGTGAACA
ATCAACTCAGTTCTTTGATTGCACCTGCTTCAATTGAGGGTATGTTTTTA
ATTGTGTTGAGTGTTTATACCCCCCCCCCCCTTAAAAGTGAGGTTACACC
CCAAAAAAGATGGAGGCTAAATCTGTTTCAAATATTTCGGGGGGGGGGGC
TGGCTAGAGTTTACCATACTTTTGACTTTCAAGTATAATCGGTCTGTCTC
TTTCTGTCGTTTTGTATTTTCTCTTTTTTACTCTTTTTTTTTGCGAGAAT
ATTTTACTGATATGCTTCAGGAAGAAGTTTAAAAGTAAAAGACTGAGGAC
TGAAATTCAATGGGGATTGATATACCCACGTTTTTTATGACTGGGTATTC
AAATTCCATTATTTTCAAATCAGAGAAGTCACAATGTTTTGCAGTGAGGA
TTTATTTATTTAATCATTTTCAGCGGAGATAGAAACTTCCACTGGAGATG
ATATTTCCAGTGGGAGGGGCTCCTGCAAGAACAGTATTTTAAACTTAATT
TCTAATGGAGATGAAAGTGCACTGTATTCTTGTGATATTTCAGTGTTTTC
AGGGTGATAATAGTACAGTTAAAGGTTCGTATGAGTGATTACTTTTAGAA
GGATCGTTTAATGATTTTTCTAGTACTGATCACTCATAAAGAAGAACAAA
CACCCAGGGGTGGATCTAGCGAAACTGCTTTATGAGGGTAACTCGAATCG
GGCAAGCAATTAATAAAGAGTTAATTAGTTAAAAAATTATTTGCTTTTAC
AGGCTTTAATAATTCATTTGAGGAAAGTATCTCATATAATTTAAAAAGAG
AGAATTGACCATATTACTTGGAGGTATATTGATCATTTGTGGTTTTTTCT
TACGCACGCGCACAATAGCACGTCAAAAAAACACTTTTCAGCCTGTACTC
GTCAATTGACAATGGCGCGCACAGGCCCCGACAAAGTCAAATCTTTTCGA
CCAGTTGCTTTTAAAATTTTTGGCTTGGACCTAAACCTAGGCTGACGCTA
TGTATCAGTCAACAAAGTTCGAATACAGTAGTTACTGCTTGACACACCTA
GAATCGAGTCTGACAAAGACGCGCCTTCGTTAATCTCAGAATGTACGTAT
GTACATCAGATTATATGAATTAACTGTAACAAAAATCAACTCCTTAAACT
CGGAAGAAAACTGATAATTATCATGGCGACTAAGTAAAGCTTTTCCCAAT
ATCACTTTTTGTAAAAAAATATAGCCTTGACTTCCACAAAAAAAAGCCTT
TGATTTCCATCTTAGATAATGAAGTTGCGCGCAGTGCATTTTAACACGTT
ACTATTGTCAATTTATTATTTGTTCTTGGTAGATTCAACATATTCTACAG
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAAATTCCATTATTTTCAAATCAGAGAAGTCACAATGTTTTGCAGTGAG
GATTTATTTATTTAATCATTTTCAGCGGAGATAGAAACTTCCATTGGAGA
TGATATTTCCAGTGGGAGGGGCTCCTGCAAGAACAGTATTTTAAGCTTAA
TTTCTAATGGAGATGAAAGTGCACAGCCACTGTATTCTTGTGAAATTTCA
GTGTTTTCAGGGTGATAATAGTACAGTTAAAGGTTCGTATGAGTGATTAC
TTTTAGAAGGATCGTTTAATGATTTTTCTAGTACTGATCACTCATAAAGA
AGAACAAACACCCAGGGGTGGATCTAGCGAAACTGCTTTATGAGGGTAAC
TCGAATCGGGCAAGCAATTAATAAAGAGTTAATTAGTTAAAAAATTATTT
GCTTTTACAGGCTTTAANGAATCGAATCGAATCGGACAAGCAATTAATAA
AGAGTTAATTAGTTAAAAAATAGCTTAACTATTTTCTTTTACAGGCTTTG
ATAATTTATTTGAGGAAAGTATCTCATATAATTTAAAAAGAGAGCATTGA
CCATATTACTTGGAGGTATATTGATCATTTGTGATTTTTTCTTACGCACG
CGCACAATAGCACGTCAAAAAAACACTTTTTAGCCTGTACTCGTCAATTG
ATAATGGCGCACACAGGCCCCGACAAAGTCAAATCTTTTCGAACAGTTGC
TTTTAAAATTTTTGGCTTGGACCTAAACCTAGGCTGACGCTATGTATCAG
TCAACAAAGTTCGAATACAGTAGTTACTGCTTGACACACCTAGAATCGAG
TCTGACAAAGACGCGCCTTCATTAATCTCAGAATGTACGTATGTACATCA
GATTATATGAATTAACTGTAACAAAAATCAACTCCTTAAGCTCGGAAGAA
AACTGATAATTATTATGGGGACTAAGTAAAGCTTTTCCCAATATCACTTT
TTGTAAAAAAATATAGCCTTGACTTCCACAAAAAAAGCCTTTGATTTCCA
TTTTAGATAATGAAGTTGCGCGCAGTGCATTTTAACATGTTACTATTGTC
AATTTATTATTTGTTCTTGGTAGATTCAACATATTCTACAGTTTCTCACA
ACACTTCTTTGGTTGCAAGCTCTTCGAATGACCAGCTTCTTTCTTCGATT
GCACCAAACTCAATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030413XLOC_030413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047778-exon-scaffold_136-1575043694:219286..220435TCONS_00047778-exon-scaffold_136-1575043694:219286..220435Clytia hemisphaericaexon
TCONS_00047778-exon-scaffold_136-1575043694:218540..218641TCONS_00047778-exon-scaffold_136-1575043694:218540..218641Clytia hemisphaericaexon
TCONS_00047778-exon-scaffold_136-1575043694:218297..218398TCONS_00047778-exon-scaffold_136-1575043694:218297..218398Clytia hemisphaericaexon
TCONS_00047778-exon-scaffold_136-1575043694:215717..215812TCONS_00047778-exon-scaffold_136-1575043694:215717..215812Clytia hemisphaericaexon
TCONS_00047778-exon-scaffold_136-1510915933:219286..220435TCONS_00047778-exon-scaffold_136-1510915933:219286..220435Clytia hemisphaericaexon
TCONS_00047778-exon-scaffold_136-1510915933:218540..218641TCONS_00047778-exon-scaffold_136-1510915933:218540..218641Clytia hemisphaericaexon
TCONS_00047778-exon-scaffold_136-1510915933:218297..218398TCONS_00047778-exon-scaffold_136-1510915933:218297..218398Clytia hemisphaericaexon
TCONS_00047778-exon-scaffold_136-1510915933:215717..215812TCONS_00047778-exon-scaffold_136-1510915933:215717..215812Clytia hemisphaericaexon
TCONS_00047778-exon-scaffold_136-1491911889:219286..220435TCONS_00047778-exon-scaffold_136-1491911889:219286..220435Clytia hemisphaericaexon
TCONS_00047778-exon-scaffold_136-1491911889:218540..218641TCONS_00047778-exon-scaffold_136-1491911889:218540..218641Clytia hemisphaericaexon
TCONS_00047778-exon-scaffold_136-1491911889:218297..218398TCONS_00047778-exon-scaffold_136-1491911889:218297..218398Clytia hemisphaericaexon
TCONS_00047778-exon-scaffold_136-1491911889:215717..215812TCONS_00047778-exon-scaffold_136-1491911889:215717..215812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_136supercontigscaffold_136:215717..220435 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.144156	0.271984	0.142446	0.158339	0	0.178334	0.273767	0.598845	0.362162	0.179177	0.775763	0.115017	1.86821	1.79641	0.975673	0.530289	0.293131	1.13657	0.422508	0.32906	0.185082	0	0.482851	0.332574	0.594954	1.99115	0	0.0527643	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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