TCONS_00047783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047783
Unique NameTCONS_00047783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length886

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047783 ID=TCONS_00047783|Name=TCONS_00047783|organism=Clytia hemisphaerica|type=transcript|length=886bp
gttAATGAAAAATGTATTGTTGTCATTGCGCATATCCCATTGCATCTAAT
CAAGTTTTTTGTACTGCATGTGGTAAACGAAATACTACACAAAATACTGG
TGCCAGCACAAGTACATCAAAtcaaggaaaaaaaacattccagCAATTCT
TAGAAGAGAAGAAGACTGATCGTATATGcaagtccaaaaaacaaaagatt
tctaAAGTTACTGTTAATGTCTCTGTTTTAAATGAATTTGTTGGGCAACA
GTTCGAGACTTATTACAAACAAGTACCAAACTCCCGTCTCCCACTTGAAT
GTGAGCCTCAATGGGACTACTACAAATTACGAGAAGCTGCTTTTGATAAA
CAAAAACGTTACAACAAACTGATTGCATCAAAACAGCTGGAAGATGTAAA
ACTTGTATATAATAAGGATGGTGATATTTGTAAAACAATTCCAGGAACTA
ACATTCCATTCACATTGGAAAAATATCAAAGAGATATCTGTAAGAAATAC
AAAGATATGTTGTTTTATCTGTTGCCAATGTTCATTGAAGACGAAGACGA
TGATGAACCGCTTCCATCTGCACTAAGCAAAAGACAAAATGACGAGAATC
CAGTGAATCCATTACCTTTCAATATCTTTGATACGGGAGCAGCAATATCA
TTCAACAATAATAGTATTTTTGCATGATAAAAATCATTAATATTGTGTTT
TTATTGTGATTTATGAAATGTTTTATGAATTGGCTTCTcacaaaaatgac
attttggCTTCATTTGATTATTCCTGATAATTcataacattttttcaaat
cattACACTACTATACAGTTATCTAAGAATTCCAATCTTAATAACTCAAT
atttattgaatttcaaaattcttttaggtctgtgta
Run BLAST on NCBI

transcript from alignment at scaffold_136:219063..220434-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047783 ID=TCONS_00047783|Name=TCONS_00047783|organism=Clytia hemisphaerica|type=transcript|length=1372bp|location=Sequence derived from alignment at scaffold_136:219063..220434- (Clytia hemisphaerica)
GTTAATGAAAAATGTATTGTTGTCATTGCGCATATCCCATTGCATCTAAT
CAAGTTTTTTGTACTGCATGTGGTAAACGAAATACTACACAAAATACTGG
TGCCAGCACAAGTACATCAAATCAAGGAAAAAAAACATTCCAGCAATTCT
TAGAAGAGAAGAAGACTGATCGTATATGCAAGTCCAAAAAACAAAAGATT
TCTAAAGTTACTGTTAATGTCTCTGTTTTAAATGAATTTGTTGGGCAACA
GTTCGAGACTTATTACAAACAAGTACCAAACTCCCGTCTCCCACTTGAAT
GTGAGCCTCAATGGGACTACTACAAATTACGAGAAGCTGCTTTTGATAAA
CAAAAACGTTACAACAAACTGATTGCATCAAAACAGCTGGAAGATGTAAA
ACTTGTATATAATAAGGATGGTGATATTTGTAAAACAATTCCAGGAACTA
ACATTCCATTCACATTGGAAAAATATCAAAGAGATATCTGTAAGAAATAC
AAAGATATGTTGTTTTATCTGTTGCCAATGTTCATTGAAGACGAAGACGA
TGATGAACCGCTTCCATCTGCACTAAGCAAAAGACAAAAGTAAGCAATCA
ATATCTTTTGGTTTACCTTTCAGAAACAATTTTTGGCAGAATTTAAATTT
TTTTTCTATTCAGGAAAAGTTTTGAGGAAATGTAAATAAAACATTACAAA
TTTTGAAGATTGTTGCAGGAGAAAGATTCTACCAGGATTTCTTTCAAAAA
TAATTCAAAATTGGGCTTAAAAGTCAAAAATGCTAACAAAAATTTGACAA
AGTTTGACGTCTTTGAGATTGTGACCATATTTTTTCCATGAGGAAATTAA
GACACCAAATTTGACCCTGGTCTACAGTAGATTCTGTCTTCTTGTGAGCT
GCTTTAAAGTGTACCACTTACTTAGCAACCCTGTCAAACCAGTAAGATCC
CACCCGCCTCGTCCTTATTAATATGGGTGGTGCCAAAGGCTAAAAGAAGA
TATCTTAAAGCTATATACAATTTTCTTTCTAGTACTGTATCACAGTAAAT
TATTAATTCAATGCGTTTTTTTTAGTGACGAGAATCCAGTGAATCCATTA
CCTTTCAATATCTTTGATACGGGAGCAGCAATATCATTCAACAATAATAG
TATTTTTGCATGATAAAAATCATTAATATTGTGTTTTTATTGTGATTTAT
GAAATGTTTTATGAATTGGCTTCTCACAAAAATGACATTTTGGCTTCATT
TGATTATTCCTGATAATTCATAACATTTTTTCAAATCATTACACTACTAT
ACAGTTATCTAAGAATTCCAATCTTAATAACTCAATATTTATTGAATTTC
AAAATTCTTTTAGGTCTGTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030413XLOC_030413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047783-exon-scaffold_136-1575043694:219846..220434TCONS_00047783-exon-scaffold_136-1575043694:219846..220434Clytia hemisphaericaexon
TCONS_00047783-exon-scaffold_136-1575043694:219063..219359TCONS_00047783-exon-scaffold_136-1575043694:219063..219359Clytia hemisphaericaexon
TCONS_00047783-exon-scaffold_136-1510915933:219846..220434TCONS_00047783-exon-scaffold_136-1510915933:219846..220434Clytia hemisphaericaexon
TCONS_00047783-exon-scaffold_136-1510915933:219063..219359TCONS_00047783-exon-scaffold_136-1510915933:219063..219359Clytia hemisphaericaexon
TCONS_00047783-exon-scaffold_136-1491911889:219846..220434TCONS_00047783-exon-scaffold_136-1491911889:219846..220434Clytia hemisphaericaexon
TCONS_00047783-exon-scaffold_136-1491911889:219063..219359TCONS_00047783-exon-scaffold_136-1491911889:219063..219359Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_136supercontigscaffold_136:219063..220434 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.154229	0	0.489841	0.467602	0	0.59861	0.313252	8.18016e-07	1.17371	0.373088	1.49009	1.71624	0.303224	0.970749	0.442979	0.60685	0	0	0	0	0.204079	0	0	0.883575	0	0	0.116329	0.296303
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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