|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047798 ID=TCONS_00047798|Name=TCONS_00047798|organism=Clytia hemisphaerica|type=transcript|length=2488bpRun BLAST on NCBI transcript from alignment at scaffold_136:244200..286915- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047798 ID=TCONS_00047798|Name=TCONS_00047798|organism=Clytia hemisphaerica|type=transcript|length=42716bp|location=Sequence derived from alignment at scaffold_136:244200..286915- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047798 vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3) HSP 1 Score: 118.627 bits (296), Expect = 3.450e-27 Identity = 105/313 (33.55%), Postives = 137/313 (43.77%), Query Frame = 2
Query: 176 NGTWAPWGDWGGCDKPCGTGFRYRWRKCTNPAPQNGGLDCAGDYREHKTCNTN-LCERELGGT-WRTTKLCKREQGYCLGPNGRKPSRRGVRELSSEMRGWKIWERKNCMQKCLQTRGITACEMPFGSYRTHDYSRYWTNKGCYGHTAPVTRGN-------GYEKTYCWV--LSKCKTDGV------------------WSQWSSWTGCPVCGPSGQRNRTRTCTDPEPLYGGSDCPKTDKHTEIENCEKKPPCPIHGKWSKWGFWGKCXXXXXXXXXXXXXXXXNPAPQHGGLDCTDSDTAVQNCNTKPCPD 1027
NG W PW W C CG GF+ R R C+NP P++GG C G RE + CN + LC + T W + C + G G +RR + E + G + E ++C T P+ D ++ + Y A + N E YC S C TDG+ WS W+SW+ C G RNR R C +PEP YGG C E + C PCP+ G WS W W KCS +CG G RTR+C+NPAP +GG C T CNT+PCP+
Sbjct: 595 NGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYCNEHLLCPPHMFWTGWGPWERCTAQCG------GGIQARRRICENGPDCAGCNV-EYQSCNTNPCPELKKTTPWTPWTPVNISDNGGHYEQRFRYTCKARLADPNLLEVGRQRIEMRYCSSDGTSGCSTDGLSGDFLRAGRYSAHTVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPC--LGPSLEYQECNIL-PCPVDGVWSCWSPWTKCSATCGGGHYMRTRSCSNPAPAYGGDICLGLHTEEALCNTQPCPE 897 The following BLAST results are available for this feature:
BLAST of TCONS_00047798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.