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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047804 ID=TCONS_00047804|Name=TCONS_00047804|organism=Clytia hemisphaerica|type=transcript|length=8588bp protein sequence of TCONS_00047804-protein >TCONS_00047804-protein ID=TCONS_00047804-protein|Name=TCONS_00047804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=701bp MMTQTLLEESKLLTRTNVFDESANAENLALIKSNSDGETKKTNRSPLKKFRun BLAST on NCBI transcript from alignment at scaffold_136:314315..336652- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047804 ID=TCONS_00047804|Name=TCONS_00047804|organism=Clytia hemisphaerica|type=transcript|length=22338bp|location=Sequence derived from alignment at scaffold_136:314315..336652- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_136:314315..336652- >TCONS_00047804 ID=TCONS_00047804|Name=TCONS_00047804|organism=Clytia hemisphaerica|type=CDS|length=18954bp|location=Sequence derived from alignment at scaffold_136:314315..336652- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00047804 vs. Swiss-Prot (Human)
Match: TBC14 (TBC1 domain family member 14 OS=Homo sapiens GN=TBC1D14 PE=1 SV=3) HSP 1 Score: 424.861 bits (1091), Expect = 2.716e-128 Identity = 212/374 (56.68%), Postives = 275/374 (73.53%), Query Frame = 2
Query: 1016 STTALIFENRPLHLPPKSAKEEQKHREQYENMIAFAXXXXXXXXXXXXXXXXXXXXXXNQISNIVTRWKEDIIPNWHNCKSTRKVRDLWWAGVPPSVRGKVWSLAIGNDLNITKELFQIFSANARDRIRNQKNPEPVANLHDSESSLVVSKENTVGLITLDVSRTFPSLCIFQKGGPYHEPLKNLLAAYTCFRPDVGYVQGMSFLAAMFLLNLDTFDAFVAFANLLNRPCQMAFFMVDQPMMDAYYRTFDVLLEDQIPKLYTHMKKQCLSHDIYLIDWIFTLFSKSLPLDTACRVWDLFCRDGEEFLFRTALGILLMSEDVLLEMEFFRLAQYLTKLSNTITSDVLFKYIEKINFSK--QKLTQTLSYYKQIAR 2131
STTALI E+RP +LP K A+E QKHR+QYE M+ AK++ELK+ + KK+L+ER ++E I N V W +I+PNW +RKVRDLWW G+PPSVRGKVWSLAIGN+LNIT ELF I A A++R R+ D+ S +E ++ LI LD+SRTFP+LCIFQ+GGPYH+ L ++L AYTC+RPDVGYVQGMSF+AA+ +LNLDT DAF+AF+NLLN+PCQMAFF VD +M Y+ F+V E+ +PKL+ H KK L+ DIYLIDWIFTL+SKSLPLD ACR+WD+FCRDGEEFLFRTALGIL + ED+L +M+F +AQ+LT+L + ++ LF I I +K Q L+ ++ +R
Sbjct: 310 STTALILEDRPANLPAKPAEEAQKHRQQYEEMVVQAKKRELKEAQRRKKQLEERCRVEESIGNAVLTWNNEILPNWETMWCSRKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFS-AADREASLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPEDLPAEELFASIATIQMQSRNKKWAQVLTALQKDSR 682 The following BLAST results are available for this feature:
BLAST of TCONS_00047804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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