TCONS_00047819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047819
Unique NameTCONS_00047819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047819 ID=TCONS_00047819|Name=TCONS_00047819|organism=Clytia hemisphaerica|type=transcript|length=314bp
GTCTGAGGTAGATATACGATACATAAAAAACCATATCAAGCGCGTAAGAC
ACcaattgaaaaatcaaagtttgTTGATATAAAAAGATGGCTGATTTTTC
GATGTACGTTGATCGTTGAAGTAATCCAATCAATAAAACATGCCAAAATA
ATGTCCAAAAACATACGAATCccaaaattatagcattttttCTCGCCTCT
GAGGGCATTATCTCTGTCCATTGGTTTTGGACCCCCGTATCCGGGAATGT
TTGATGATTATATTCTGTTTTAATTGAAACTCCATAAGCATGATTTATCC
AGATGCAAAAATAT
Run BLAST on NCBI

transcript from alignment at scaffold_136:363240..363553

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047819 ID=TCONS_00047819|Name=TCONS_00047819|organism=Clytia hemisphaerica|type=transcript|length=314bp|location=Sequence derived from alignment at scaffold_136:363240..363553 (Clytia hemisphaerica)
ATATTTTTGCATCTGGATAAATCATGCTTATGGAGTTTCAATTAAAACAG
AATATAATCATCAAACATTCCCGGATACGGGGGTCCAAAACCAATGGACA
GAGATAATGCCCTCAGAGGCGAGaaaaaatgctataattttggGATTCGT
ATGTTTTTGGACATTATTTTGGCATGTTTTATTGATTGGATTACTTCAAC
GATCAACGTACATCGAAAAATCAGCCATCTTTTTATATCAAcaaactttg
atttttcaattgGTGTCTTACGCGCTTGATATGGTTTTTTATGTATCGTA
TATCTACCTCAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030431XLOC_030431Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047819-exon-scaffold_136-1491911889:363240..363553TCONS_00047819-exon-scaffold_136-1491911889:363240..363553Clytia hemisphaericaexon
TCONS_00047819-exon-scaffold_136-1510915933:363240..363553TCONS_00047819-exon-scaffold_136-1510915933:363240..363553Clytia hemisphaericaexon
TCONS_00047819-exon-scaffold_136-1575043694:363240..363553TCONS_00047819-exon-scaffold_136-1575043694:363240..363553Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_136supercontigscaffold_136:363240..363553 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	3.4743	1.6263	0.853958	0	1.36892	2.69963	12.8054	10.7322	9.0151	13.3797	1.77506	1.29956	6.82257	3.75754	4.24578	1.43373	0.774616	2.11271	7.25349	6.79724	0.463183	0.494321	2.24955	2.29194
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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