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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047821 ID=TCONS_00047821|Name=TCONS_00047821|organism=Clytia hemisphaerica|type=transcript|length=474bp
TATCTCTTGGGTAATGATTACTCTtttgtttttagctttttcttttgtta
cgtTACTTGTCGATTTCATTTTCGAATCACTTAATATCGATTTCAATCGG
TCATTAGGGAATTGTATATTTGAGATTGATGGCGTTCGAAATCAGATAAA
ATCATGTCAGTTTTTCATGTGAAAGTTAAAAGAGCGTTTGTGAAGCGAAA
AGTTGGCAAGTCTTGAAGACACGTTTTACGAAAGTCAAAATGATTTATTA
TATGGAAACAACTTTATTTAAgGGAACTGCTACTACAGAAGTAAATTCAC
AAAACCCTCAATCGAATTCAAGCCTAGAAATATTTGTTGTACATTTGAGG
TCGCAGACAATATATAATTCAATATGAAATTGAGTCAAGGTTAGTCgata
atttaatttttacagGTACCAGCATTTTTTCCATTAGTTACGACTATACT
TTAAATACACTAGCAAAGAATTAT Run BLAST on NCBI transcript from alignment at scaffold_137:4941..6181+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047821 ID=TCONS_00047821|Name=TCONS_00047821|organism=Clytia hemisphaerica|type=transcript|length=1241bp|location=Sequence derived from alignment at scaffold_137:4941..6181+ (Clytia hemisphaerica)
TATCTCTTGGGTAATGATTACTCTtttgtttttagctttttcttttgtta
cgtTACTTGTCGATTTCATTTTCGAATCACTTAATATCGATTTCAATCGG
TCATTAGGGAATTGTATATTTGAGATTGATGGCGTTCGAAATCAGATAAA
ATCATGTCAGTTTTTCATGTGAAAGTTAAAAGAGCGTTTGTGAAGCGAAA
AGTTGGCAAGTCTTGAAGACACGTTTTACGAAAGTCAAAATGATTTATTA
TATGGAAACAACTTTATTTAAggtgagatttttcaaattctatcCTTTAC
AATCCATTCTTGTGACTTGTATGAATTTTTTACATTACTTCATTTTGTTC
TGCGATGGGATTAGGTTAAGATTTTGGCACAATTTTATACAATTTTTGAA
CCTTTGGGAATCTTTAAATTCTTATTCACTTACTATtactttatttactt
atttgtTGTTGAAGTTTTTGAACAGGTGGGATTTCTCCACTTAGGAAAGA
CAGGAAACTGTGTGTGCGAACCATAAGGGTAGCCTAcctaaaaagttctt
taaaggAGTACAAATTTCTACGTTAGTCTCttaaagggtcccaaaatcac
tcAAATCGGAAATCTCTCTCAAACTGtcacttttcgaaaattttgataat
ttttttcgaattttgccTCGGATATACCTGTCACCTTGCAAATCTTAGTA
TCTCCTCCCCCGGCGAATTGTTGAAgagatttttgaagtttttgacgtTC
CTTTTGAGATTGATAATTTTCATCTCTATGGGTTTTTTATATCACTGATA
CTTTGTgaatttcttgtaaaaaaaactttttttccggacTTTATTTGTAC
TTTCAAATgtgtaaacacttttttctttgCAATTTTCTGATCTGTTTTTT
CTAAAACCGCAGTTTTCGGACCgttttgtccaaaaaattaaaattttaga
atttttaagcttattctgactCTTTTTTAAAATGAATTCTAGTTTGATAC
TTcaagtcagatttaaaaaatatatattttcttttacaGGGAACTGCTAC
TACAGAAGTAAATTCACAAAACCCTCAATCGAATTCAAGCCTAGAAATAT
TTGTTGTACATTTGAGGTCGCAGACAATATATAATTCAATATGAAATTGA
GTCAAGGTTAGTCgataatttaatttttacagGTACCAGCATTTTTTCCA
TTAGTTACGACTATACTTTAAATACACTAGCAAAGAATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047821-exon-scaffold_137-1491911889:4941..5212 | TCONS_00047821-exon-scaffold_137-1491911889:4941..5212 | Clytia hemisphaerica | exon |
| TCONS_00047821-exon-scaffold_137-1510915933:4941..5212 | TCONS_00047821-exon-scaffold_137-1510915933:4941..5212 | Clytia hemisphaerica | exon |
| TCONS_00047821-exon-scaffold_137-1575043694:4941..5212 | TCONS_00047821-exon-scaffold_137-1575043694:4941..5212 | Clytia hemisphaerica | exon |
| TCONS_00047821-exon-scaffold_137-1491911889:5980..6181 | TCONS_00047821-exon-scaffold_137-1491911889:5980..6181 | Clytia hemisphaerica | exon |
| TCONS_00047821-exon-scaffold_137-1510915933:5980..6181 | TCONS_00047821-exon-scaffold_137-1510915933:5980..6181 | Clytia hemisphaerica | exon |
| TCONS_00047821-exon-scaffold_137-1575043694:5980..6181 | TCONS_00047821-exon-scaffold_137-1575043694:5980..6181 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_137 | supercontig | scaffold_137:4941..6181 + |
Blast
The following BLAST results are available for this feature:
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