|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047828 ID=TCONS_00047828|Name=TCONS_00047828|organism=Clytia hemisphaerica|type=transcript|length=2412bp
aattttacaaatcttAGACAACTGTAATTTAAATAGACACCTATCACTGC
ATGAAAAAAGGCGTTTTCGCAAAATAGTTATTCTGGTAGAGTTGATGTTT
ACTTGGGGTATACGCAGCGTAGAGTTAGATTCATGTTTACACAAACTGAA
AGACGATGCTTACGTAAGTTATGATATCCTGAAACTACGATCGGGTTTGC
GTTATTTTACGAAGAGATAATATCTGCGTATTTTATTACCAGAGCGTTAA
GATAGATTCATGTTTACGCAAACCGAAAGACAATGTCTTCGCAGGTTATA
ATATCTTGGGGTTCTACAATTAGCCAGCtttccataacttttgataattA
CATAACTTTGATGTATAGGAACACGACATCGTGCTCTCAATTTTCAAGCA
TAACATTTGGTGATTACTCCCAATTTTGTTTCCCtaacaaaggaaaaatt
atCATATTTTCGTGCGATTTCGACTTTTCCGATCAACTTTTCACCATAAA
ATGCCTAGTAACGAAAAGGATCACACAGGGCGAACAAAAATGTGCAAGAA
AGTAGAAAAAAGTGACATGTCCAGGATGACAGAGAAGGACAATCGCCTAA
AGCAAAGCAAGTGGACAATTAATGccaggaaaattattttctaaaaatat
atgGAAGAATGCCGTCGGGGCCAGTTCAAAAGCAAAAAGGCTACACCTGA
AAGAAGATTTGGATGGACTTTTTTATTGACCAGTTCCAAATTGTGACAGT
TTTTCTTTTACAACCAAAAGAGGGTGCCGTAAACACGTTTTTACCATAGG
CATGGATGGTACTACTTTCTCGAAACGAGACTTGACCCAAAAGTTGCTTT
GCCAGAACTTTCGACAAGGAGTGAAAAACTAAATAAATCTAGGAGGAGTA
GAACGAACAATATGCCAATGTTTTCGAAAGGCTGTAAATTTGATAAGATG
TTCAAGCTCTGGCTCTGCAGCCCTGGTGGAAGTCCTGCTTGGACATGCAT
GTTATCAGACTCAAGTTACAAATTTCACCCTTCAAAGCAGATTGCTACAC
TTTCTGGCAGggcaaaaaaatgaatattatttgaatgataaatttcaaaa
tattgtaaaGATCATTGTTTGATTCTAAAACTTTATGTGAATTTGAGGTG
GAATTAGAAATATGCAGAtttcatattcattttttttaggaaaatcgtGT
ATAAAATAATTCACATGAAAAAGTTACAAGTTTTTCCATATTTTCTATCT
GAACCACTAAAAAGTGAACGGCTTAGTGTTTGGGGAATCGATAAGGCAGG
TATGGCCATTAATTTGTCAGTATATGAACAATGGTTTTGTATAGTAAATT
GTAATAGGGATTGTCTAATCTAGACTATAAATACAACGCCCAGATTATCA
AACAGCAAATATCCGCAACGATATGTCAAATACTCAACATCAACGTGCCA
tttcagcacttttcgaaagAGACGTGCTATGTTTTTCACAAGGCACGCTT
GTAGATCAATTAAGAGGTGAGTTTTACCCATTTTTAACAATTAAACCTCC
ATTCAATTTGATAATTTTATGTTAAAACTGAAAAGAGGGGATAACGAAAA
TCAGAACAGTAGCCCGTCAAAGAAACAATTGAAATCAGTGATGACAATAA
AGAAGAACAAACTGAAAAGAAAAGATCTCCGCCAAGAAAAcggaattgaa
aacaaaatatgtaCAAAAGTTCATCGCTTCGTGCATTTTCTAACATAAAT
CGACATAAAGGCAAAAATTGAAGTAGAAGAAGGaactgaaattttctgta
aatattGTAAATAAAAAGTAACTTTTAAAAAAGATGACTCTCAATTCATT
GTTTGAACCCTTTTAAGATAGCTGGTACCAGGCCAAACTCACGCCTCACA
ATGGACCGTCATTGGAACTACACCCGTATGCCACTCCCTTTCAAATCCAC
ACTTTACTCATAACATTTAATCTCACTTTTGATTTGAGACTTGATACTTT
TCTCAAGTGTTTAGAATATATTACAAGCGCACAAACACGATCCGCCCtca
aaattggcttttaaaaccGTCAATGGAATTATACCCGTATGCTAGACCGA
GGGTTAAGCCGTATAATTTGCTTATGCATGGTACTCAAAGTCAAGGCATT
AAATAGCAACTTAAGCCAAAGTCAAAAGTCGATAAAACAAAATACCGAGT
CGGTCTGGGCAACAAAATTGGACACAAATGGAGAACTATTCAAACTGATT
CTGTTCAACTTCTTATAAATCCTTTGGGTATATCACagaatttccacctg
tcggaaaaaatcaaaaatgtatggtttacaaaaatgtctctCACAGTTGA
AGCAATGAAGATATTGAAATTCTGTTTAAAGGTTCTAAAAGATAAAAGGT
TTTATcattaac Run BLAST on NCBI transcript from alignment at scaffold_137:54904..57315 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047828 ID=TCONS_00047828|Name=TCONS_00047828|organism=Clytia hemisphaerica|type=transcript|length=2412bp|location=Sequence derived from alignment at scaffold_137:54904..57315 (Clytia hemisphaerica)
gttaatgATAAAACCTTTTATCTTTTAGAACCTTTAAACAGAATTTCAAT
ATCTTCATTGCTTCAACTGTGagagacatttttgtaaaccatacattttt
gattttttccgacaggtggaaattctGTGATATACCCAAAGGATTTATAA
GAAGTTGAACAGAATCAGTTTGAATAGTTCTCCATTTGTGTCCAATTTTG
TTGCCCAGACCGACTCGGTATTTTGTTTTATCGACTTTTGACTTTGGCTT
AAGTTGCTATTTAATGCCTTGACTTTGAGTACCATGCATAAGCAAATTAT
ACGGCTTAACCCTCGGTCTAGCATACGGGTATAATTCCATTGACggtttt
aaaagccaattttgaGGGCGGATCGTGTTTGTGCGCTTGTAATATATTCT
AAACACTTGAGAAAAGTATCAAGTCTCAAATCAAAAGTGAGATTAAATGT
TATGAGTAAAGTGTGGATTTGAAAGGGAGTGGCATACGGGTGTAGTTCCA
ATGACGGTCCATTGTGAGGCGTGAGTTTGGCCTGGTACCAGCTATCTTAA
AAGGGTTCAAACAATGAATTGAGAGTCATCTTTTTTAAAAGTTACTTTTT
ATTTACaatatttacagaaaatttcagttCCTTCTTCTACTTCAATTTTT
GCCTTTATGTCGATTTATGTTAGAAAATGCACGAAGCGATGAACTTTTGt
acatattttgttttcaattccgTTTTCTTGGCGGAGATCTTTTCTTTTCA
GTTTGTTCTTCTTTATTGTCATCACTGATTTCAATTGTTTCTTTGACGGG
CTACTGTTCTGATTTTCGTTATCCCCTCTTTTCAGTTTTAACATAAAATT
ATCAAATTGAATGGAGGTTTAATTGTTAAAAATGGGTAAAACTCACCTCT
TAATTGATCTACAAGCGTGCCTTGTGAAAAACATAGCACGTCTctttcga
aaagtgctgaaaTGGCACGTTGATGTTGAGTATTTGACATATCGTTGCGG
ATATTTGCTGTTTGATAATCTGGGCGTTGTATTTATAGTCTAGATTAGAC
AATCCCTATTACAATTTACTATACAAAACCATTGTTCATATACTGACAAA
TTAATGGCCATACCTGCCTTATCGATTCCCCAAACACTAAGCCGTTCACT
TTTTAGTGGTTCAGATAGAAAATATGGAAAAACTTGTAACTTTTTCATGT
GAATTATTTTATACacgattttcctaaaaaaaatgaatatgaaaTCTGCA
TATTTCTAATTCCACCTCAAATTCACATAAAGTTTTAGAATCAAACAATG
ATCtttacaatattttgaaatttatcattcaaataatattcatttttttg
ccCTGCCAGAAAGTGTAGCAATCTGCTTTGAAGGGTGAAATTTGTAACTT
GAGTCTGATAACATGCATGTCCAAGCAGGACTTCCACCAGGGCTGCAGAG
CCAGAGCTTGAACATCTTATCAAATTTACAGCCTTTCGAAAACATTGGCA
TATTGTTCGTTCTACTCCTCCTAGATTTATTTAGTTTTTCACTCCTTGTC
GAAAGTTCTGGCAAAGCAACTTTTGGGTCAAGTCTCGTTTCGAGAAAGTA
GTACCATCCATGCCTATGGTAAAAACGTGTTTACGGCACCCTCTTTTGGT
TGTAAAAGAAAAACTGTCACAATTTGGAACTGGTCAATAAAAAAGTCCAT
CCAAATCTTCTTTCAGGTGTAGCCTTTTTGCTTTTGAACTGGCCCCGACG
GCATTCTTCcatatatttttagaaaataattttcctggCATTAATTGTCC
ACTTGCTTTGCTTTAGGCGATTGTCCTTCTCTGTCATCCTGGACATGTCA
CTTTTTTCTACTTTCTTGCACATTTTTGTTCGCCCTGTGTGATCCTTTTC
GTTACTAGGCATTTTATGGTGAAAAGTTGATCGGAAAAGTCGAAATCGCA
CGAAAATATGataatttttcctttgttaGGGAAACAAAATTGGGAGTAAT
CACCAAATGTTATGCTTGAAAATTGAGAGCACGATGTCGTGTTCCTATAC
ATCAAAGTTATGTaattatcaaaagttatggaaaGCTGGCTAATTGTAGA
ACCCCAAGATATTATAACCTGCGAAGACATTGTCTTTCGGTTTGCGTAAA
CATGAATCTATCTTAACGCTCTGGTAATAAAATACGCAGATATTATCTCT
TCGTAAAATAACGCAAACCCGATCGTAGTTTCAGGATATCATAACTTACG
TAAGCATCGTCTTTCAGTTTGTGTAAACATGAATCTAACTCTACGCTGCG
TATACCCCAAGTAAACATCAACTCTACCAGAATAACTATTTTGCGAAAAC
GCCTTTTTTCATGCAGTGATAGGTGTCTATTTAAATTACAGTTGTCTaag
atttgtaaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047828-exon-scaffold_137-1491911889:54904..57315 | TCONS_00047828-exon-scaffold_137-1491911889:54904..57315 | Clytia hemisphaerica | exon |
| TCONS_00047828-exon-scaffold_137-1510915933:54904..57315 | TCONS_00047828-exon-scaffold_137-1510915933:54904..57315 | Clytia hemisphaerica | exon |
| TCONS_00047828-exon-scaffold_137-1575043694:54904..57315 | TCONS_00047828-exon-scaffold_137-1575043694:54904..57315 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_137 | supercontig | scaffold_137:54904..57315 . |
Blast
The following BLAST results are available for this feature:
|
