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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047837 ID=TCONS_00047837|Name=TCONS_00047837|organism=Clytia hemisphaerica|type=transcript|length=888bp
AAGAAGAGTCAGCCACCAGCTCAAAACTGACATAGTCAACCAACAAAAGG
AGCTCAACTGCAACCCACTAAACGCAACCACCAAATACAAAGTAACACGC
AAGAAAGAAGCAAGACAGAAAACACTGTTACAGGACATCAGATCCCAGAT
GAACCACGACGAGCTTAGAGCAAACGATCTAGCCCAAGCCCAAGGAGCGT
CAAACTGGCTGACAGCATTACCCCTCAAAAATGAGAACTTTGTATTATCG
AAGAGAGAGTTTTTTGACGCAATTATAGTACGTTACAGATGGCAATTGAA
ACACTTGCCTAGTCACTGTGCATGTGGTAAAGTTTACACTGTCGAGCATG
TCTTATCCTGTGCCAAAGGGGGTTTTGTCTACCAGAGGCATAAGGAACTC
AGGGACACTATCGCTAAGCTGATCAGTGATGTCAAGAAAGACGTCACAAT
AGAACCACAACTCGAGCCACTTACAGGAGAGGACCTGCCAACCGGAACAA
TCACCGAACCCGGAGCAAGAGCTGATATAAGCGCGATGGGGTTCTGGACT
AGAGGCCAGAGAGCATTTTTTGATGTCAGGGTATTCAATGCCTACGCTCA
ACGGTATTCTAGGAAGAGCCTCAAAAGCGCTTTCGAAGCAAATGAAAGAG
AGAAGAAAACCCACTATAACCATCGAATCATAAACGTGGAACAAGGATCC
TTCACACCCCTAATCTTCACAACCAACGGGGGAACCGCTAGAGAAGNaaa
aacaaaaaaaaacaaaaaaaaacaacaaaaaaacaaaaacaaaaaacaaa
caaacaaacacacatacaaTACACAAgaaacaatttcacaatttgaaaat
atgtaaaaattcttcGACGGTTTTCCCATACTTCATAA Run BLAST on NCBI protein sequence of TCONS_00047837-protein >TCONS_00047837-protein ID=TCONS_00047837-protein|Name=TCONS_00047837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
RRVSHQLKTDIVNQQKELNCNPLNATTKYKVTRKKEARQKTLLQDIRSQM
NHDELRANDLAQAQGASNWLTALPLKNENFVLSKREFFDAIIVRYRWQLK
HLPSHCACGKVYTVEHVLSCAKGGFVYQRHKELRDTIAKLISDVKKDVTI
EPQLEPLTGEDLPTGTITEPGARADISAMGFWTRGQRAFFDVRVFNAYAQ
RYSRKSLKSAFEANEREKKTHYNHRIINVEQGSFTPLIFTTNGGTAREXK
TKKNKKKQQKNKNKKQTNKHTYNTQETISQFENM Run BLAST on NCBI transcript from alignment at scaffold_138:79391..80409+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047837 ID=TCONS_00047837|Name=TCONS_00047837|organism=Clytia hemisphaerica|type=transcript|length=1019bp|location=Sequence derived from alignment at scaffold_138:79391..80409+ (Clytia hemisphaerica)
AAGAAGAGTCAGCCACCAGCTCAAAACTGACATAGTCAACCAACAAAAGG
AGCTCAACTGCAACCCACTAAACGCAACCACCAAATACAAAGTAACACGC
AAGAAAGAAGCAAGACAGAAAACACTGTTACAGGACATCAGATCCCAGAT
GAACCACGACGAGCTTAGAGCAAACGATCTAGCCCAAGCCCAAGGAGCGT
CAAACTGGCTGACAGCATTACCCCTCAAAAATGAGAACTTTGTATTATCG
AAGAGAGAGTTTTTTGACGCAATTATAGTACGTTACAGATGGCAATTGAA
ACACTTGCCTAGTCACTGTGCATGTGGTAAAGTTTACACTGTCGAGCATG
TCTTATCCTGTGCCAAAGGGGGTTTTGTCTACCAGAGGCATAAGGAACTC
AGGGACACTATCGCTAAGCTGATCAGTGATGTCAAGAAAGACGTCACAAT
AGAACCACAACTCGAGCCACTTACAGGAGAGGACCTGCCAACCGGAACAA
TCACNTTGTCTACCAGAGGCATAACGAACTCAGGGACACTATCGCTAAGC
TGATCAGTGATGTCAAGAAAGACGTCACAATAGAGCCACAACTCGAGCCA
CTTACAGGGAAGGACCTGCCAACCGGAACAATCACCGAACCCGGAGCAAG
AGCTGATATAAGCGCGATGGGGTTCTGGACTAGAGGCCAGAGAGCATTTT
TTGATGTCAGGGTATTCAATGCCTACGCTCAACGGTATTCTAGGAAGAGC
CTCAAAAGCGCTTTCGAAGCAAATGAAAGAGAGAAGAAAACCCACTATAA
CCATCGAATCATAAACGTGGAACAAGGATCCTTCACACCCCTAATCTTCA
CAACCAACGGGGGAACCGCTAGAGAAGNaaaaacaaaaaaaaacaaaaaa
aaacaacaaaaaaacaaaaacaaaaaacaaacaaacaaacacacatacaa
TACACAAgaaacaatttcacaatttgaaaatatgtaaaaattcttcGACG
GTTTTCCCATACTTCATAA Coding sequence (CDS) from alignment at scaffold_138:79391..80409+ >TCONS_00047837 ID=TCONS_00047837|Name=TCONS_00047837|organism=Clytia hemisphaerica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_138:79391..80409+ (Clytia hemisphaerica)
AGAAGAGTCAGCCACCAGCTCAAAACTGACATAGTCAACCAACAAAAGGA
GCTCAACTGCAACCCACTAAACGCAACCACCAAATACAAAGTAACACGCA
AGAAAGAAGCAAGACAGAAAACACTGTTACAGGACATCAGATCCCAGATG
AACCACGACGAGCTTAGAGCAAACGATCTAGCCCAAGCCCAAGGAGCGTC
AAACTGGCTGACAGCATTACCCCTCAAAAATGAGAACTTTGTATTATCGA
AGAGAGAGTTTTTTGACGCAATTATAGTACGTTACAGATGGCAATTGAAA
CACTTGCCTAGTCACTGTGCATGTGGTAAAGTTTACACTGTCGAGCATGT
CTTATCCTGTGCCAAAGGGGGTTTTGTCTACCAGAGGCATAAGGAACTCA
GGGACACTATCGCTAAGCTGATCAGTGATGTCAAGAAAGACGTCACAATA
GAACCACAACTCGAGCCACTTACAGGAGAGGACCTGCCAACCGGAACAAT
CACCGAACCCGGAGCAAGAGCTGATATAAGCGCGATGGGGTTCTGGACTA
GAGGCCAGAGAGCATTTTTTGATGTCAGGGTATTCAATGCCTACGCTCAA
CGGTATTCTAGGAAGAGCCTCAAAAGCGCTTTCGAAGCAAATGAAAGAGA
GAAGAAAACCCACTATAACCATCGAATCATAAACGTGGAACAAGGATCCT
TCACACCCCTAATCTTCACAACCAACGGGGGAACCGCTAGAGAAGNaaaa
acaaaaaaaaacaaaaaaaaacaacaaaaaaacaaaaacaaaaaacaaac
aaacaaacacacatacaaTACACAAgaaacaatttcacaatttgaaaata
tgtaaAGAAGAGTCAGCCACCAGCTCAAAACTGACATAGTCAACCAACAA
AAGGAGCTCAACTGCAACCCACTAAACGCAACCACCAAATACAAAGTAAC
ACGCAAGAAAGAAGCAAGACAGAAAACACTGTTACAGGACATCAGATCCC
AGATGAACCACGACGAGCTTAGAGCAAACGATCTAGCCCAAGCCCAAGGA
GCGTCAAACTGGCTGACAGCATTACCCCTCAAAAATGAGAACTTTGTATT
ATCGAAGAGAGAGTTTTTTGACGCAATTATAGTACGTTACAGATGGCAAT
TGAAACACTTGCCTAGTCACTGTGCATGTGGTAAAGTTTACACTGTCGAG
CATGTCTTATCCTGTGCCAAAGGGGGTTTTGTCTACCAGAGGCATAAGGA
ACTCAGGGACACTATCGCTAAGCTGATCAGTGATGTCAAGAAAGACGTCA
CAATAGAACCACAACTCGAGCCACTTACAGGAGAGGACCTGCCAACCGGA
ACAATCACCGAACCCGGAGCAAGAGCTGATATAAGCGCGATGGGGTTCTG
GACTAGAGGCCAGAGAGCATTTTTTGATGTCAGGGTATTCAATGCCTACG
CTCAACGGTATTCTAGGAAGAGCCTCAAAAGCGCTTTCGAAGCAAATGAA
AGAGAGAAGAAAACCCACTATAACCATCGAATCATAAACGTGGAACAAGG
ATCCTTCACACCCCTAATCTTCACAACCAACGGGGGAACCGCTAGAGAAG
Naaaaacaaaaaaaaacaaaaaaaaacaacaaaaaaacaaaaacaaaaaa
caaacaaacaaacacacatacaaTACACAAgaaacaatttcacaatttga
aaatatgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047837-exon-scaffold_138-1491911889:79391..79894 | TCONS_00047837-exon-scaffold_138-1491911889:79391..79894 | Clytia hemisphaerica | exon |
| TCONS_00047837-exon-scaffold_138-1510915933:79391..79894 | TCONS_00047837-exon-scaffold_138-1510915933:79391..79894 | Clytia hemisphaerica | exon |
| TCONS_00047837-exon-scaffold_138-1575043694:79391..79894 | TCONS_00047837-exon-scaffold_138-1575043694:79391..79894 | Clytia hemisphaerica | exon |
| TCONS_00047837-exon-scaffold_138-1491911889:80026..80409 | TCONS_00047837-exon-scaffold_138-1491911889:80026..80409 | Clytia hemisphaerica | exon |
| TCONS_00047837-exon-scaffold_138-1510915933:80026..80409 | TCONS_00047837-exon-scaffold_138-1510915933:80026..80409 | Clytia hemisphaerica | exon |
| TCONS_00047837-exon-scaffold_138-1575043694:80026..80409 | TCONS_00047837-exon-scaffold_138-1575043694:80026..80409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_138 | supercontig | scaffold_138:79391..80409 + |
Blast
The following BLAST results are available for this feature:
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