TCONS_00047855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047855
Unique NameTCONS_00047855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length869

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047855 ID=TCONS_00047855|Name=TCONS_00047855|organism=Clytia hemisphaerica|type=transcript|length=869bp
GTAGGCCGGTTGGCAGATGTGACGAGCGGCTTTGAACccagagaaaaata
aaaatacaaactttaaagaaaaatccCTTTACTCCTTTGTTTCAGATCAT
CTGTGAAAAATATTGCATAATTTTACACCATAAAACCTTATTATTAAGTT
TCCTGTTTCCGCACTTAGATTCTTGTCCCCGTTCCGGAATCTTTCACTAT
TTTCCCGGGCTCACCagccaaaaaataaaagacaCCAAGCTATCAAATCA
GTATGAAATTAGTTAAAAGGCTATTTTTTCGCTTAACCGGATTTAGCCGT
TTCCAATTATGTTATACTTACCGGGTTTGAGTTCATTCAAGTCTTCAAGA
GTTACTTCCATTATATCTTTATAGCTTGATGTTAAATCACTAGTTTGTGT
TGAGATCTGAAATGAAGtcaataaaatcttttaaatgtaAATTTAATCTG
ATATGATATTCATTTAAAACAGTGTTCCTTAACTGACATCACCTGCCTGG
TGCTTTGGCCTCGGCGCTGACAGCAGACATAATTTTATAACATGTAATGG
CATGTAATAAACCTTTTCAATAATGCATTGTACTGCAAGAATTCCATATT
TGTTCCAGTAGTCTACTAACCGCCCACCAACTGAAATTATGAACATAACT
GATAATGTGCTCACATCATCATGTACTCATCATGTGGCCACCAATGGCAA
TTAAGGGGCGACATCCATATTCAACCCTAccacgcgtaacgggaaaagac
cgaTAGTTTTCAAACATACCTACACACCATCTTAACAGTCTTTGCAAAAA
AGACCAAAATCCAACACTTTACCCACCACTGTAAACATGTTTCATTCTTT
TTTCTCAACTCTCATAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_138:82739..83607

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047855 ID=TCONS_00047855|Name=TCONS_00047855|organism=Clytia hemisphaerica|type=transcript|length=869bp|location=Sequence derived from alignment at scaffold_138:82739..83607 (Clytia hemisphaerica)
ATTTATGAGAGTTGAGAAAAAAGAATGAAACATGTTTACAGTGGTGGGTA
AAGTGTTGGATTTTGGTCTTTTTTGCAAAGACTGTTAAGATGGTGTGTAG
GTATGTTTGAAAACTAtcggtcttttcccgttacgcgtggTAGGGTTGAA
TATGGATGTCGCCCCTTAATTGCCATTGGTGGCCACATGATGAGTACATG
ATGATGTGAGCACATTATCAGTTATGTTCATAATTTCAGTTGGTGGGCGG
TTAGTAGACTACTGGAACAAATATGGAATTCTTGCAGTACAATGCATTAT
TGAAAAGGTTTATTACATGCCATTACATGTTATAAAATTATGTCTGCTGT
CAGCGCCGAGGCCAAAGCACCAGGCAGGTGATGTCAGTTAAGGAACACTG
TTTTAAATGAATATCATATCAGATTAAATTtacatttaaaagattttatt
gaCTTCATTTCAGATCTCAACACAAACTAGTGATTTAACATCAAGCTATA
AAGATATAATGGAAGTAACTCTTGAAGACTTGAATGAACTCAAACCCGGT
AAGTATAACATAATTGGAAACGGCTAAATCCGGTTAAGCGAAAAAATAGC
CTTTTAACTAATTTCATACTGATTTGATAGCTTGGtgtcttttatttttt
ggctGGTGAGCCCGGGAAAATAGTGAAAGATTCCGGAACGGGGACAAGAA
TCTAAGTGCGGAAACAGGAAACTTAATAATAAGGTTTTATGGTGTAAAAT
TATGCAATATTTTTCACAGATGATCTGAAACAAAGGAGTAAAGggatttt
tctttaaagtttgtatttttatttttctctggGTTCAAAGCCGCTCGTCA
CATCTGCCAACCGGCCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030463XLOC_030463Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047855-exon-scaffold_138-1491911889:82739..83607TCONS_00047855-exon-scaffold_138-1491911889:82739..83607Clytia hemisphaericaexon
TCONS_00047855-exon-scaffold_138-1510915933:82739..83607TCONS_00047855-exon-scaffold_138-1510915933:82739..83607Clytia hemisphaericaexon
TCONS_00047855-exon-scaffold_138-1575043694:82739..83607TCONS_00047855-exon-scaffold_138-1575043694:82739..83607Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_138supercontigscaffold_138:82739..83607 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.215017	0	0.18259	0.297726	0.434943	0.630112	0.552876	1.74688	0.815357	0.785517	0.925823	1.074	1.25126	2.26474	0.0610468	0.163781	0.0807061	0.124082	0	0.11959	0.0519726	0.152102	0	0.112068	1.90454	3.39952	0.0737076	0	0.0596629	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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