TCONS_00047842 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00047842
Unique Name	TCONS_00047842
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1676

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_138:97902..107597-

transcript sequence

>TCONS_00047842 ID=TCONS_00047842|Name=TCONS_00047842|organism=Clytia hemisphaerica|type=transcript|length=1676bp
aaagaaaacaatgaaaagaagaaagaaaacaatgaaaagaagaaagaaaa
agacgCAAAGAAGAAAGAGAAAGAACAACAAAAGCTGGAAAAGGAAAAGG
AGAAGATTGATAAGGAAAAGGAGAAGATTGAAAAGGAAGAACTGATGTGG
AGGAAAGAGGAAGCTTTTATGCAAAATTCTGTACATTTTATACGCTCTCT
CAGCGATGGAGAAGGCTGTCATGATGCTGATCGCCATGATGAAGTTGATG
ATGACAGTATGCCAGAAGTTGACCACCATGATCATGTTGAAAATAATGAT
GGCAGCGACAATCCAATCGAATCAGTAAGTTCTGAAAGTGATGATGATAA
TTTGAAGGAAGTACACAGCATGCCATTTGATAGTCCACATAATAAATCTA
CTGCTAAATTGCCAAAACCAAAAACACCGTCCACGCCATTGGATAAGCAG
CACAAACCTGCAAAATCATCACTTTCCACACCATTGGATAACCAGTGCAA
ACCTGCAAAATCCTCACCATCCACACCATTGGATAAGCAACGCATACCTG
CAAAATCGTCACCATCCACACCATTGGGTAAGCAGCACAAACCTGCAAAA
TCATCACCATCCACACCATTGCATAAGCAGCACAAACCTGCAAAATCGTC
ACCGTCCACACCATTGGATAAGCAGCGCAATCCTGCAAAATCGTCACCGT
CCACACCATTAGATAAGCAGCACAAACCTGCAAAATCGTCACCGTCCACA
CAAGTGGATGGTAAGGGCAAACCTGCTAAAACTGATTTCCCAAGTCACAA
TGAATCTCCGAAGTCTTCCGCATCAGAAATATTGAGTCCAAGAAAGAGAT
TAATTGCCAGCCAAATGAAAGGTGCTGCAAAAAGCCCTTATTTTCAAAAG
CCAAAGAGCTGTTACTTTTGCACACTCAAAGAAAATAAGGCCAAAGAAAC
GAATGCCAAAATTGCTGAGTTGGAAGATGAAATCGCTCGCCTCAATAGAG
TCCTTGCAGGTGGAAACTATATCGAATCTCTTGGACGACCAAAGTCAGGC
CTGATTCCAAGCAAAATTGCCAAGAAATATCAGCTTGAGCAACTTGCCCC
TGGCTTTGATGTCTATGTGGACCAAGAGGAATTTCGAACAGCAGCAACTA
AAAGTAACGGTACCGGAGCAGTTTTGTTTTTGCTTAGCTGTTTTTACACA
CACAGCGAGTTGCTGGAGATGAATTTAACAGGGGAGAATGGGAAGAAACC
AGTGAACAAAGAAATACTAAAAGCAATCATATGCTCTGGACAAGGGGGAT
TCCAAAGCAAAACTTGCGGTGGCGTTGCGCAACAAAATAGAGCAAATAAG
AACCAGGCATCGCAAAGCTCCGAACCAAGTTGAGGGTGAAAATGCATTGA
CAAACAACAAATAGATTCATGAGGAGCAGTCAAGAAATGTGATTTGCATA
TAAATGTGATGTATGTGGAAATTTGTATCTGGAAAAACattagatttttc
tgatttttaaagTATCGtataaaactttgaataaaTGCCCCTTTTTTTTA
AAGGCTCGCCCTCTAGGGGTAAAACAAAGAGTAGATTTTCCCTGAAAATT
CAATATtagttttcaaataatttattATAGCCCCtctaaaaatttaaatg
aaCTCCTTGACGTAATACGATATATt

Run BLAST on NCBI

transcript from alignment at scaffold_138:97902..107597-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00047842 ID=TCONS_00047842|Name=TCONS_00047842|organism=Clytia hemisphaerica|type=transcript|length=9696bp|location=Sequence derived from alignment at scaffold_138:97902..107597- (Clytia hemisphaerica)
AAAGAAAACAATGAAAAGAAGAAAGAAAACAATGAAAAGAAGAAAGAAAA
AGACGCAAAGAAGAAAGAGAAAGAACAACAAAAGCTGGAAAAGGAAAAGG
AGAAGATTGATAAGGAAAAGGAGAAGATTGAAAAGGAAGAACTGATGTGG
AGGAAAGAGGAAGCTTTTATGCAAAATTCTGTACATTTTATACGCTCTCT
CAGCGATGGAGAAGGCTGTCATGATGCTGATCGCCATGATGAAGTTGATG
ATGACAGTATGCCAGAAGTTGACCACCATGATCATGTTGAAAATAATGAT
GGCAGCGACAATCCAATCGAATCAGTAAGTTCTGAAAGTGATGATGATAA
TTTGAAGGAAGTACACAGCATGCCATTTGATAGTCCACATAATAAATCTA
CTGCTAAATTGCCAAAACCAAAAACACCGTCCACGCCATTGGATAAGCAG
CACAAACCTGCAAAATCATCACTTTCCACACCATTGGATAACCAGTGCAA
ACCTGCAAAATCCTCACCATCCACACCATTGGATAAGCAACGCATACCTG
CAAAATCGTCACCATCCACACCATTGGGTAAGCAGCACAAACCTGCAAAA
TCATCACCATCCACACCATTGCATAAGCAGCACAAACCTGCAAAATCGTC
ACCGTCCACACCATTGGATAAGCAGCGCAATCCTGCAAAATCGTCACCGT
CCACACCATTAGATAAGCAGCACAAACCTGCAAAATCGTCACCGTCCACA
CAAGTGGATGGTAAGGGCAAACCTGCTAAAACTGATTTCCCAAGTCACAA
TGAATCTCCGAAGTCTTCCGCATCAGAAATATTGAGTCCAAGAAAGAGAT
TAATTGCCAGCCAAATGAAAGGTGCTGCAAAAAGCCCTTATTTTCAAAAG
CCAAAGAGCTGTTACTTTTGCACACTCAAAGAAAATAAGGCCAAAGAAAC
GAATGCCAAAATTGCTGAGTTGGAAGATGAAATCGCTCGCCTCAATAGAG
TCCTTGCAGGTGGAAACTATATCGGTATGTATACGCAAACTATGTTTCTT
GTTTAAGCCTTCTTTTTGGAAAATACTCTTTTGTGCCTTTTTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATA
CTATTGCTTAAAATTTTATAAAGTGTTTTGGTCTGCATTATTATGGAATG
TTCTTACATTTCCCGCCTTTTATAAAAACGGTTCACGATTGGTTGGTTTA
CTGGACCACAATGCAACGAAGGATTAGACCTTAGACCCTTGAAGAAAGCT
GAGTCGGGATTCTTGCAGCTTTTACAGCGTTTGAATGCAGGGTTGACCTA
AAGGGAGATTTTTATATAGTCGGAATTTCTCTGGAAAAATATTATCATGT
CGTTCGTAGTGATCAACTGGACCGACGGTGGTGTCAGTTACGAGTCGAGA
GGTAAATTGACTGCTGAAGATGGTTTCCTCACAGGGAAATCTGTTTCCAA
ACCCCAAAAGGACAAAGATGATTGGATTGGCATCATTGATAGTGTTTGGA
GTAAGTATATAGTCTAATTTGATTAATTATTGACACAAAGTATAGCTGGT
CTGTTCCAGTTATAGTTCATAAGGCTTCCTCTAATGATTGGATTGTTTAT
TTAAAGTGTCCATAGACGTACCGTGAGGTCTGGTAACTTTGCATCAATGG
AGACTTTGACATGCATAGCCCTCAAATGATTGACCTGGCTGGTTATTAAA
ATACACAGTTAAATTAACAAAAATAGTAGAATGGAGCTGCAAGCATAGCT
GTGCAGTTCATTTGTTTTGAAATTTTGCTTCTTGGGGATTGATGGCTATG
CAAAGTTTCCCTCGACTGATNAATGGAGCTGCAAGCATAGCTGTGCAGTT
CATTTGTTTTGAAATTTTGCTTCTTGGGGATTGATGGCTATGCAAAGTTT
CCCTCGACTGATGCAAGTTACCCGACTTCATGGTATAATTGAAAGTAAGG
GGTCACTCACATATCAATTCTTCCCACAACTAACGTCGAATTGTCGTTAA
TTAAAAAATATCCCACCTCTTAACGTCAAAGTTAAAAATTGTCAAAAATT
GATGTAACTCTACATTTTCCCCTTCATTATTGTTTTGTAGGCCATCTTTA
ATTTCGCTACGGCTTCGCTTAGTTTACGTTTATAAAATAACAGATACTCA
GTGTTGCAAAACTTTTCCGTCTGTAGACGGAAATCTATCCAGCTAAAATT
TAGAATTTGACTTTCCGACTCCAAACAGTANNNNNNNNNNNNNNNNNNNN
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TTGGTTGGAGGATATAACATATATGCAAACTTTGATATAATTTTAGAATC
TCTTGGACGACCAAAGTCAGGCCTGATTCCAAGCAAAATTGCCAAGAAAT
ATCAGGTGAGATTTTTTTGTCTTGTAAAATCAACAAATAACAAAATTTAC
TTTAAATTTGAAATTTCGCAAAATCTTTTGGGTTTAATTTTGTGCTTCAG
CAGTTTGAAAAATTTGGACGCTTTAATTTTGCAAATGAGTCTGACTGCCT
GTGACTGCTGAGAATATCAATTTTTGGGCATAGAGAGTTTTGACTCTTCT
TAATCCAAAATGCTTTGTCAAAAAATTTTGTGGAGAATTAATAGAGTCAG
CAAATATCTCGCACATCTTCGTAAGTTTTAATTTGACGCATAATAGGCAA
ATAATAGGTTTCTTTCAGTTTCTTTAAGAGAGTTATTATTTATTTTAAGC
TTGAGCAACTTGCCCCTGGCTTTGATGTCTATGTGGACCAAGAGGAATTT
CGAACAGCAGCAACTAAAAGTAACGGTACCGGAGCAGTTTTGTTTTTGCT
TAGCTGTTTTTACACACACAGCGAGTTGCTGGAGATGAATTTAACAGGGG
AGAATGGGAAGAAACCAGTGAACAAAGAAATACTAAAAGCAATGTATGGT
AAGTTTACGATCATTATATAATAATAAAAAATGAGATTCTATATATCCTC
TTGGTTTCATGAGAACTACATGCAAGACCTTAATATGATCATTTCTTTTC
CAATGTAGCCATTCCTGTAACGCAGTTTTTCAACAAATGCCGGATTGAAA
GTTTTTCTGCTAAAATTTCGAAAAAGTATCACTCAAAACAAAGAAATCCC
TAGATTCAATCCAAAAATACAACGCATTTTTTAAGGCTTCACTTTTTCTT
ACCTCAGAAAGGTTAAAGATTCTGCTCTAGCCCTTCCGGCTTACTCTCGG
GTACCTACTAGACAGGGAGTTGGAATAAGCGGGGTGGGTGGAAAAATTAT
CAAAACTTAATAAGCGGGGGGTTGGAATAAAAATGTCCTGGGTGGAAAAT
TTTTTGAAAAGCAGCATAATACAGAAGAATCAGGGCAAAAAAGAAACTTC
AAAAAATACTTTTCCGAAAAATTAATAAGTGTGGGGGGGGGAGGGTTGGA
ATGAGAATGTCCTGGGTGGAAAATTTTCGAAAAATTAATTATCAGGGGGA
CGCTTATTAGGTACCCGAGAGTACACTCGATGATTGTAAGCATACATTTT
TGAGATGACATCCTTGTTACTGCATACATAATAGCCCATATTATCTCTGT
AAATCTCAAAATAATTGAAAAACCCATGTTTCCTTTTTGCTTTCTAGCAT
ATGCTCTGGACAAGGGGGATTCCAAAGCAAAACTTGCGGTGGCGTTGCGC
AACAAAATAGAGCAAATAAGAACCAGGCATCGCAAAGCTCCGAACCAAGT
TGAGGGTGAAAATGCATTGACAAACAACAAATAGATTCATGAGGAGCAGT
CAAGAAATGTGATTTGCATATAAATGTGATGTATGTGGAAATTTGTATCT
GGAAAAACATTAGATTTTTCTGATTTTTAAAGTATCGTATAAAACTTTGA
ATAAATGCCCCTTTTTTTTAAAGGCTCGCCCTCTAGGGGTAAAACAAAGA
GTAGATTTTCCCTGAAAATTCAATATTAGTTTTCAAATAATTTATTATAG
CCCCTCTAAAAATTTAAATGAACTCCTTGACGTAATACGATATATT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030450	XLOC_030450	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00047842-exon-scaffold_138-1575043694:106574..107597	TCONS_00047842-exon-scaffold_138-1575043694:106574..107597	Clytia hemisphaerica	exon
TCONS_00047842-exon-scaffold_138-1575043694:99543..99601	TCONS_00047842-exon-scaffold_138-1575043694:99543..99601	Clytia hemisphaerica	exon
TCONS_00047842-exon-scaffold_138-1575043694:99005..99198	TCONS_00047842-exon-scaffold_138-1575043694:99005..99198	Clytia hemisphaerica	exon
TCONS_00047842-exon-scaffold_138-1575043694:97902..98300	TCONS_00047842-exon-scaffold_138-1575043694:97902..98300	Clytia hemisphaerica	exon
TCONS_00047842-exon-scaffold_138-1510915933:106574..107597	TCONS_00047842-exon-scaffold_138-1510915933:106574..107597	Clytia hemisphaerica	exon
TCONS_00047842-exon-scaffold_138-1510915933:99543..99601	TCONS_00047842-exon-scaffold_138-1510915933:99543..99601	Clytia hemisphaerica	exon
TCONS_00047842-exon-scaffold_138-1510915933:99005..99198	TCONS_00047842-exon-scaffold_138-1510915933:99005..99198	Clytia hemisphaerica	exon
TCONS_00047842-exon-scaffold_138-1510915933:97902..98300	TCONS_00047842-exon-scaffold_138-1510915933:97902..98300	Clytia hemisphaerica	exon
TCONS_00047842-exon-scaffold_138-1491911889:106574..107597	TCONS_00047842-exon-scaffold_138-1491911889:106574..107597	Clytia hemisphaerica	exon
TCONS_00047842-exon-scaffold_138-1491911889:99543..99601	TCONS_00047842-exon-scaffold_138-1491911889:99543..99601	Clytia hemisphaerica	exon
TCONS_00047842-exon-scaffold_138-1491911889:99005..99198	TCONS_00047842-exon-scaffold_138-1491911889:99005..99198	Clytia hemisphaerica	exon
TCONS_00047842-exon-scaffold_138-1491911889:97902..98300	TCONS_00047842-exon-scaffold_138-1491911889:97902..98300	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_138	supercontig	scaffold_138:97902..107597 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.403	3.60617	1.17583	0	0	1.10606	9.542e-06	0	0.25052	0	0	1.2573	0	0	0	0.563478	0	0	0	0.00478687	0	0	0	0.889817	0.583719	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00047842 vs. Swiss-Prot (Human)

BLAST of TCONS_00047842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00047842 (transcript) - C. hemisphaerica