TCONS_00047842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047842
Unique NameTCONS_00047842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047842 ID=TCONS_00047842|Name=TCONS_00047842|organism=Clytia hemisphaerica|type=transcript|length=1676bp
aaagaaaacaatgaaaagaagaaagaaaacaatgaaaagaagaaagaaaa
agacgCAAAGAAGAAAGAGAAAGAACAACAAAAGCTGGAAAAGGAAAAGG
AGAAGATTGATAAGGAAAAGGAGAAGATTGAAAAGGAAGAACTGATGTGG
AGGAAAGAGGAAGCTTTTATGCAAAATTCTGTACATTTTATACGCTCTCT
CAGCGATGGAGAAGGCTGTCATGATGCTGATCGCCATGATGAAGTTGATG
ATGACAGTATGCCAGAAGTTGACCACCATGATCATGTTGAAAATAATGAT
GGCAGCGACAATCCAATCGAATCAGTAAGTTCTGAAAGTGATGATGATAA
TTTGAAGGAAGTACACAGCATGCCATTTGATAGTCCACATAATAAATCTA
CTGCTAAATTGCCAAAACCAAAAACACCGTCCACGCCATTGGATAAGCAG
CACAAACCTGCAAAATCATCACTTTCCACACCATTGGATAACCAGTGCAA
ACCTGCAAAATCCTCACCATCCACACCATTGGATAAGCAACGCATACCTG
CAAAATCGTCACCATCCACACCATTGGGTAAGCAGCACAAACCTGCAAAA
TCATCACCATCCACACCATTGCATAAGCAGCACAAACCTGCAAAATCGTC
ACCGTCCACACCATTGGATAAGCAGCGCAATCCTGCAAAATCGTCACCGT
CCACACCATTAGATAAGCAGCACAAACCTGCAAAATCGTCACCGTCCACA
CAAGTGGATGGTAAGGGCAAACCTGCTAAAACTGATTTCCCAAGTCACAA
TGAATCTCCGAAGTCTTCCGCATCAGAAATATTGAGTCCAAGAAAGAGAT
TAATTGCCAGCCAAATGAAAGGTGCTGCAAAAAGCCCTTATTTTCAAAAG
CCAAAGAGCTGTTACTTTTGCACACTCAAAGAAAATAAGGCCAAAGAAAC
GAATGCCAAAATTGCTGAGTTGGAAGATGAAATCGCTCGCCTCAATAGAG
TCCTTGCAGGTGGAAACTATATCGAATCTCTTGGACGACCAAAGTCAGGC
CTGATTCCAAGCAAAATTGCCAAGAAATATCAGCTTGAGCAACTTGCCCC
TGGCTTTGATGTCTATGTGGACCAAGAGGAATTTCGAACAGCAGCAACTA
AAAGTAACGGTACCGGAGCAGTTTTGTTTTTGCTTAGCTGTTTTTACACA
CACAGCGAGTTGCTGGAGATGAATTTAACAGGGGAGAATGGGAAGAAACC
AGTGAACAAAGAAATACTAAAAGCAATCATATGCTCTGGACAAGGGGGAT
TCCAAAGCAAAACTTGCGGTGGCGTTGCGCAACAAAATAGAGCAAATAAG
AACCAGGCATCGCAAAGCTCCGAACCAAGTTGAGGGTGAAAATGCATTGA
CAAACAACAAATAGATTCATGAGGAGCAGTCAAGAAATGTGATTTGCATA
TAAATGTGATGTATGTGGAAATTTGTATCTGGAAAAACattagatttttc
tgatttttaaagTATCGtataaaactttgaataaaTGCCCCTTTTTTTTA
AAGGCTCGCCCTCTAGGGGTAAAACAAAGAGTAGATTTTCCCTGAAAATT
CAATATtagttttcaaataatttattATAGCCCCtctaaaaatttaaatg
aaCTCCTTGACGTAATACGATATATt
Run BLAST on NCBI

transcript from alignment at scaffold_138:97902..107597-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047842 ID=TCONS_00047842|Name=TCONS_00047842|organism=Clytia hemisphaerica|type=transcript|length=9696bp|location=Sequence derived from alignment at scaffold_138:97902..107597- (Clytia hemisphaerica)
AAAGAAAACAATGAAAAGAAGAAAGAAAACAATGAAAAGAAGAAAGAAAA
AGACGCAAAGAAGAAAGAGAAAGAACAACAAAAGCTGGAAAAGGAAAAGG
AGAAGATTGATAAGGAAAAGGAGAAGATTGAAAAGGAAGAACTGATGTGG
AGGAAAGAGGAAGCTTTTATGCAAAATTCTGTACATTTTATACGCTCTCT
CAGCGATGGAGAAGGCTGTCATGATGCTGATCGCCATGATGAAGTTGATG
ATGACAGTATGCCAGAAGTTGACCACCATGATCATGTTGAAAATAATGAT
GGCAGCGACAATCCAATCGAATCAGTAAGTTCTGAAAGTGATGATGATAA
TTTGAAGGAAGTACACAGCATGCCATTTGATAGTCCACATAATAAATCTA
CTGCTAAATTGCCAAAACCAAAAACACCGTCCACGCCATTGGATAAGCAG
CACAAACCTGCAAAATCATCACTTTCCACACCATTGGATAACCAGTGCAA
ACCTGCAAAATCCTCACCATCCACACCATTGGATAAGCAACGCATACCTG
CAAAATCGTCACCATCCACACCATTGGGTAAGCAGCACAAACCTGCAAAA
TCATCACCATCCACACCATTGCATAAGCAGCACAAACCTGCAAAATCGTC
ACCGTCCACACCATTGGATAAGCAGCGCAATCCTGCAAAATCGTCACCGT
CCACACCATTAGATAAGCAGCACAAACCTGCAAAATCGTCACCGTCCACA
CAAGTGGATGGTAAGGGCAAACCTGCTAAAACTGATTTCCCAAGTCACAA
TGAATCTCCGAAGTCTTCCGCATCAGAAATATTGAGTCCAAGAAAGAGAT
TAATTGCCAGCCAAATGAAAGGTGCTGCAAAAAGCCCTTATTTTCAAAAG
CCAAAGAGCTGTTACTTTTGCACACTCAAAGAAAATAAGGCCAAAGAAAC
GAATGCCAAAATTGCTGAGTTGGAAGATGAAATCGCTCGCCTCAATAGAG
TCCTTGCAGGTGGAAACTATATCGGTATGTATACGCAAACTATGTTTCTT
GTTTAAGCCTTCTTTTTGGAAAATACTCTTTTGTGCCTTTTTTNNNNNNN
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CTATTGCTTAAAATTTTATAAAGTGTTTTGGTCTGCATTATTATGGAATG
TTCTTACATTTCCCGCCTTTTATAAAAACGGTTCACGATTGGTTGGTTTA
CTGGACCACAATGCAACGAAGGATTAGACCTTAGACCCTTGAAGAAAGCT
GAGTCGGGATTCTTGCAGCTTTTACAGCGTTTGAATGCAGGGTTGACCTA
AAGGGAGATTTTTATATAGTCGGAATTTCTCTGGAAAAATATTATCATGT
CGTTCGTAGTGATCAACTGGACCGACGGTGGTGTCAGTTACGAGTCGAGA
GGTAAATTGACTGCTGAAGATGGTTTCCTCACAGGGAAATCTGTTTCCAA
ACCCCAAAAGGACAAAGATGATTGGATTGGCATCATTGATAGTGTTTGGA
GTAAGTATATAGTCTAATTTGATTAATTATTGACACAAAGTATAGCTGGT
CTGTTCCAGTTATAGTTCATAAGGCTTCCTCTAATGATTGGATTGTTTAT
TTAAAGTGTCCATAGACGTACCGTGAGGTCTGGTAACTTTGCATCAATGG
AGACTTTGACATGCATAGCCCTCAAATGATTGACCTGGCTGGTTATTAAA
ATACACAGTTAAATTAACAAAAATAGTAGAATGGAGCTGCAAGCATAGCT
GTGCAGTTCATTTGTTTTGAAATTTTGCTTCTTGGGGATTGATGGCTATG
CAAAGTTTCCCTCGACTGATNAATGGAGCTGCAAGCATAGCTGTGCAGTT
CATTTGTTTTGAAATTTTGCTTCTTGGGGATTGATGGCTATGCAAAGTTT
CCCTCGACTGATGCAAGTTACCCGACTTCATGGTATAATTGAAAGTAAGG
GGTCACTCACATATCAATTCTTCCCACAACTAACGTCGAATTGTCGTTAA
TTAAAAAATATCCCACCTCTTAACGTCAAAGTTAAAAATTGTCAAAAATT
GATGTAACTCTACATTTTCCCCTTCATTATTGTTTTGTAGGCCATCTTTA
ATTTCGCTACGGCTTCGCTTAGTTTACGTTTATAAAATAACAGATACTCA
GTGTTGCAAAACTTTTCCGTCTGTAGACGGAAATCTATCCAGCTAAAATT
TAGAATTTGACTTTCCGACTCCAAACAGTANNNNNNNNNNNNNNNNNNNN
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TTGGTTGGAGGATATAACATATATGCAAACTTTGATATAATTTTAGAATC
TCTTGGACGACCAAAGTCAGGCCTGATTCCAAGCAAAATTGCCAAGAAAT
ATCAGGTGAGATTTTTTTGTCTTGTAAAATCAACAAATAACAAAATTTAC
TTTAAATTTGAAATTTCGCAAAATCTTTTGGGTTTAATTTTGTGCTTCAG
CAGTTTGAAAAATTTGGACGCTTTAATTTTGCAAATGAGTCTGACTGCCT
GTGACTGCTGAGAATATCAATTTTTGGGCATAGAGAGTTTTGACTCTTCT
TAATCCAAAATGCTTTGTCAAAAAATTTTGTGGAGAATTAATAGAGTCAG
CAAATATCTCGCACATCTTCGTAAGTTTTAATTTGACGCATAATAGGCAA
ATAATAGGTTTCTTTCAGTTTCTTTAAGAGAGTTATTATTTATTTTAAGC
TTGAGCAACTTGCCCCTGGCTTTGATGTCTATGTGGACCAAGAGGAATTT
CGAACAGCAGCAACTAAAAGTAACGGTACCGGAGCAGTTTTGTTTTTGCT
TAGCTGTTTTTACACACACAGCGAGTTGCTGGAGATGAATTTAACAGGGG
AGAATGGGAAGAAACCAGTGAACAAAGAAATACTAAAAGCAATGTATGGT
AAGTTTACGATCATTATATAATAATAAAAAATGAGATTCTATATATCCTC
TTGGTTTCATGAGAACTACATGCAAGACCTTAATATGATCATTTCTTTTC
CAATGTAGCCATTCCTGTAACGCAGTTTTTCAACAAATGCCGGATTGAAA
GTTTTTCTGCTAAAATTTCGAAAAAGTATCACTCAAAACAAAGAAATCCC
TAGATTCAATCCAAAAATACAACGCATTTTTTAAGGCTTCACTTTTTCTT
ACCTCAGAAAGGTTAAAGATTCTGCTCTAGCCCTTCCGGCTTACTCTCGG
GTACCTACTAGACAGGGAGTTGGAATAAGCGGGGTGGGTGGAAAAATTAT
CAAAACTTAATAAGCGGGGGGTTGGAATAAAAATGTCCTGGGTGGAAAAT
TTTTTGAAAAGCAGCATAATACAGAAGAATCAGGGCAAAAAAGAAACTTC
AAAAAATACTTTTCCGAAAAATTAATAAGTGTGGGGGGGGGAGGGTTGGA
ATGAGAATGTCCTGGGTGGAAAATTTTCGAAAAATTAATTATCAGGGGGA
CGCTTATTAGGTACCCGAGAGTACACTCGATGATTGTAAGCATACATTTT
TGAGATGACATCCTTGTTACTGCATACATAATAGCCCATATTATCTCTGT
AAATCTCAAAATAATTGAAAAACCCATGTTTCCTTTTTGCTTTCTAGCAT
ATGCTCTGGACAAGGGGGATTCCAAAGCAAAACTTGCGGTGGCGTTGCGC
AACAAAATAGAGCAAATAAGAACCAGGCATCGCAAAGCTCCGAACCAAGT
TGAGGGTGAAAATGCATTGACAAACAACAAATAGATTCATGAGGAGCAGT
CAAGAAATGTGATTTGCATATAAATGTGATGTATGTGGAAATTTGTATCT
GGAAAAACATTAGATTTTTCTGATTTTTAAAGTATCGTATAAAACTTTGA
ATAAATGCCCCTTTTTTTTAAAGGCTCGCCCTCTAGGGGTAAAACAAAGA
GTAGATTTTCCCTGAAAATTCAATATTAGTTTTCAAATAATTTATTATAG
CCCCTCTAAAAATTTAAATGAACTCCTTGACGTAATACGATATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030450XLOC_030450Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047842-exon-scaffold_138-1575043694:106574..107597TCONS_00047842-exon-scaffold_138-1575043694:106574..107597Clytia hemisphaericaexon
TCONS_00047842-exon-scaffold_138-1575043694:99543..99601TCONS_00047842-exon-scaffold_138-1575043694:99543..99601Clytia hemisphaericaexon
TCONS_00047842-exon-scaffold_138-1575043694:99005..99198TCONS_00047842-exon-scaffold_138-1575043694:99005..99198Clytia hemisphaericaexon
TCONS_00047842-exon-scaffold_138-1575043694:97902..98300TCONS_00047842-exon-scaffold_138-1575043694:97902..98300Clytia hemisphaericaexon
TCONS_00047842-exon-scaffold_138-1510915933:106574..107597TCONS_00047842-exon-scaffold_138-1510915933:106574..107597Clytia hemisphaericaexon
TCONS_00047842-exon-scaffold_138-1510915933:99543..99601TCONS_00047842-exon-scaffold_138-1510915933:99543..99601Clytia hemisphaericaexon
TCONS_00047842-exon-scaffold_138-1510915933:99005..99198TCONS_00047842-exon-scaffold_138-1510915933:99005..99198Clytia hemisphaericaexon
TCONS_00047842-exon-scaffold_138-1510915933:97902..98300TCONS_00047842-exon-scaffold_138-1510915933:97902..98300Clytia hemisphaericaexon
TCONS_00047842-exon-scaffold_138-1491911889:106574..107597TCONS_00047842-exon-scaffold_138-1491911889:106574..107597Clytia hemisphaericaexon
TCONS_00047842-exon-scaffold_138-1491911889:99543..99601TCONS_00047842-exon-scaffold_138-1491911889:99543..99601Clytia hemisphaericaexon
TCONS_00047842-exon-scaffold_138-1491911889:99005..99198TCONS_00047842-exon-scaffold_138-1491911889:99005..99198Clytia hemisphaericaexon
TCONS_00047842-exon-scaffold_138-1491911889:97902..98300TCONS_00047842-exon-scaffold_138-1491911889:97902..98300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_138supercontigscaffold_138:97902..107597 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.403	3.60617	1.17583	0	0	1.10606	9.542e-06	0	0.25052	0	0	1.2573	0	0	0	0.563478	0	0	0	0.00478687	0	0	0	0.889817	0.583719	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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