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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047856 ID=TCONS_00047856|Name=TCONS_00047856|organism=Clytia hemisphaerica|type=transcript|length=1032bp
CGATTGGTTGGTTTACTGGACCACAATGCAACGAAGGATTAGACCTTAGA
CCCTTGAAGAAAGCTGAGTCGGGATTCTTGCAGCTTTTACAGCGTTTGAA
TGCAGGGTTGACCTAAAGGGAGATTTTTATATAGTCGGAATTTCTCTGGA
AAAATATTATCATGTCGTTCGTAGTGATCAACTGGACCGACGGTGGTGTC
AGTTACGAGTCGAGAGGTAAATTGACTGCTGAAGATGGTTTCCTCACAGG
GAAATCTGTTTCCAAACCCCAAAAGGACAAAGATGATTGGATTGGCATCA
TTGATAGTGTTTGGAGTAAGTATATAGTCTAATTTGATTAATTATTGACA
CAAAGTATAGCTGGTCTGTTCCAGTTATAGTTCATAAGGCTTCCTCTAAT
GATTGGATTGTTTATTTAAAGTGTCCATAGACGTACCGTGAGGTCTGGTA
ACTTTGCATCAATGGAGACTTtgacatgcatagccctcaaatgattGACC
TGGCTGGTTATTAAAATACACAgttaaattaacaaaaatagtAGAATGGA
GCTGCAAGCATAGCTGTgcagttcatttgttttgaaattttgcttctTGG
GGATTGATGGCTATGCAAAGTTTCCCTCGACTGATNAATGGAGCTGCAAG
CATAGCTGTgcagttcatttgttttgaaattttgcttctTGGGGATTGAT
GGCTATGCAAAGTTTCCCtcgactgatgcaagttacccgacttcatggTA
TAATTGAAagtaaggggtcactcacatatcaatTCTTCCCACAACTAACG
TCGAATTGtcgttaattaaaaaatatcccacctcttaacgtcaaagttaa
aaattgtcaaaaattgatGTAACTCTACATTTTCCCCTTCATTATTGTTT
TGTAggccatctttaatttcgctACGGCTTCGCTTAGTTTACGTTTATAA
AATAACAGATACTCAGTGTTGCAAAACTTTTCCGTCTGTAGACGGAAATC
TATCCAGCTAAAATTTAGAATTTGACTTTCCG Run BLAST on NCBI transcript from alignment at scaffold_138:105281..106312 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047856 ID=TCONS_00047856|Name=TCONS_00047856|organism=Clytia hemisphaerica|type=transcript|length=1032bp|location=Sequence derived from alignment at scaffold_138:105281..106312 (Clytia hemisphaerica)
CGGAAAGTCAAATTCTAAATTTTAGCTGGATAGATTTCCGTCTACAGACG
GAAAAGTTTTGCAACACTGAGTATCTGTTATTTTATAAACGTAAACTAAG
CGAAGCCGTagcgaaattaaagatggccTACAAAACAATAATGAAGGGGA
AAATGTAGAGTTACatcaatttttgacaatttttaactttgacgttaaga
ggtgggatattttttaattaacgaCAATTCGACGTTAGTTGTGGGAAGAa
ttgatatgtgagtgaccccttactTTCAATTATAccatgaagtcgggtaa
cttgcatcagtcgaGGGAAACTTTGCATAGCCATCAATCCCCAagaagca
aaatttcaaaacaaatgaactgcACAGCTATGCTTGCAGCTCCATTNATC
AGTCGAGGGAAACTTTGCATAGCCATCAATCCCCAagaagcaaaatttca
aaacaaatgaactgcACAGCTATGCTTGCAGCTCCATTCTactatttttg
ttaatttaacTGTGTATTTTAATAACCAGCCAGGTCaatcatttgagggc
tatgcatgtcaAAGTCTCCATTGATGCAAAGTTACCAGACCTCACGGTAC
GTCTATGGACACTTTAAATAAACAATCCAATCATTAGAGGAAGCCTTATG
AACTATAACTGGAACAGACCAGCTATACTTTGTGTCAATAATTAATCAAA
TTAGACTATATACTTACTCCAAACACTATCAATGATGCCAATCCAATCAT
CTTTGTCCTTTTGGGGTTTGGAAACAGATTTCCCTGTGAGGAAACCATCT
TCAGCAGTCAATTTACCTCTCGACTCGTAACTGACACCACCGTCGGTCCA
GTTGATCACTACGAACGACATGATAATATTTTTCCAGAGAAATTCCGACT
ATATAAAAATCTCCCTTTAGGTCAACCCTGCATTCAAACGCTGTAAAAGC
TGCAAGAATCCCGACTCAGCTTTCTTCAAGGGTCTAAGGTCTAATCCTTC
GTTGCATTGTGGTCCAGTAAACCAACCAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047856-exon-scaffold_138-1491911889:105281..106312 | TCONS_00047856-exon-scaffold_138-1491911889:105281..106312 | Clytia hemisphaerica | exon |
| TCONS_00047856-exon-scaffold_138-1510915933:105281..106312 | TCONS_00047856-exon-scaffold_138-1510915933:105281..106312 | Clytia hemisphaerica | exon |
| TCONS_00047856-exon-scaffold_138-1575043694:105281..106312 | TCONS_00047856-exon-scaffold_138-1575043694:105281..106312 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_138 | supercontig | scaffold_138:105281..106312 . |
Blast
The following BLAST results are available for this feature:
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