TCONS_00047857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047857
Unique NameTCONS_00047857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047857 ID=TCONS_00047857|Name=TCONS_00047857|organism=Clytia hemisphaerica|type=transcript|length=450bp
TATAGTTCACAAacgttttgatatttttgacacTTGATTGAATGTGACTG
CTGACGGCTTCTAGCCCCAAAACATTGTTAATTTACCTATCGTTTCAATA
TACCATTTATCGGAGCGATTGAGTATCAATTTCCTGTCCTGAGATAAGTT
TATTTGGCACCAACAGTAAATTAACAATAACGGGGAAGGCCAGTACAATG
TCAGAAAGTCGTGTCCGAAAATATACCACAAGAATGAAGGAGTTTAAAGA
GAATGAACTCAAGAGCAACGAGCTCAAATCAAGGCGAGATAATACCATCA
GGAAAATGTATAAAGTTATGCACAGTATCGATGAGTTAATATCTCAAGGT
GGAAATGTGTCTGAGGGATTGGACCAAGGTCGTGAACTCGACAAAGTATA
CAGTGAACTCCTCAGTATCCATgaagaaagtgaaaatcttCTCGAATTCG
Run BLAST on NCBI

transcript from alignment at scaffold_139:21527..22108+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047857 ID=TCONS_00047857|Name=TCONS_00047857|organism=Clytia hemisphaerica|type=transcript|length=582bp|location=Sequence derived from alignment at scaffold_139:21527..22108+ (Clytia hemisphaerica)
TATAGTTCACAAacgttttgatatttttgacacTTGATTGAATGTGACTG
CTGACGGCTTCTAGCCCCAAAACATTGTTAATTTAGTAAGTAtattttat
ttcagtttagTTCATTTGTTTCTTTGAGTGTCTTTTTCTGTTCTACAGTA
CCTGGGATTAGAGATTTTCTATAgttttgtacatttttctgaagtagttt
tgtattttttgttctAGCCTATCGTTTCAATATACCATTTATCGGAGCGA
TTGAGTATCAATTTCCTGTCCTGAGATAAGTTTATTTGGCACCAACAGTA
AATTAACAATAACGGGGAAGGCCAGTACAATGTCAGAAAGTCGTGTCCGA
AAATATACCACAAGAATGAAGGAGTTTAAAGAGAATGAACTCAAGAGCAA
CGAGCTCAAATCAAGGCGAGATAATACCATCAGGAAAATGTATAAAGTTA
TGCACAGTATCGATGAGTTAATATCTCAAGGTGGAAATGTGTCTGAGGGA
TTGGACCAAGGTCGTGAACTCGACAAAGTATACAGTGAACTCCTCAGTAT
CCATgaagaaagtgaaaatcttCTCGAATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030465XLOC_030465Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047857-exon-scaffold_139-1491911889:21527..21611TCONS_00047857-exon-scaffold_139-1491911889:21527..21611Clytia hemisphaericaexon
TCONS_00047857-exon-scaffold_139-1510915933:21527..21611TCONS_00047857-exon-scaffold_139-1510915933:21527..21611Clytia hemisphaericaexon
TCONS_00047857-exon-scaffold_139-1575043694:21527..21611TCONS_00047857-exon-scaffold_139-1575043694:21527..21611Clytia hemisphaericaexon
TCONS_00047857-exon-scaffold_139-1491911889:21744..22108TCONS_00047857-exon-scaffold_139-1491911889:21744..22108Clytia hemisphaericaexon
TCONS_00047857-exon-scaffold_139-1510915933:21744..22108TCONS_00047857-exon-scaffold_139-1510915933:21744..22108Clytia hemisphaericaexon
TCONS_00047857-exon-scaffold_139-1575043694:21744..22108TCONS_00047857-exon-scaffold_139-1575043694:21744..22108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:21527..22108 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32489	1.63628	0.500038	0.489209	1.36868	1.72562	2.08189	0.708741	0.124052	2.30487	0.298288	0.490207	0.19581	0.101675	0.083591	0.239255	0.331531	0	0	0.163753	0.284663	0.0630993	0.337577	0.153453	1.10637	0.282118	0.201855	0.349323	0.326784	1.35563
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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