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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047905 ID=TCONS_00047905|Name=TCONS_00047905|organism=Clytia hemisphaerica|type=transcript|length=912bp
GTGAATTACGAAAAGAATTACGTGGATGCatgaattttggaaaaagaatt
gCGTGATTgagtgaattgaaggtccgcttTTCATAAAACATTTTGGGTCC
TTTTGGGAATTAAAAACATAAGTAATatgttttgaaacaaaatcGAGCAT
AACAGAAAGTGGATTTCTATTTTAGAACAAGCTGttgctaaaaaaaacaa
aaaatggaggAAAATAACAACACGTAAGGATCATGGACTTTGTAGTTTCG
AACACAGATAATCGTAAATCCATCATGTCTTGGTACAGAGCACGGAgaaA
TCTCCTGCAGTCATCATTATGGGACGATTTGTTAGCGGTCTGGGTAGAGC
TACAAACTTAGTCGCAACCAACTATATTCAAAAGTTATTCCCAGAGGATG
ACCTGTTTTATAAAATGACCATTTTGTCGAACTTTGTTACAGTTGGGACC
GTTATTGGTCCTGTTTTAACGTACATTTTCATACAAATAGATTTCAATCT
GGGTGCATTGAACTTAAATTTTGGCAACTCACCTGGTTTTTACATGTGTT
TGTgtaaaatgtttttgttcgtTTGTCTTTTGCTATTCATGGATGATATC
CCGTTCCAATCGAGTCGAGAACGTTTTCAATATCAGCCAAAGAATCGTCT
CCAAGAGATCGTTTGCACATGCGCACCTGAAGAAGATGAGGATGAGAAAC
TCATTCAAAAATTTGATGCTCAGGAAGAATTTCTAAAAGAACAAGATAAT
GACGACAGTGAGATTGAAatcaaaagtaaaaagaaagtaCCGTTGAAAAA
AGCTCTTTCAGAAACACTACGCCGAAAGAAAGTTTTGGCCGTTTTAATGA
CGTTATTTGTACACGGTATGACGTTCAAAATTATAAACTCGTTAATTCCA
GTGGAGAGttgg Run BLAST on NCBI protein sequence of TCONS_00047905-protein >TCONS_00047905-protein ID=TCONS_00047905-protein|Name=TCONS_00047905-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MGRFVSGLGRATNLVATNYIQKLFPEDDLFYKMTILSNFVTVGTVIGPVL
TYIFIQIDFNLGALNLNFGNSPGFYMCLCKMFLFVCLLLFMDDIPFQSSR
ERFQYQPKNRLQEIVCTCAPEEDEDEKLIQKFDAQEEFLKEQDNDDSEIE
IKSKKKVPLKKALSETLRRKKVLAVLMTLFVHGMTFKIINSLIPVESW Run BLAST on NCBI transcript from alignment at scaffold_139:61280..62462- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047905 ID=TCONS_00047905|Name=TCONS_00047905|organism=Clytia hemisphaerica|type=transcript|length=1183bp|location=Sequence derived from alignment at scaffold_139:61280..62462- (Clytia hemisphaerica)
GTGAATTACGAAAAGAATTACGTGGATGCATGAATTTTGGAAAAAGAATT
GCGTGATTGAGTGAATTGAAGGTCCGCTTTTCATAAAACATTTTGGGTCC
TTTTGGGAATTAAAAACATAAGTAATATGTTTTGAAACAAAATCGAGCAT
AACAGAAAGTGGATTTCTATTTTAGAACAAGCTGTTGCTAAAAAAAACAA
AAAATGGAGGAAAATAACAACACGTAAGGATCATGGACTTTGTAGTTTCG
AACACAGATAATCGTAAATCCATCATGTCTTGGTACAGAGCACGGAGAAG
TATTTTCATTTTGTTGTGTTATGAATCTCTCCTGTTTGGAATCGAACTCA
CCATGCTTGAACCGACCGAATATTTCTACTTCAAAGACGTCTTACGTGTT
AACTCGCCCATCTTATGTTATAGTTTGTCGCTAGCTTTGAATGTCTGGTC
CTCCCTCATGGCGTCCATATTTGTTAGTCACGTGATCAAAAAGTATCACG
TGTTTACATCCGCCATGTTGATTTTATGTTTGATTTCAACAGTCGGTCAT
TGTATGTATTTCGTTAGCAGATCTCCTGCAGTCATCATTATGGGACGATT
TGTTAGCGGTCTGGGTAGAGCTACAAACTTAGTCGCAACCAACTATATTC
AAAAGTTATTCCCAGAGGATGACCTGTTTTATAAAATGACCATTTTGTCG
AACTTTGTTACAGTTGGGACCGTTATTGGTCCTGTTTTAACGTACATTTT
CATACAAATAGATTTCAATCTGGGTGCATTGAACTTAAATTTTGGCAACT
CACCTGGTTTTTACATGTGTTTGTGTAAAATGTTTTTGTTCGTTTGTCTT
TTGCTATTCATGGATGATATCCCGTTCCAATCGAGTCGAGAACGTTTTCA
ATATCAGCCAAAGAATCGTCTCCAAGAGATCGTTTGCACATGCGCACCTG
AAGAAGATGAGGATGAGAAACTCATTCAAAAATTTGATGCTCAGGAAGAA
TTTCTAAAAGAACAAGATAATGACGACAGTGAGATTGAAATCAAAAGTAA
AAAGAAAGTACCGTTGAAAAAAGCTCTTTCAGAAACACTACGCCGAAAGA
AAGTTTTGGCCGTTTTAATGACGTTATTTGTACACGGTATGACGTTCAAA
ATTATAAACTCGTTAATTCCAGTGGAGAGTTGG Coding sequence (CDS) from alignment at scaffold_139:61280..62462- >TCONS_00047905 ID=TCONS_00047905|Name=TCONS_00047905|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_139:61280..62462- (Clytia hemisphaerica)
ATGGGACGATTTGTTAGCGGTCTGGGTAGAGCTACAAACTTAGTCGCAAC
CAACTATATTCAAAAGTTATTCCCAGAGGATGACCTGTTTTATAAAATGA
CCATTTTGTCGAACTTTGTTACAGTTGGGACCGTTATTGGTCCTGTTTTA
ACGTACATTTTCATACAAATAGATTTCAATCTGGGTGCATTGAACTTAAA
TTTTGGCAACTCACCTGGTTTTTACATGTGTTTGTGTAAAATGTTTTTGT
TCGTTTGTCTTTTGCTATTCATGGATGATATCCCGTTCCAATCGAGTCGA
GAACGTTTTCAATATCAGCCAAAGAATCGTCTCCAAGAGATCGTTTGCAC
ATGCGCACCTGAAGAAGATGAGGATGAGAAACTCATTCAAAAATTTGATG
CTCAGGAAGAATTTCTAAAAGAACAAGATAATGACGACAGTGAGATTGAA
ATCAAAAGTAAAAAGAAAGTACCGTTGAAAAAAGCTCTTTCAGAAACACT
ACGCCGAAAGAAAGTTTTGGCCGTTTTAATGACGTTATTTGTACACGGTA
TGACGTTCAAAATTATAAACTCGTTAATTCCAGTGGAGAGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047905-exon-scaffold_139-1575043694:62164..62462 | TCONS_00047905-exon-scaffold_139-1575043694:62164..62462 | Clytia hemisphaerica | exon |
| TCONS_00047905-exon-scaffold_139-1575043694:61280..61892 | TCONS_00047905-exon-scaffold_139-1575043694:61280..61892 | Clytia hemisphaerica | exon |
| TCONS_00047905-exon-scaffold_139-1510915933:62164..62462 | TCONS_00047905-exon-scaffold_139-1510915933:62164..62462 | Clytia hemisphaerica | exon |
| TCONS_00047905-exon-scaffold_139-1510915933:61280..61892 | TCONS_00047905-exon-scaffold_139-1510915933:61280..61892 | Clytia hemisphaerica | exon |
| TCONS_00047905-exon-scaffold_139-1491911889:62164..62462 | TCONS_00047905-exon-scaffold_139-1491911889:62164..62462 | Clytia hemisphaerica | exon |
| TCONS_00047905-exon-scaffold_139-1491911889:61280..61892 | TCONS_00047905-exon-scaffold_139-1491911889:61280..61892 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:61280..62462 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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