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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050414 ID=TCONS_00050414|Name=TCONS_00050414|organism=Clytia hemisphaerica|type=transcript|length=808bp
AGGAGCGCTCGTCGGCAGAATTGTGACAGAACCAGTAGTGCTTGTTGGCG
GAATGGCGACAGAACCAGTAGCGCTTGTTGGTGGAATGGTGACAGAAACA
GTAGCGTTAGTTGGTGGAATGGCGACAGAACCAGTGGTGCTTGTCGGCGG
TATGGTGACAGAACCAGTGGTGCTCGTCGCTGGTATGGCGACAGAACCAG
TAGTGCTTGTCAGTGGAATGGCAACAGAACTAGTAGTGCTAGTCGGCGGC
ATGGCGACAGAACCAGTAGTGCTAGTCGGCTGTATGGCGACAGAACCTGT
AGCGCTCGTTTGCGGAATGGTGACAGAAACAGTAGCACTCGTTGGCGGAA
TGGTGACAGAACCAGTAGTGCTTGTCAGCGGTATGTCGAAAGAACCAGTA
GCGCTTGTCGGTGGAATGGCcattttttaaaatgtaaagATGGAACCGTT
TCTTAAAAGAGATaaagtaaaatatatatttttaaaaacagaaaagaaat
tgccaaacataaaacaaacgtaaaaaacaaaatagataTCACTAACGACA
TGGCATTGCaaagtttatttttaaaagtaaaacaagcaacatgctgaatg
gacctacctgatgatgaaagttagttagcaatgcgaaaagaaaaataaaa
aaaatcagtcagaaaatatatagcatttagcgaaaatacacaacacaata
aattcatcattgattgttgatggggggagagagaagggttgtagggaaaa
aattaataggaagttctggtcgcaaaaatcagttttattgacaattgaat
catgcttg Run BLAST on NCBI transcript from alignment at scaffold_171:79972..80875+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050414 ID=TCONS_00050414|Name=TCONS_00050414|organism=Clytia hemisphaerica|type=transcript|length=904bp|location=Sequence derived from alignment at scaffold_171:79972..80875+ (Clytia hemisphaerica)
AGGAGCGCTCGTCGGCAGAATTGTGACAGAACCAGTAGTGCTTGTTGGCG
GAATGGCGACAGAACCAGTAGCGCTTGTTGGTGGAATGGTGACAGAAACA
GTAGCGTTAGTTGGTGGAATGGCGACAGAACCAGTGGTGCTTGTCGGCGG
TATGGTGACAGAACCAGTGGTGCTCGTCGGTGTAATGGCGACTGAACCAG
TAGCGCTTGCCGACGGTATGGCCTTTTTGTAAAATGTAAAGAGAGAACCG
TTTCTTAAAAGAGATAAAGTAAAAGCTGGTATGGCGACAGAACCAGTAGT
GCTTGTCAGTGGAATGGCAACAGAACTAGTAGTGCTAGTCGGCGGCATGG
CGACAGAACCAGTAGTGCTAGTCGGCTGTATGGCGACAGAACCTGTAGCG
CTCGTTTGCGGAATGGTGACAGAAACAGTAGCACTCGTTGGCGGAATGGT
GACAGAACCAGTAGTGCTTGTCAGCGGTATGTCGAAAGAACCAGTAGCGC
TTGTCGGTGGAATGGCcattttttaaaatgtaaagATGGAACCGTTTCTT
AAAAGAGATaaagtaaaatatatatttttaaaaacagaaaagaaattgcc
aaacataaaacaaacgtaaaaaacaaaatagataTCACTAACGACATGGC
ATTGCaaagtttatttttaaaagtaaaacaagcaacatgctgaatggacc
tacctgatgatgaaagttagttagcaatgcgaaaagaaaaataaaaaaaa
tcagtcagaaaatatatagcatttagcgaaaatacacaacacaataaatt
catcattgattgttgatggggggagagagaagggttgtagggaaaaaatt
aataggaagttctggtcgcaaaaatcagttttattgacaattgaatcatg
cttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050414-exon-scaffold_171-1491911889:79972..80150 | TCONS_00050414-exon-scaffold_171-1491911889:79972..80150 | Clytia hemisphaerica | exon |
| TCONS_00050414-exon-scaffold_171-1510915933:79972..80150 | TCONS_00050414-exon-scaffold_171-1510915933:79972..80150 | Clytia hemisphaerica | exon |
| TCONS_00050414-exon-scaffold_171-1575043694:79972..80150 | TCONS_00050414-exon-scaffold_171-1575043694:79972..80150 | Clytia hemisphaerica | exon |
| TCONS_00050414-exon-scaffold_171-1491911889:80247..80875 | TCONS_00050414-exon-scaffold_171-1491911889:80247..80875 | Clytia hemisphaerica | exon |
| TCONS_00050414-exon-scaffold_171-1510915933:80247..80875 | TCONS_00050414-exon-scaffold_171-1510915933:80247..80875 | Clytia hemisphaerica | exon |
| TCONS_00050414-exon-scaffold_171-1575043694:80247..80875 | TCONS_00050414-exon-scaffold_171-1575043694:80247..80875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_171 | supercontig | scaffold_171:79972..80875 + |
Blast
The following BLAST results are available for this feature:
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