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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004650 ID=TCONS_00004650|Name=TCONS_00004650|organism=Clytia hemisphaerica|type=transcript|length=1491bp
ctccgagcactttgggacatttgttcggcctcaagacgccgagaaaggtc
cgaactttttcgtgggtcacccggtacattTAAATTGTCTAGCCGCAAAC
TTTACTAGCCGCTATACTTTTCCTGTTGAGAACTAGGTTAGCTCTgtgtt
tattatattttttgttggGAACATTCGATTAAACCATTATATCAAAATTA
TATTCCGTGTTTCAGGAGCCCTTGGAGAAGCTGGTCCAGTTGCATCAGGA
GGACTAGAGCCAACAAAAAATACAGCTGAAGCCATCTCAGACGATGAAGA
AATCGACGATATGCAATCGAGGCTAGAATCATTACGTAGTGCTTGAGTCA
GCATAATTTTCTCGTTCCTTAATTGTAAATAAATAAGCTATACATGGACG
CATAGTGACCATTCATTCATCGGGAGCTCGATTCAAGATGTTCAACTTTG
TATGAGTGAATGGACTTGTTTTCGTGATATGGTACATATGTTAATACAAA
ACATTCCATAAAACAAAAGACAATTAATACCGACGAATCATTAGTAATTT
CGAAAGTAAGTCGAAGTGAGTTATGGATACTACCTTtcgtaggtaaaata
tgtaatTGCGTTTAGCCAACTGAAAGCTGCTACCGTTAGTACCATTGGCA
ATTCAAAAGTTCGCTTAACAATCAAATTAAAACATTCTTACTGGTCTAAT
GATTGGAGCAATGAACCAAGCTGACCGGCTAAAAAAACTCTATGAGAAGT
TTCTTGTGGATAAAGCGCCATCTTGGTTTCCTTTTTTTCAGTGAAATCCG
AATATTTGCTGATCGAACTTTTGGACTGTTTAACGCACAACCAGTCTTGA
TTACCCATAATtcatttcgaccgtgaaatacctAATCAAAATGCAATTCG
TTGTGACTTGATGAGCGTTATTTACGTCGACAAAGTATTTAGAATTTGTG
GAAATTATTTGATCGTTTCGTTCTGGTTCACCCtaggaaaaatgaaatat
tattttcttttatgcCAATGCTAGCTCATGTTGTTTAGCAAGCTCGTATT
TCTTATTCTAACTTTGTTAAATTAGACACTTGAGTATCAGTTTCCTATCT
CCATGACATTAGTAAATTTTTGGTGCTGGCTTTCAAATTACCATGAAGTA
TTTCGTTATGATTTATGGAATACTTCATTTcgtgaattttttagaaaata
ttggCAGTCTTAAATCAAAGCAAAATGAAATTTAGATTGCTCGTCTGGAA
AACCTTGTTTACCAAAAAGTGCACTTTGCGATTTTGCATTTTATTTTTGT
AGGTACTTATTGtatttaaaatgtcaaaaattgattttttataatattAA
AGAATAGACTTttctgtaaaataaaaagaagaagaaggagaagaagtcAA
ACTATGACTACAAAGGATTTATCTTCTTTATGAATATTTATTCCTCGGCT
GACTTCTTGCTGTCCACTTCCCGCACTAAAATTTTCCCCAC Run BLAST on NCBI transcript from alignment at sc0000047:744760..746895+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004650 ID=TCONS_00004650|Name=TCONS_00004650|organism=Clytia hemisphaerica|type=transcript|length=2136bp|location=Sequence derived from alignment at sc0000047:744760..746895+ (Clytia hemisphaerica)
ctccgagcactttgggacatttgttcggcctcaagacgccgagaaaggtc
cgaactttttcgtgggtcacccggtacattTAAATTGTCTAGCCGCAAAC
TTTACTAGCCGCTATACTTTTCCTGTTGAGAACTAGGTTAGCTCTgtgtt
tattatattttttgttggGAACATTCGATTAAACCATTATATCAAAATTA
TATTCCGTGTTTCAGGAGCCCTTGGAGAAGCTGGTCCAGTTGCATCAGGA
GGACTAGAGGTATGTTTTATTTACGGCTCTGAATAGTATGAATACTTGGA
GGATTTTTGGCAAGTTTTTTTCACACTTCTTGGTGTAGCTTTGAAATGAA
TAAATGATTTGATATCTCAAAACAATTACAGTGCATCGAACTGGGGAGTA
AGGTTGGGTTAAGTTTTTACTGGATAAGCCATAGCACGcgaaagaaaaac
attaaatGTCATTAATATAAATATTGCTTATTTATTTCAACAGCCAACAA
AAAATACAGCTGAAGCCATCTCAGACGATGAAGAAATCGACGATATGCAA
TCGAGGCTAGAATCATTACGTAGTGCTTGAGTCAGCATAATTTTCTCGTT
CCTTAATTGTAAATAAATAAGCTATACATGGACGCATAGTGACCATTCAT
TCATCGGGAGCTCGATTCAAGATGTTCAACTTTGTATGAGTGAATGGACT
TGTTTTCGTGATATGGTACATATGTTAATACAAAACATTCCATAAAACAA
AAGACAATTAATACCGACGAATCATTAGTAATTTCGAAAGTAAGTCGAAG
TGAGTTATGGATACTACCTTtcgtaggtaaaatatgtaatTGCGTTTAGC
CAACTGAAAGCTGCTACCGTTAGTACCATTGGCAATTCAAAAGTTCGCTT
AACAATCAAATTAAAACATTCTTACTGGTCTAATGATTGGAGCAATGAAC
CAAGCTGACCGGCTAAAAAAACTCTATGAGAAGTTTCTTGTGGATAAAGC
GCCATCTTGGTTTCCTTTTTTTCAGTGAAATCCGAATATTTGCTGATCGA
ACTTTTGGACTGTTTAACGCACAACCAGTCTTGATTACCCATAATtcatt
tcgaccgtgaaatacatgttttttttttataagcaagtgtatgccccttg
gtcaggctcgtgtatgcttaagttctcaaagcatctaggcatagtttatg
cttattataNNNNNNNNNNNNNNNNNNNNNNNNNNgcttatgattcaccc
cgagccaagttNNAAATGTTAGCTAGCTGCgaaaatgtcttattttttac
ttgacctctaccaaacctttttaaacagataaaaatgaccacttgaaaaa
tattttaggctgacatatatgctcatgttatgcttaggaattctgcaaat
ctgagccttcatatgcttataagcgttatgcttataaaaaaaaaacatgt
aacctAATCAAAATGCAATTCGTTGTGACTTGATGAGCGTTATTTACGTC
GACAAAGTATTTAGAATTTGTGGAAATTATTTGATCGTTTCGTTCTGGTT
CACCCtaggaaaaatgaaatattattttcttttatgcCAATGCTAGCTCA
TGTTGTTTAGCAAGCTCGTATTTCTTATTCTAACTTTGTTAAATTAGACA
CTTGAGTATCAGTTTCCTATCTCCATGACATTAGTAAATTTTTGGTGCTG
GCTTTCAAATTACCATGAAGTATTTCGTTATGATTTATGGAATACTTCAT
TTcgtgaattttttagaaaatattggCAGTCTTAAATCAAAGCAAAATGA
AATTTAGATTGCTCGTCTGGAAAACCTTGTTTACCAAAAAGTGCACTTTG
CGATTTTGCATTTTATTTTTGTAGGTACTTATTGtatttaaaatgtcaaa
aattgattttttataatattAAAGAATAGACTTttctgtaaaataaaaag
aagaagaaggagaagaagtcAAACTATGACTACAAAGGATTTATCTGTCT
TTATGAATATTTATTTCTCGGCTGACTTATTGCTGTCCACTCCCCGCACT
AAGATTTTCCCCACTTTNGTCTTTATGAATATTTATTCCTCGGCTGACTT
CTTGCTGTCCACTTCCCGCACTAAAATTTTCCCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004650-exon-sc0000047-1491911889:744760..745018 | TCONS_00004650-exon-sc0000047-1491911889:744760..745018 | Clytia hemisphaerica | exon |
| TCONS_00004650-exon-sc0000047-1510915933:744760..745018 | TCONS_00004650-exon-sc0000047-1510915933:744760..745018 | Clytia hemisphaerica | exon |
| TCONS_00004650-exon-sc0000047-1575043694:744760..745018 | TCONS_00004650-exon-sc0000047-1575043694:744760..745018 | Clytia hemisphaerica | exon |
| TCONS_00004650-exon-sc0000047-1491911889:745253..745874 | TCONS_00004650-exon-sc0000047-1491911889:745253..745874 | Clytia hemisphaerica | exon |
| TCONS_00004650-exon-sc0000047-1510915933:745253..745874 | TCONS_00004650-exon-sc0000047-1510915933:745253..745874 | Clytia hemisphaerica | exon |
| TCONS_00004650-exon-sc0000047-1575043694:745253..745874 | TCONS_00004650-exon-sc0000047-1575043694:745253..745874 | Clytia hemisphaerica | exon |
| TCONS_00004650-exon-sc0000047-1491911889:746213..746755 | TCONS_00004650-exon-sc0000047-1491911889:746213..746755 | Clytia hemisphaerica | exon |
| TCONS_00004650-exon-sc0000047-1510915933:746213..746755 | TCONS_00004650-exon-sc0000047-1510915933:746213..746755 | Clytia hemisphaerica | exon |
| TCONS_00004650-exon-sc0000047-1575043694:746213..746755 | TCONS_00004650-exon-sc0000047-1575043694:746213..746755 | Clytia hemisphaerica | exon |
| TCONS_00004650-exon-sc0000047-1491911889:746829..746895 | TCONS_00004650-exon-sc0000047-1491911889:746829..746895 | Clytia hemisphaerica | exon |
| TCONS_00004650-exon-sc0000047-1510915933:746829..746895 | TCONS_00004650-exon-sc0000047-1510915933:746829..746895 | Clytia hemisphaerica | exon |
| TCONS_00004650-exon-sc0000047-1575043694:746829..746895 | TCONS_00004650-exon-sc0000047-1575043694:746829..746895 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:744760..746895 + |
Blast
The following BLAST results are available for this feature:
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