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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047867 ID=TCONS_00047867|Name=TCONS_00047867|organism=Clytia hemisphaerica|type=transcript|length=385bp
ATGGGAGTCATTAATTCCATTCACATCCGTGTAAACATCAACCGACTTTG
TATCTTAGGAATGACAGCCTCGATGACCACTTCAAAACCAGCCAAGCCGT
TGAACTCAAAGATTCAGCAGGTACATCATATCTGTCTTACAACGTACAAA
GAATGTTCAGACAAATGGTATTGTTTTGTGGACTGGTTTTGCCAATGCAA
ATCAAAATACAGTGACTGTtgtgACGAAGCTTTCCAATGTGAGAAAATCG
AACCTAAATGCAGTGGAAAATATTGTGAAATTATCAACCCAAAATATCGA
GATTGCTTGAAGGATTCCTTGAGATGCCCTTTGGCTCccGCTCAAACCAC
AAAGAAGAATGTTCCACAGAATCCAAAAATTGTAA Run BLAST on NCBI transcript from alignment at scaffold_139:116106..119615+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047867 ID=TCONS_00047867|Name=TCONS_00047867|organism=Clytia hemisphaerica|type=transcript|length=3510bp|location=Sequence derived from alignment at scaffold_139:116106..119615+ (Clytia hemisphaerica)
ATGGGAGTCATTAATTCCATTCACATCCGTGTAAACATCAACCGACTTTG
TATCTTAGGAATGACAGCCTCGATGACCACTTCAAAACCAGCCAAGCCGT
TGAACTCAAAGATTCAGCAGGTACATCATATCGTAAATCTTTCTACCTCT
AAACTTGCTGTTACAAATCGAGCTGTTTTGGTCCCTTTTTGTTGGAAACC
CACTCATCCGATTAACTAAGCCGTTTTTGATTATGTTTTTTTGGTAGAAT
ACAAGCTAGATAGACTATTTAATTACCTTTcaatctgttttgtttttcta
atcAAATTTCATCCTTTTGAAGCTCAAATTAGAGAGCATGAACCTTAATG
ACTTTCTTTTACTCTTCCTTTAGTGTCTTACAACGTACAAAGAATGTTCA
GACAAATGGTATTGTTTTGTGGACTGGTTTTGCCAATGCAAATCAAAATA
CAGTGACTGTGTAAGCTAAATttccttttatttatttgagcaGACCAAGT
CACCAAATTTTCgattaaaatcaattaaaactaCGAGTGCAAATTAACGA
TATAGACGTTTGCTCTTGCATATTGCTGATTATTTATTTTCCGTCAGAAA
TGTAGTCGAAATTTTATCCCGTGCAAGAGTGCTTTATTATGCAGGCACTC
AGCCACAATCTCACCGAAGTTAAAAGTTTGCTCGCACCAACTCCACTGGG
TTATACAAACTTCGAAGGTCTAACAATGGTTTCTGAGTCctcaattaaat
ttttcttttgccttttttttccattacattaaagagaactaattttggcg
agcagcaaatatcttttttaaaatttttcatattAGCACGAACTTATTTT
GACGGAAGGtcaaattttggcgaatgatgGGCTAATTCTGtcctattttg
ccttatttttgagcaatttttaataaatttgaGAGGTTGTTTTggcaaaa
tacaaaacaaattaattttggcgataGCTTATTTTAGGGAGTGAATAaat
tatctaattttggtgagaacttattttgacgaattttgtctaaactcgcc
aaattcgccaaaattagttcccttaatcTATTTATATTCTTCGGCTATTt
tgaaacgcaggtcacaggtcattgACACAGCTTAAATGacatctctaaaa
cagctctcttggagtactaaattttttcgaaacatGTCGATATCTATATC
CACTTACACCgttagcatcctattgagcaaTATATTGTAAATTAgtgtcc
cgggggggggtactagggttggtgaatgaggggtatgtgcgNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtcccccccccccccggttcgGTG
TACACACCTCATATTTTGTGATGACATCATTATTTATATAGTTTAAGTGT
CACTTTATCAACATTTGGGATAGATGATcgataaaatcctttaaataagA
TATTTATTATACAACAATTCCATGACATATAATATTTTACGAAACATGTT
ATAGATTATATGTTACCTGGCCCGGTGGAACAATCATAAAAGTGGAGAGG
TTGAAGGCTCGAAATTAGATAAAATTCGctaaaaatttgcgaaaaaactT
CATTTGCTTAAAAGTTGGGGAGGCTGGAGTTTCCCCAGTCTCaccgcttc
cgccgggcctgtatAAGAatgcgttacagttttccggtctgtagtttgca
tgacctgtgacctgtgtctTAGACCTGTGAACTGCGTTTCGAACCGTTTC
GAATTAGCcgtacatttttttattttagtgtgACGAAGCTTTCCAATGTG
AGAAAATCGAACCTAAATGCAGTGGAAAATATTGTGAAATTATCAACCCA
AAATATCGAGATTGCTTGAAGGATTCCTTGAGATGCCCTTTGGCTCGTGc
gtaaaattgaaaatggttGTGTTGTGTTCTTACattcaaaagacttttta
aatcttataaaattactgataatttttgtttttgctgtGTTATATAAAAT
AGAGTGTCAAAAAAGCGTCACATGCTTGTCAATTTatttggtatattatc
aggTCAGGTTtcgttttttaatttcaaaagaaatctcttACACGTCGCCT
TCCACGACTCCTTCCCGTGAAAATTGCGTTAAATTGCGAAGGTGTGATGA
TGATTTGCATTAGCTTGCTAATCTATGtttctcaaaagaaaaaaaaatta
acattattcGATTTAGTCTTTATTTCGGTTTTTAGCGAGTACATTATTTT
CACTAActgtatttttctaaaataaaactTAAAGTATTTTTCATTAGAAT
TATGTTAGAACTTATTGGTGCGCATTGAATATTGATCGAATTTACCCATA
AAAATAAGTCTTTTATTATATAAAACGTTAAAGAGCTAAATATAGAACTT
TAAACCTAATAGTGAGCGCATCACTCGCATCAAACAGACAGTTTATCTGA
GTGATCTACTGATGGATCTACCACAGATATAGCCTATTTTccctattctt
ataaaaatcaaacCGATAGAATTGTTTGGAATAATATTGATACAGGAGCT
CAGCTTTCAAAACATTCCGaataaaaaacagttaaaaactaattttttgt
tttagtaGGACACTTTTTAATTTGACAAGCAGTGTAAGCAGTAACAAAAC
TTTCTCaggatcaaaatgaaaatctgtATACTCTTTGCATTATTCTTCGT
TGCTCACGGTAAGTTAGTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNggggggggggttggaaaaaatctcaaa
acttaataagcgggggggttggaataaaaatgtcctgggtgaaaattttt
tgaaaaggagactaatacagcagaattgggacaaaaaagggaaccttcaa
aaatattttcccaaaaattaataagcggggggttggaataacaatgtcct
gggtggaaaattttcgaaaaattaattagcggggggggcggctattaggt
acccgagagtaacttTGATATAATGAGATTGATCAAATGAGATTTCTTCT
TACACAGTAAATAATAAGACCTTTACATACTTTCAGGAATATTTCAGTTT
TCATGCCAATGTAGTGTATTCTCCATACGTTTTTCATTCTTAAAcgactt
tcaaattttcagccGCTCAAACCACAAAGAAGAATGTTCCACAGAATCCA
AAAATTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047867-exon-scaffold_139-1491911889:116106..116237 | TCONS_00047867-exon-scaffold_139-1491911889:116106..116237 | Clytia hemisphaerica | exon |
| TCONS_00047867-exon-scaffold_139-1510915933:116106..116237 | TCONS_00047867-exon-scaffold_139-1510915933:116106..116237 | Clytia hemisphaerica | exon |
| TCONS_00047867-exon-scaffold_139-1575043694:116106..116237 | TCONS_00047867-exon-scaffold_139-1575043694:116106..116237 | Clytia hemisphaerica | exon |
| TCONS_00047867-exon-scaffold_139-1491911889:116479..116565 | TCONS_00047867-exon-scaffold_139-1491911889:116479..116565 | Clytia hemisphaerica | exon |
| TCONS_00047867-exon-scaffold_139-1510915933:116479..116565 | TCONS_00047867-exon-scaffold_139-1510915933:116479..116565 | Clytia hemisphaerica | exon |
| TCONS_00047867-exon-scaffold_139-1575043694:116479..116565 | TCONS_00047867-exon-scaffold_139-1575043694:116479..116565 | Clytia hemisphaerica | exon |
| TCONS_00047867-exon-scaffold_139-1491911889:118034..118151 | TCONS_00047867-exon-scaffold_139-1491911889:118034..118151 | Clytia hemisphaerica | exon |
| TCONS_00047867-exon-scaffold_139-1510915933:118034..118151 | TCONS_00047867-exon-scaffold_139-1510915933:118034..118151 | Clytia hemisphaerica | exon |
| TCONS_00047867-exon-scaffold_139-1575043694:118034..118151 | TCONS_00047867-exon-scaffold_139-1575043694:118034..118151 | Clytia hemisphaerica | exon |
| TCONS_00047867-exon-scaffold_139-1491911889:119568..119615 | TCONS_00047867-exon-scaffold_139-1491911889:119568..119615 | Clytia hemisphaerica | exon |
| TCONS_00047867-exon-scaffold_139-1510915933:119568..119615 | TCONS_00047867-exon-scaffold_139-1510915933:119568..119615 | Clytia hemisphaerica | exon |
| TCONS_00047867-exon-scaffold_139-1575043694:119568..119615 | TCONS_00047867-exon-scaffold_139-1575043694:119568..119615 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:116106..119615 + |
Blast
The following BLAST results are available for this feature:
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