TCONS_00047869 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047869
Unique NameTCONS_00047869
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047869 ID=TCONS_00047869|Name=TCONS_00047869|organism=Clytia hemisphaerica|type=transcript|length=1609bp
ATGGGAGTCATTAATTCCATTCACATCCGTGTAAACATCAACCGACTTTG
TATCTTAGGAATGACAGCCTCGATGACCACTTCAAAACCAGCCAAGCCGT
TGAACTCAAAGATTCAGCAGTGTCTTACAACGTACAAAGAATGTTCAGAC
AAATGGTATTGTTTTGTGGACTGGTTTTGCCAATGCAAATCAAAATACAG
TGACTGTtgtgACGAAGCTTTCCAATGTGAGAAAATCGAACCTAAATGCA
GTGGAAAATATTGTGAAATTATCAACCCAAAATATCGAGATTGCTTGAAG
GATTCCTTGAGATGCCCTTTGGCTCGTGcgtaaaattgaaaatggttGTG
TTGTGTTCTTACattcaaaagactttttaaatcttataaaattactgata
atttttgtttttgctgtGTTATATAAAATAGAGTGTCAAAAAAGCGTCAC
ATGCTTGTCAATTTatttggtatattatcaggTCAGGTTtcgttttttaa
tttcaaaagaaatctcttACACGTCGCCTTCCACGACTCCTTCCCGTGAA
AATTGCGTTAAATTGCGAAGGTGTGATGATGATTTGCATTAGCTTGCTAA
TCTATGtttctcaaaagaaaaaaaaattaacattattcGATTTAGTCTTT
ATTTCGGTTTTTAGCGAGTACATTATTTTCACTAActgtatttttctaaa
ataaaactTAAAGTATTTTTCATTAGAATTATGTTAGAACTTATTGGTGC
GCATTGAATATTGATCGAATTTACCCATAAAAATAAGTCTTTTATTATAT
AAAACGTTAAAGAGCTAAATATAGAACTTTAAACCTAATAGTGAGCGCAT
CACTCGCATCAAACAGACAGTTTATCTGAGTGATCTACTGATGGATCTAC
CACAGATATAGCCTATTTTccctattcttataaaaatcaaacCGATAGAA
TTGTTTGGAATAATATTGATACAGGAGCTCAGCTTTCAAAACATTCCGaa
taaaaaacagttaaaaactaattttttgttttagtaGGACACTTTTTAAT
TTGACAAGCAGTGTAAGCAGTAACAAAACTTTCTCaggatcaaaatgaaa
atctgtATACTCTTTGCATTATTCTTCGTTGCTCACGccGCTCAAACCAC
AAAGAAGAATGTTCCACAGAATCCAAAAATTGTAAAGtGTCTTGACGAAT
ACAAGGAGTGCAAGAAAGGATTTTTATGTGGTCCGTTAGATATCTTTTGC
GGATGTAAAAAACAATACGCCAAGTGTTGTGACGAAGCTTTCAAGTGCGA
AGAAATCGAACCAAAATGCAGCGGGAAATATTGTGAAATTATCGACCCTA
AATATCGAGCATGCTTAAAAGATTCCCTTAGATGTCCTTTGAGTCTCGCT
GAAAactgaaatttctgaaagttcACCAGAAACCCATTGTTTATGTTTGT
TATAACTTTAAATGTTACTTTTTATTATGTATTGTAAAAAATTTCCATGC
ACTaaaatatggtcaaaaaagTTTGCAAGACAAGTATTATCGTCCCACCC
ACACTTAATTAAGGTGCTTTTAATGAAATGTTATTTATGCCCGTTTTAGC
TTTCATTGC
Run BLAST on NCBI

transcript from alignment at scaffold_139:116106..123535+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047869 ID=TCONS_00047869|Name=TCONS_00047869|organism=Clytia hemisphaerica|type=transcript|length=7430bp|location=Sequence derived from alignment at scaffold_139:116106..123535+ (Clytia hemisphaerica)
ATGGGAGTCATTAATTCCATTCACATCCGTGTAAACATCAACCGACTTTG
TATCTTAGGAATGACAGCCTCGATGACCACTTCAAAACCAGCCAAGCCGT
TGAACTCAAAGATTCAGCAGGTACATCATATCGTAAATCTTTCTACCTCT
AAACTTGCTGTTACAAATCGAGCTGTTTTGGTCCCTTTTTGTTGGAAACC
CACTCATCCGATTAACTAAGCCGTTTTTGATTATGTTTTTTTGGTAGAAT
ACAAGCTAGATAGACTATTTAATTACCTTTcaatctgttttgtttttcta
atcAAATTTCATCCTTTTGAAGCTCAAATTAGAGAGCATGAACCTTAATG
ACTTTCTTTTACTCTTCCTTTAGTGTCTTACAACGTACAAAGAATGTTCA
GACAAATGGTATTGTTTTGTGGACTGGTTTTGCCAATGCAAATCAAAATA
CAGTGACTGTGTAAGCTAAATttccttttatttatttgagcaGACCAAGT
CACCAAATTTTCgattaaaatcaattaaaactaCGAGTGCAAATTAACGA
TATAGACGTTTGCTCTTGCATATTGCTGATTATTTATTTTCCGTCAGAAA
TGTAGTCGAAATTTTATCCCGTGCAAGAGTGCTTTATTATGCAGGCACTC
AGCCACAATCTCACCGAAGTTAAAAGTTTGCTCGCACCAACTCCACTGGG
TTATACAAACTTCGAAGGTCTAACAATGGTTTCTGAGTCctcaattaaat
ttttcttttgccttttttttccattacattaaagagaactaattttggcg
agcagcaaatatcttttttaaaatttttcatattAGCACGAACTTATTTT
GACGGAAGGtcaaattttggcgaatgatgGGCTAATTCTGtcctattttg
ccttatttttgagcaatttttaataaatttgaGAGGTTGTTTTggcaaaa
tacaaaacaaattaattttggcgataGCTTATTTTAGGGAGTGAATAaat
tatctaattttggtgagaacttattttgacgaattttgtctaaactcgcc
aaattcgccaaaattagttcccttaatcTATTTATATTCTTCGGCTATTt
tgaaacgcaggtcacaggtcattgACACAGCTTAAATGacatctctaaaa
cagctctcttggagtactaaattttttcgaaacatGTCGATATCTATATC
CACTTACACCgttagcatcctattgagcaaTATATTGTAAATTAgtgtcc
cgggggggggtactagggttggtgaatgaggggtatgtgcgNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtcccccccccccccggttcgGTG
TACACACCTCATATTTTGTGATGACATCATTATTTATATAGTTTAAGTGT
CACTTTATCAACATTTGGGATAGATGATcgataaaatcctttaaataagA
TATTTATTATACAACAATTCCATGACATATAATATTTTACGAAACATGTT
ATAGATTATATGTTACCTGGCCCGGTGGAACAATCATAAAAGTGGAGAGG
TTGAAGGCTCGAAATTAGATAAAATTCGctaaaaatttgcgaaaaaactT
CATTTGCTTAAAAGTTGGGGAGGCTGGAGTTTCCCCAGTCTCaccgcttc
cgccgggcctgtatAAGAatgcgttacagttttccggtctgtagtttgca
tgacctgtgacctgtgtctTAGACCTGTGAACTGCGTTTCGAACCGTTTC
GAATTAGCcgtacatttttttattttagtgtgACGAAGCTTTCCAATGTG
AGAAAATCGAACCTAAATGCAGTGGAAAATATTGTGAAATTATCAACCCA
AAATATCGAGATTGCTTGAAGGATTCCTTGAGATGCCCTTTGGCTCGTGc
gtaaaattgaaaatggttGTGTTGTGTTCTTACattcaaaagacttttta
aatcttataaaattactgataatttttgtttttgctgtGTTATATAAAAT
AGAGTGTCAAAAAAGCGTCACATGCTTGTCAATTTatttggtatattatc
aggTCAGGTTtcgttttttaatttcaaaagaaatctcttACACGTCGCCT
TCCACGACTCCTTCCCGTGAAAATTGCGTTAAATTGCGAAGGTGTGATGA
TGATTTGCATTAGCTTGCTAATCTATGtttctcaaaagaaaaaaaaatta
acattattcGATTTAGTCTTTATTTCGGTTTTTAGCGAGTACATTATTTT
CACTAActgtatttttctaaaataaaactTAAAGTATTTTTCATTAGAAT
TATGTTAGAACTTATTGGTGCGCATTGAATATTGATCGAATTTACCCATA
AAAATAAGTCTTTTATTATATAAAACGTTAAAGAGCTAAATATAGAACTT
TAAACCTAATAGTGAGCGCATCACTCGCATCAAACAGACAGTTTATCTGA
GTGATCTACTGATGGATCTACCACAGATATAGCCTATTTTccctattctt
ataaaaatcaaacCGATAGAATTGTTTGGAATAATATTGATACAGGAGCT
CAGCTTTCAAAACATTCCGaataaaaaacagttaaaaactaattttttgt
tttagtaGGACACTTTTTAATTTGACAAGCAGTGTAAGCAGTAACAAAAC
TTTCTCaggatcaaaatgaaaatctgtATACTCTTTGCATTATTCTTCGT
TGCTCACGGTAAGTTAGTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNggggggggggttggaaaaaatctcaaa
acttaataagcgggggggttggaataaaaatgtcctgggtgaaaattttt
tgaaaaggagactaatacagcagaattgggacaaaaaagggaaccttcaa
aaatattttcccaaaaattaataagcggggggttggaataacaatgtcct
gggtggaaaattttcgaaaaattaattagcggggggggcggctattaggt
acccgagagtaacttTGATATAATGAGATTGATCAAATGAGATTTCTTCT
TACACAGTAAATAATAAGACCTTTACATACTTTCAGGAATATTTCAGTTT
TCATGCCAATGTAGTGTATTCTCCATACGTTTTTCATTCTTAAAcgactt
tcaaattttcagccGCTCAAACCACAAAGAAGAATGTTCCACAGAATCCA
AAAATTGTAAAGgtaaatgaatttgaatttttctgaggtcctataaatta
acctctgttcgtccgttcgtccgttagttcgttaccaacttttctcgaga
ttggctcattagtttttcctgatttttggcacaaagagttttttggactt
tttgcaaaatcctgtcattacttttttctgattttttgcacaatgatgca
aaatgacaatacctaaaatgtggcgaagcccgattttcaaaaaagaatat
gccagaaaaactgtttttttggcattttctcaagattttaccattggttt
tttctgattttttgctcaaagatgcgtattaacaatgcccaaaacatggc
cgagttcgatttttgagaaaaaaatttttccggttgaaaatgccggaaat
cgccgtgtttgcagattttcattgaattttttccttatattaatttctat
gttttttacacaaaaacattcacaggaaaaaattttcgatttccaaggtt
ggaaatttcaagttttcttagttggaaaaaagataaaatccaatggaaaa
tccaacctgaaaatgtggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaatgtgggac
attctccaaggttggaaattttgcattttccatggcttggaattttcgta
aatccaggttgaaaaaagccaaaatccaagcttaaacaaggttggaattt
tcgaaaattcaggttgaaaaaagccaaaatccagaaagtgatggcagaga
tttggaaaagagatcttaaacaaggtttttgtttttgtgaacagtcactc
gctagcctaggctcgatagCTCCCGGTCAATCTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgccaagatttcctt
tgcgaaccggaaagcggttggtagatcattaagcagacctatactacctg
tggttttgtagaggtctgcgattcagactaggtcAATCtatcgttattgt
tcgcacagatacgtggttgatcttagatcactcacacagctcagcaggga
actatttgaaactatgacacaagtaccctatgtgcttcactgtgcgaact
cattgcgattgaccgaggccgctctgaagagacgcctcacctgacggaaa
cttacagcttgactgctcacattatagcccaatatctaggttagctaacc
atcaaaacatttttgagcaaaaaatcgcttgtggttttcccaaggacatg
aatagaaaatggttagaaaaacgtaatttccacatggatttttaacgttt
tccaaactgtttggagaaacacaaatttccaacccaaaaagtctagtttt
caaagaaagggtctcaatcttagaaaaatgtaatttccacatggatattt
aacgttttccaaactgtttgggagaaacacaaatttccgacccaaaaagt
ctagtttttcaaaatttactaaaatatgtatTCTCACATcgactgtttgg
aaaataaaagtttcccacccaaaaagtcatgttttccaaccagccttgga
aaattgtcatttctacatggttttttttaacttgatttttcaagggcatt
gctttattctacaaaacctatgggtaatttacgttttccaaatcagctta
aagtaatcgctcaaatttccaaccttcaattataaaaccaaaatttccaa
ccttggaaatcgaaaattttttcctgtgattattgataacaatgctcacc
atcaagcatgattcaattgtcaataaaactgatttttgcgaccagaactt
tctatttatttttccctaTAACCCTTCCCTGTCCTCCCATCttaacaatc
aatgatgaatttattgcgttatgcattttcgctaaacgctatattttctg
acagattttttttcatttttctcctcgcattgctatctaactttcatcat
caggtaggtccattcagcatctagcttgttattgTTGAAACGACAAGTGA
ACAGATATTTTGCCTACGATTTCCACAATCTTTGAAGCCTACGAAGCATG
TTCTTATATTCACCTatattttgtgcaatttccctaagaaatcgggtatt
TTTAGagccataaaatgttcttaacatgttcttaatgtTTTGGTCACAGG
TTTCCTTGACGTACGTGACGAATTCGTTTCTATTTTGGGCAATGACCTGA
CTAAAGCATTTTTTTGTCAGCAATAAAAGCCGAGTAAACATAGAacaatt
catttttatttatttacttttcagtGTCTTGACGAATACAAGGAGTGCAA
GAAAGGATTTTTATGTGGTCCGTTAGATATCTTTTGCGGATGTAAAAAAC
AATACGCCAAGTGTGTAAGTTGACTTAAAATGCCACTTGAGTtgtcaaaa
tgttttttgagaTGGCTTTTTAGGCTCTTTTCTCTTCACCTCCTGTTCGT
CAAATAGTTTTATACCCCTTATTCCTTAGTATCACTTACTGCCTGAGGTT
TCGTGGAGGTTCAGACTAAAACTACCCAGCTTTTTCTTTAATTCTTTCGC
TTTCTCTACAATATTCGTAATAGATACCCGAAACCTTAAAAGCTGGACAG
AAAAAACAGCCCTGTCTAAGCCTCCATTTTTTATAAGTAGCGCGGTGGAA
GTCGGCACGCATGGCAATCGCTCCGGTGCCGAAAGACACCGAAGATGCAA
CGTGCTAGCTTCGTTCGCATAATTGTTCCTAAGACATTGCTCCTATGGGA
GCACCAAAAATGACAGTTTTGGAAAGTCACCTCCCCAGTTTATCCCAAAA
TTTGTCGAGCCACTAGCACTACGCTTATGCTTTTTATAAAAAGCTTATga
cacctctgtctcacagccccactggaacttttttcctcagtgggaataaa
aattccaattgaaatcccgatggggatataaattttattgttccgaggtt
aaaaaatccagtggggatggttttgaagtacaacttttaaacattgaatt
ttgaatgggaatgaaatcaaagtcattttccagtggggatgggttcccag
tgggtctgtgacacaaaaGTTTGCAATGATCCTCTACCTCTTTGAATCAA
TATTTATACTTGGGTACAGTCTGGTTAAAGCCCTGTTTCGAAACCATAAA
GACAATATAAATAGACTTGGTTTTCTTATCATAATCTTTTCCTTTTAGTG
TGACGAAGCTTTCAAGTGCGAAGAAATCGAACCAAAATGCAGCGGGAAAT
ATTGTGAAATTATCGACCCTAAATATCGAGCATGCTTAAAAGATTCCCTT
AGATGTCCTTTGAGTCTCGCTGAAAactgaaatttctgaaagttcACCAG
AAACCCATTGTTTATGTTTGTTATAACTTTAAATGTTACTTTTTATTATG
TATTGTAAAAAATTTCCATGCACTaaaatatggtcaaaaaagTTTGCAAG
ACAAGTATTATCGTCCCACCCACACTTAATTAAGGTGCTTTTAATGAAAT
GTTATTTATGCCCGTTTTAGCTTTCATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030467XLOC_030467Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047869-exon-scaffold_139-1491911889:116106..116225TCONS_00047869-exon-scaffold_139-1491911889:116106..116225Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1510915933:116106..116225TCONS_00047869-exon-scaffold_139-1510915933:116106..116225Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1575043694:116106..116225TCONS_00047869-exon-scaffold_139-1575043694:116106..116225Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1491911889:116479..116565TCONS_00047869-exon-scaffold_139-1491911889:116479..116565Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1510915933:116479..116565TCONS_00047869-exon-scaffold_139-1510915933:116479..116565Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1575043694:116479..116565TCONS_00047869-exon-scaffold_139-1575043694:116479..116565Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1491911889:118034..118963TCONS_00047869-exon-scaffold_139-1491911889:118034..118963Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1510915933:118034..118963TCONS_00047869-exon-scaffold_139-1510915933:118034..118963Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1575043694:118034..118963TCONS_00047869-exon-scaffold_139-1575043694:118034..118963Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1491911889:119568..119617TCONS_00047869-exon-scaffold_139-1491911889:119568..119617Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1510915933:119568..119617TCONS_00047869-exon-scaffold_139-1510915933:119568..119617Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1575043694:119568..119617TCONS_00047869-exon-scaffold_139-1575043694:119568..119617Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1491911889:122280..122369TCONS_00047869-exon-scaffold_139-1491911889:122280..122369Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1510915933:122280..122369TCONS_00047869-exon-scaffold_139-1510915933:122280..122369Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1575043694:122280..122369TCONS_00047869-exon-scaffold_139-1575043694:122280..122369Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1491911889:123204..123535TCONS_00047869-exon-scaffold_139-1491911889:123204..123535Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1510915933:123204..123535TCONS_00047869-exon-scaffold_139-1510915933:123204..123535Clytia hemisphaericaexon
TCONS_00047869-exon-scaffold_139-1575043694:123204..123535TCONS_00047869-exon-scaffold_139-1575043694:123204..123535Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:116106..123535 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0574065	0	0.0324995	0	1.43158	0.96769	9.60971	10.6452	22.9269	16.2724	22.1919	25.8648	25.4193	20.7961	23.4634	29.9112	3.12943	3.82274	40.908	39.2724	12.5739	10.982	10.2645	14.1084	9.01037	12.3849	2.16471	2.43493	12.1063	13.1997
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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